Experiment: nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0238 and petJ are separated by 6 nucleotides petJ and apcD are separated by 181 nucleotides apcD and rumA are separated by 144 nucleotides
Synpcc7942_0238: Synpcc7942_0238 - hypothetical protein, at 233,143 to 234,324
_0238
Synpcc7942_0239: petJ - cytochrome C6 soluble cytochrome f, at 234,331 to 234,669
petJ
Synpcc7942_0240: apcD - hypothetical protein, at 234,851 to 235,342
apcD
Synpcc7942_0241: rumA - 23S rRNA (uracil-5-)-methyltransferase RumA, at 235,487 to 236,854
rumA
Position (kb) 234
235 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 233.343 kb on - strand, within Synpcc7942_0238 at 233.383 kb on + strand, within Synpcc7942_0238 at 233.496 kb on + strand, within Synpcc7942_0238 at 233.501 kb on + strand, within Synpcc7942_0238 at 233.504 kb on + strand, within Synpcc7942_0238 at 233.506 kb on + strand, within Synpcc7942_0238 at 233.506 kb on + strand, within Synpcc7942_0238 at 233.522 kb on - strand, within Synpcc7942_0238 at 233.538 kb on - strand, within Synpcc7942_0238 at 233.569 kb on + strand, within Synpcc7942_0238 at 233.598 kb on - strand, within Synpcc7942_0238 at 233.599 kb on + strand, within Synpcc7942_0238 at 233.617 kb on - strand, within Synpcc7942_0238 at 233.649 kb on + strand, within Synpcc7942_0238 at 233.662 kb on - strand, within Synpcc7942_0238 at 233.698 kb on - strand, within Synpcc7942_0238 at 233.712 kb on + strand at 233.778 kb on - strand, within Synpcc7942_0238 at 233.787 kb on + strand, within Synpcc7942_0238 at 233.790 kb on - strand, within Synpcc7942_0238 at 233.795 kb on - strand, within Synpcc7942_0238 at 233.795 kb on - strand, within Synpcc7942_0238 at 233.810 kb on + strand, within Synpcc7942_0238 at 233.840 kb on + strand, within Synpcc7942_0238 at 233.840 kb on + strand, within Synpcc7942_0238 at 233.840 kb on + strand, within Synpcc7942_0238 at 233.848 kb on - strand, within Synpcc7942_0238 at 233.848 kb on - strand, within Synpcc7942_0238 at 233.855 kb on + strand, within Synpcc7942_0238 at 233.863 kb on - strand, within Synpcc7942_0238 at 233.873 kb on - strand, within Synpcc7942_0238 at 233.880 kb on - strand, within Synpcc7942_0238 at 233.882 kb on + strand, within Synpcc7942_0238 at 233.884 kb on + strand, within Synpcc7942_0238 at 233.900 kb on - strand, within Synpcc7942_0238 at 233.901 kb on - strand, within Synpcc7942_0238 at 233.969 kb on - strand, within Synpcc7942_0238 at 234.011 kb on + strand, within Synpcc7942_0238 at 234.019 kb on - strand, within Synpcc7942_0238 at 234.036 kb on - strand, within Synpcc7942_0238 at 234.036 kb on - strand, within Synpcc7942_0238 at 234.036 kb on - strand, within Synpcc7942_0238 at 234.041 kb on - strand, within Synpcc7942_0238 at 234.041 kb on - strand, within Synpcc7942_0238 at 234.051 kb on - strand, within Synpcc7942_0238 at 234.051 kb on - strand, within Synpcc7942_0238 at 234.074 kb on - strand, within Synpcc7942_0238 at 234.075 kb on - strand, within Synpcc7942_0238 at 234.075 kb on - strand, within Synpcc7942_0238 at 234.075 kb on - strand, within Synpcc7942_0238 at 234.075 kb on - strand, within Synpcc7942_0238 at 234.080 kb on + strand, within Synpcc7942_0238 at 234.129 kb on + strand, within Synpcc7942_0238 at 234.137 kb on - strand, within Synpcc7942_0238 at 234.139 kb on + strand, within Synpcc7942_0238 at 234.139 kb on + strand, within Synpcc7942_0238 at 234.139 kb on + strand, within Synpcc7942_0238 at 234.147 kb on - strand, within Synpcc7942_0238 at 234.147 kb on - strand at 234.147 kb on - strand, within Synpcc7942_0238 at 234.147 kb on - strand, within Synpcc7942_0238 at 234.147 kb on - strand, within Synpcc7942_0238 at 234.147 kb on - strand at 234.147 kb on - strand, within Synpcc7942_0238 at 234.147 kb on - strand, within Synpcc7942_0238 at 234.147 kb on - strand, within Synpcc7942_0238 at 234.149 kb on + strand at 234.149 kb on + strand, within Synpcc7942_0238 at 234.149 kb on + strand, within Synpcc7942_0238 at 234.149 kb on + strand, within Synpcc7942_0238 at 234.154 kb on + strand, within Synpcc7942_0238 at 234.157 kb on - strand, within Synpcc7942_0238 at 234.182 kb on + strand, within Synpcc7942_0238 at 234.182 kb on + strand, within Synpcc7942_0238 at 234.185 kb on - strand, within Synpcc7942_0238 at 234.185 kb on - strand, within Synpcc7942_0238 at 234.185 kb on - strand, within Synpcc7942_0238 at 234.185 kb on - strand, within Synpcc7942_0238 at 234.190 kb on - strand at 234.190 kb on - strand, within Synpcc7942_0238 at 234.190 kb on - strand, within Synpcc7942_0238 at 234.192 kb on + strand, within Synpcc7942_0238 at 234.192 kb on + strand, within Synpcc7942_0238 at 234.200 kb on - strand, within Synpcc7942_0238 at 234.200 kb on - strand, within Synpcc7942_0238 at 234.200 kb on - strand, within Synpcc7942_0238 at 234.200 kb on - strand, within Synpcc7942_0238 at 234.215 kb on + strand at 234.223 kb on - strand at 234.231 kb on + strand at 234.246 kb on + strand at 234.251 kb on + strand at 234.253 kb on + strand at 234.254 kb on - strand at 234.259 kb on - strand at 234.259 kb on - strand at 234.273 kb on + strand at 234.273 kb on + strand at 234.281 kb on - strand at 234.282 kb on + strand at 234.299 kb on + strand at 234.299 kb on + strand at 234.299 kb on + strand at 234.312 kb on - strand at 234.317 kb on - strand at 234.317 kb on - strand at 234.317 kb on - strand at 234.317 kb on - strand at 234.317 kb on - strand at 234.339 kb on - strand at 234.341 kb on + strand at 234.349 kb on - strand at 234.349 kb on - strand at 234.391 kb on - strand, within petJ at 234.398 kb on + strand, within petJ at 234.398 kb on + strand, within petJ at 234.398 kb on + strand, within petJ at 234.401 kb on - strand, within petJ at 234.401 kb on - strand, within petJ at 234.401 kb on - strand, within petJ at 234.401 kb on - strand, within petJ at 234.406 kb on - strand, within petJ at 234.406 kb on - strand, within petJ at 234.412 kb on + strand, within petJ at 234.478 kb on - strand, within petJ at 234.480 kb on - strand, within petJ at 234.482 kb on - strand, within petJ at 234.487 kb on + strand, within petJ at 234.487 kb on + strand, within petJ at 234.495 kb on - strand, within petJ at 234.563 kb on + strand, within petJ at 234.581 kb on - strand, within petJ at 234.581 kb on - strand, within petJ at 234.614 kb on + strand, within petJ at 234.614 kb on + strand, within petJ at 234.614 kb on + strand, within petJ at 234.620 kb on + strand, within petJ at 234.646 kb on + strand at 234.646 kb on + strand at 234.646 kb on + strand at 234.646 kb on + strand at 234.646 kb on + strand at 234.654 kb on - strand at 234.654 kb on - strand at 234.654 kb on - strand at 234.794 kb on + strand at 234.795 kb on - strand at 234.839 kb on + strand at 234.848 kb on + strand at 234.849 kb on + strand at 234.857 kb on - strand at 234.915 kb on + strand, within apcD at 234.917 kb on + strand, within apcD at 234.920 kb on + strand, within apcD at 234.920 kb on - strand, within apcD at 234.923 kb on - strand, within apcD at 234.923 kb on - strand, within apcD at 234.925 kb on + strand, within apcD at 234.925 kb on - strand, within apcD at 234.982 kb on + strand, within apcD at 234.992 kb on - strand, within apcD at 235.008 kb on + strand, within apcD at 235.013 kb on + strand, within apcD at 235.013 kb on + strand, within apcD at 235.018 kb on + strand, within apcD at 235.021 kb on - strand, within apcD at 235.026 kb on - strand, within apcD at 235.026 kb on - strand, within apcD at 235.047 kb on - strand, within apcD at 235.049 kb on + strand, within apcD at 235.057 kb on - strand, within apcD at 235.057 kb on - strand, within apcD at 235.103 kb on - strand, within apcD at 235.107 kb on - strand, within apcD at 235.109 kb on + strand, within apcD at 235.113 kb on - strand, within apcD at 235.114 kb on + strand, within apcD at 235.120 kb on + strand, within apcD at 235.142 kb on - strand, within apcD at 235.181 kb on + strand, within apcD at 235.220 kb on - strand, within apcD at 235.220 kb on - strand, within apcD at 235.263 kb on + strand, within apcD at 235.276 kb on - strand, within apcD at 235.335 kb on - strand at 235.374 kb on - strand at 235.376 kb on - strand at 235.384 kb on - strand at 235.415 kb on - strand at 235.447 kb on - strand at 235.447 kb on - strand at 235.468 kb on - strand at 235.473 kb on + strand at 235.478 kb on - strand at 235.491 kb on - strand at 235.550 kb on + strand at 235.550 kb on + strand at 235.558 kb on - strand at 235.576 kb on - strand at 235.588 kb on - strand at 235.593 kb on - strand at 235.608 kb on + strand at 235.608 kb on + strand at 235.666 kb on - strand, within rumA
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 50 mM remove 233,343 - Synpcc7942_0238 0.17 -1.1 233,383 + Synpcc7942_0238 0.20 +0.9 233,496 + Synpcc7942_0238 0.30 +3.4 233,501 + Synpcc7942_0238 0.30 +1.8 233,504 + Synpcc7942_0238 0.31 +2.4 233,506 + Synpcc7942_0238 0.31 +3.1 233,506 + Synpcc7942_0238 0.31 +2.7 233,522 - Synpcc7942_0238 0.32 +3.1 233,538 - Synpcc7942_0238 0.33 +0.9 233,569 + Synpcc7942_0238 0.36 -1.1 233,598 - Synpcc7942_0238 0.38 +3.6 233,599 + Synpcc7942_0238 0.39 -0.1 233,617 - Synpcc7942_0238 0.40 +1.2 233,649 + Synpcc7942_0238 0.43 -1.7 233,662 - Synpcc7942_0238 0.44 +0.6 233,698 - Synpcc7942_0238 0.47 +0.5 233,712 + -0.1 233,778 - Synpcc7942_0238 0.54 -2.4 233,787 + Synpcc7942_0238 0.54 +2.6 233,790 - Synpcc7942_0238 0.55 -2.1 233,795 - Synpcc7942_0238 0.55 -2.4 233,795 - Synpcc7942_0238 0.55 +0.1 233,810 + Synpcc7942_0238 0.56 +4.3 233,840 + Synpcc7942_0238 0.59 -2.4 233,840 + Synpcc7942_0238 0.59 -1.1 233,840 + Synpcc7942_0238 0.59 +2.8 233,848 - Synpcc7942_0238 0.60 +2.3 233,848 - Synpcc7942_0238 0.60 +3.4 233,855 + Synpcc7942_0238 0.60 +1.1 233,863 - Synpcc7942_0238 0.61 -0.1 233,873 - Synpcc7942_0238 0.62 +1.8 233,880 - Synpcc7942_0238 0.62 +2.9 233,882 + Synpcc7942_0238 0.63 -0.1 233,884 + Synpcc7942_0238 0.63 +2.2 233,900 - Synpcc7942_0238 0.64 -2.1 233,901 - Synpcc7942_0238 0.64 +2.3 233,969 - Synpcc7942_0238 0.70 -1.7 234,011 + Synpcc7942_0238 0.73 -1.7 234,019 - Synpcc7942_0238 0.74 +1.7 234,036 - Synpcc7942_0238 0.76 +1.7 234,036 - Synpcc7942_0238 0.76 -1.1 234,036 - Synpcc7942_0238 0.76 +0.6 234,041 - Synpcc7942_0238 0.76 -2.1 234,041 - Synpcc7942_0238 0.76 +2.0 234,051 - Synpcc7942_0238 0.77 +3.1 234,051 - Synpcc7942_0238 0.77 -0.1 234,074 - Synpcc7942_0238 0.79 +2.6 234,075 - Synpcc7942_0238 0.79 +4.1 234,075 - Synpcc7942_0238 0.79 +5.6 234,075 - Synpcc7942_0238 0.79 -0.5 234,075 - Synpcc7942_0238 0.79 -1.7 234,080 + Synpcc7942_0238 0.79 +1.9 234,129 + Synpcc7942_0238 0.83 -1.1 234,137 - Synpcc7942_0238 0.84 +2.1 234,139 + Synpcc7942_0238 0.84 +1.5 234,139 + Synpcc7942_0238 0.84 +3.8 234,139 + Synpcc7942_0238 0.84 -0.7 234,147 - Synpcc7942_0238 0.85 -1.1 234,147 - -0.1 234,147 - Synpcc7942_0238 0.85 +1.9 234,147 - Synpcc7942_0238 0.85 +0.9 234,147 - Synpcc7942_0238 0.85 -1.1 234,147 - -0.1 234,147 - Synpcc7942_0238 0.85 +1.1 234,147 - Synpcc7942_0238 0.85 +2.1 234,147 - Synpcc7942_0238 0.85 -0.6 234,149 + -0.1 234,149 + Synpcc7942_0238 0.85 -0.5 234,149 + Synpcc7942_0238 0.85 +1.5 234,149 + Synpcc7942_0238 0.85 -0.4 234,154 + Synpcc7942_0238 0.86 +3.8 234,157 - Synpcc7942_0238 0.86 -0.1 234,182 + Synpcc7942_0238 0.88 +0.9 234,182 + Synpcc7942_0238 0.88 -1.1 234,185 - Synpcc7942_0238 0.88 -0.1 234,185 - Synpcc7942_0238 0.88 +3.4 234,185 - Synpcc7942_0238 0.88 +1.0 234,185 - Synpcc7942_0238 0.88 -1.7 234,190 - -0.1 234,190 - Synpcc7942_0238 0.89 -0.1 234,190 - Synpcc7942_0238 0.89 +1.6 234,192 + Synpcc7942_0238 0.89 -0.1 234,192 + Synpcc7942_0238 0.89 +3.8 234,200 - Synpcc7942_0238 0.89 +2.2 234,200 - Synpcc7942_0238 0.89 +0.9 234,200 - Synpcc7942_0238 0.89 -0.1 234,200 - Synpcc7942_0238 0.89 -0.1 234,215 + -1.7 234,223 - +2.0 234,231 + -0.1 234,246 + -1.8 234,251 + +4.2 234,253 + +0.9 234,254 - +0.7 234,259 - -1.1 234,259 - +0.2 234,273 + -0.1 234,273 + -0.1 234,281 - -0.1 234,282 + -2.1 234,299 + +4.6 234,299 + -2.1 234,299 + +3.7 234,312 - +3.6 234,317 - +0.6 234,317 - +2.2 234,317 - +2.5 234,317 - -0.1 234,317 - -0.1 234,339 - +2.1 234,341 + +2.5 234,349 - -0.1 234,349 - -0.7 234,391 - petJ Synpcc7942_0239 0.18 +1.2 234,398 + petJ Synpcc7942_0239 0.20 +2.9 234,398 + petJ Synpcc7942_0239 0.20 +1.3 234,398 + petJ Synpcc7942_0239 0.20 +1.1 234,401 - petJ Synpcc7942_0239 0.21 -2.1 234,401 - petJ Synpcc7942_0239 0.21 -1.1 234,401 - petJ Synpcc7942_0239 0.21 +0.3 234,401 - petJ Synpcc7942_0239 0.21 -0.6 234,406 - petJ Synpcc7942_0239 0.22 +3.4 234,406 - petJ Synpcc7942_0239 0.22 +2.1 234,412 + petJ Synpcc7942_0239 0.24 -0.5 234,478 - petJ Synpcc7942_0239 0.43 -2.4 234,480 - petJ Synpcc7942_0239 0.44 +3.1 234,482 - petJ Synpcc7942_0239 0.45 -0.2 234,487 + petJ Synpcc7942_0239 0.46 +4.6 234,487 + petJ Synpcc7942_0239 0.46 +0.6 234,495 - petJ Synpcc7942_0239 0.48 +3.5 234,563 + petJ Synpcc7942_0239 0.68 -1.1 234,581 - petJ Synpcc7942_0239 0.74 -0.1 234,581 - petJ Synpcc7942_0239 0.74 +0.7 234,614 + petJ Synpcc7942_0239 0.83 +2.7 234,614 + petJ Synpcc7942_0239 0.83 +4.7 234,614 + petJ Synpcc7942_0239 0.83 +5.1 234,620 + petJ Synpcc7942_0239 0.85 +0.5 234,646 + +2.7 234,646 + +4.1 234,646 + +0.8 234,646 + +4.2 234,646 + -1.7 234,654 - -0.1 234,654 - +2.5 234,654 - -2.1 234,794 + +3.0 234,795 - +3.8 234,839 + +3.3 234,848 + -0.3 234,849 + +3.1 234,857 - -1.1 234,915 + apcD Synpcc7942_0240 0.13 +2.4 234,917 + apcD Synpcc7942_0240 0.13 +1.6 234,920 + apcD Synpcc7942_0240 0.14 +1.9 234,920 - apcD Synpcc7942_0240 0.14 +3.7 234,923 - apcD Synpcc7942_0240 0.15 -0.1 234,923 - apcD Synpcc7942_0240 0.15 -1.7 234,925 + apcD Synpcc7942_0240 0.15 +2.2 234,925 - apcD Synpcc7942_0240 0.15 +0.9 234,982 + apcD Synpcc7942_0240 0.27 -1.7 234,992 - apcD Synpcc7942_0240 0.29 +1.0 235,008 + apcD Synpcc7942_0240 0.32 -0.2 235,013 + apcD Synpcc7942_0240 0.33 -1.1 235,013 + apcD Synpcc7942_0240 0.33 +2.0 235,018 + apcD Synpcc7942_0240 0.34 -1.1 235,021 - apcD Synpcc7942_0240 0.35 -1.1 235,026 - apcD Synpcc7942_0240 0.36 +0.9 235,026 - apcD Synpcc7942_0240 0.36 -2.1 235,047 - apcD Synpcc7942_0240 0.40 -1.1 235,049 + apcD Synpcc7942_0240 0.40 -1.7 235,057 - apcD Synpcc7942_0240 0.42 -0.1 235,057 - apcD Synpcc7942_0240 0.42 -2.4 235,103 - apcD Synpcc7942_0240 0.51 +4.7 235,107 - apcD Synpcc7942_0240 0.52 +1.5 235,109 + apcD Synpcc7942_0240 0.52 +1.7 235,113 - apcD Synpcc7942_0240 0.53 -2.7 235,114 + apcD Synpcc7942_0240 0.53 -0.1 235,120 + apcD Synpcc7942_0240 0.55 -0.1 235,142 - apcD Synpcc7942_0240 0.59 -2.1 235,181 + apcD Synpcc7942_0240 0.67 +2.5 235,220 - apcD Synpcc7942_0240 0.75 -1.7 235,220 - apcD Synpcc7942_0240 0.75 -0.1 235,263 + apcD Synpcc7942_0240 0.84 +0.5 235,276 - apcD Synpcc7942_0240 0.86 +3.2 235,335 - +1.5 235,374 - -1.1 235,376 - +0.6 235,384 - +0.9 235,415 - -1.1 235,447 - -0.1 235,447 - +2.4 235,468 - +0.9 235,473 + -0.1 235,478 - -1.1 235,491 - +0.5 235,550 + +1.6 235,550 + -0.1 235,558 - +1.7 235,576 - +4.2 235,588 - +0.9 235,593 - -1.1 235,608 + +1.9 235,608 + -0.1 235,666 - rumA Synpcc7942_0241 0.13 -0.1
Or see this region's nucleotide sequence