Experiment: nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0054 and Synpcc7942_0055 are separated by 32 nucleotides Synpcc7942_0055 and rfbE are separated by 34 nucleotides rfbE and Synpcc7942_0057 are separated by 3 nucleotides
Synpcc7942_0054: Synpcc7942_0054 - hypothetical protein, at 56,423 to 57,190
_0054
Synpcc7942_0055: Synpcc7942_0055 - hypothetical protein, at 57,223 to 57,906
_0055
Synpcc7942_0056: rfbE - perosamine synthetase, at 57,941 to 59,068
rfbE
Synpcc7942_0057: Synpcc7942_0057 - putative C-3 methyl transferase, at 59,072 to 60,304
_0057
Position (kb) 57
58
59
60 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 56.953 kb on + strand, within Synpcc7942_0054 at 56.961 kb on - strand, within Synpcc7942_0054 at 57.014 kb on + strand, within Synpcc7942_0054 at 57.014 kb on - strand, within Synpcc7942_0054 at 57.022 kb on - strand, within Synpcc7942_0054 at 57.147 kb on + strand at 57.278 kb on + strand at 57.329 kb on - strand, within Synpcc7942_0055 at 57.386 kb on + strand, within Synpcc7942_0055 at 57.483 kb on - strand, within Synpcc7942_0055 at 57.528 kb on - strand, within Synpcc7942_0055 at 57.687 kb on - strand, within Synpcc7942_0055 at 58.021 kb on + strand at 58.064 kb on + strand, within rfbE at 58.067 kb on - strand, within rfbE at 58.071 kb on + strand, within rfbE at 58.221 kb on - strand, within rfbE at 58.258 kb on + strand at 58.276 kb on - strand, within rfbE at 58.484 kb on + strand, within rfbE at 58.545 kb on + strand, within rfbE at 58.568 kb on + strand, within rfbE at 58.706 kb on + strand, within rfbE at 58.717 kb on + strand, within rfbE at 58.828 kb on + strand, within rfbE at 58.864 kb on - strand, within rfbE at 58.884 kb on - strand, within rfbE at 59.064 kb on + strand at 59.203 kb on + strand, within Synpcc7942_0057 at 59.203 kb on + strand, within Synpcc7942_0057 at 59.211 kb on - strand, within Synpcc7942_0057 at 59.318 kb on + strand, within Synpcc7942_0057 at 59.319 kb on + strand, within Synpcc7942_0057 at 59.326 kb on - strand, within Synpcc7942_0057 at 59.491 kb on + strand, within Synpcc7942_0057 at 59.503 kb on + strand, within Synpcc7942_0057 at 59.511 kb on - strand, within Synpcc7942_0057 at 59.561 kb on - strand, within Synpcc7942_0057 at 59.571 kb on - strand, within Synpcc7942_0057 at 59.620 kb on + strand, within Synpcc7942_0057 at 59.622 kb on - strand, within Synpcc7942_0057 at 59.628 kb on - strand, within Synpcc7942_0057 at 59.646 kb on - strand, within Synpcc7942_0057 at 59.660 kb on - strand, within Synpcc7942_0057 at 59.677 kb on + strand, within Synpcc7942_0057 at 59.677 kb on + strand, within Synpcc7942_0057 at 59.718 kb on + strand, within Synpcc7942_0057 at 59.719 kb on - strand, within Synpcc7942_0057 at 59.752 kb on + strand, within Synpcc7942_0057 at 59.779 kb on - strand, within Synpcc7942_0057 at 59.843 kb on + strand, within Synpcc7942_0057 at 59.846 kb on - strand, within Synpcc7942_0057 at 59.908 kb on - strand, within Synpcc7942_0057 at 59.920 kb on + strand, within Synpcc7942_0057 at 59.928 kb on - strand, within Synpcc7942_0057 at 59.950 kb on + strand, within Synpcc7942_0057 at 59.956 kb on - strand, within Synpcc7942_0057 at 59.958 kb on - strand, within Synpcc7942_0057 at 59.973 kb on - strand, within Synpcc7942_0057 at 60.011 kb on + strand, within Synpcc7942_0057 at 60.017 kb on + strand, within Synpcc7942_0057 at 60.018 kb on - strand, within Synpcc7942_0057 at 60.047 kb on + strand, within Synpcc7942_0057 at 60.066 kb on - strand, within Synpcc7942_0057 at 60.066 kb on - strand, within Synpcc7942_0057
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 50 mM remove 56,953 + Synpcc7942_0054 0.69 +0.3 56,961 - Synpcc7942_0054 0.70 +3.3 57,014 + Synpcc7942_0054 0.77 -2.1 57,014 - Synpcc7942_0054 0.77 -2.1 57,022 - Synpcc7942_0054 0.78 -1.1 57,147 + +2.4 57,278 + +2.5 57,329 - Synpcc7942_0055 0.15 +1.4 57,386 + Synpcc7942_0055 0.24 +1.0 57,483 - Synpcc7942_0055 0.38 +3.5 57,528 - Synpcc7942_0055 0.45 +3.0 57,687 - Synpcc7942_0055 0.68 -1.1 58,021 + -2.7 58,064 + rfbE Synpcc7942_0056 0.11 -1.1 58,067 - rfbE Synpcc7942_0056 0.11 +1.4 58,071 + rfbE Synpcc7942_0056 0.12 -1.1 58,221 - rfbE Synpcc7942_0056 0.25 -0.7 58,258 + -0.1 58,276 - rfbE Synpcc7942_0056 0.30 +3.2 58,484 + rfbE Synpcc7942_0056 0.48 +2.0 58,545 + rfbE Synpcc7942_0056 0.54 +2.6 58,568 + rfbE Synpcc7942_0056 0.56 -2.1 58,706 + rfbE Synpcc7942_0056 0.68 -0.1 58,717 + rfbE Synpcc7942_0056 0.69 +0.4 58,828 + rfbE Synpcc7942_0056 0.79 +0.6 58,864 - rfbE Synpcc7942_0056 0.82 -1.1 58,884 - rfbE Synpcc7942_0056 0.84 +1.6 59,064 + +1.1 59,203 + Synpcc7942_0057 0.11 -1.7 59,203 + Synpcc7942_0057 0.11 +2.7 59,211 - Synpcc7942_0057 0.11 -2.1 59,318 + Synpcc7942_0057 0.20 -0.1 59,319 + Synpcc7942_0057 0.20 -2.1 59,326 - Synpcc7942_0057 0.21 -0.8 59,491 + Synpcc7942_0057 0.34 +2.3 59,503 + Synpcc7942_0057 0.35 +3.1 59,511 - Synpcc7942_0057 0.36 -2.1 59,561 - Synpcc7942_0057 0.40 -2.4 59,571 - Synpcc7942_0057 0.40 -2.1 59,620 + Synpcc7942_0057 0.44 +0.9 59,622 - Synpcc7942_0057 0.45 -1.1 59,628 - Synpcc7942_0057 0.45 -0.1 59,646 - Synpcc7942_0057 0.47 -1.1 59,660 - Synpcc7942_0057 0.48 +2.4 59,677 + Synpcc7942_0057 0.49 +0.9 59,677 + Synpcc7942_0057 0.49 -1.7 59,718 + Synpcc7942_0057 0.52 -0.1 59,719 - Synpcc7942_0057 0.52 +4.7 59,752 + Synpcc7942_0057 0.55 +0.6 59,779 - Synpcc7942_0057 0.57 +2.8 59,843 + Synpcc7942_0057 0.63 +4.3 59,846 - Synpcc7942_0057 0.63 +1.5 59,908 - Synpcc7942_0057 0.68 -0.1 59,920 + Synpcc7942_0057 0.69 +3.1 59,928 - Synpcc7942_0057 0.69 -1.1 59,950 + Synpcc7942_0057 0.71 +1.5 59,956 - Synpcc7942_0057 0.72 -1.1 59,958 - Synpcc7942_0057 0.72 +1.6 59,973 - Synpcc7942_0057 0.73 +0.5 60,011 + Synpcc7942_0057 0.76 +2.7 60,017 + Synpcc7942_0057 0.77 -0.9 60,018 - Synpcc7942_0057 0.77 +2.9 60,047 + Synpcc7942_0057 0.79 +0.4 60,066 - Synpcc7942_0057 0.81 +2.6 60,066 - Synpcc7942_0057 0.81 +0.9
Or see this region's nucleotide sequence