Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01119 and SMc01118 are separated by 236 nucleotides SMc01118 and SMc01117 are separated by 54 nucleotides SMc01117 and SMc01116 are separated by 119 nucleotides
SMc01119: SMc01119 - hypothetical protein, at 436,305 to 436,871
SMc01119
SMc01118: SMc01118 - hypothetical protein, at 437,108 to 437,764
SMc01118
SMc01117: SMc01117 - acetyltransferase, at 437,819 to 438,322
SMc01117
SMc01116: SMc01116 - acyltransferase transmembrane protein, at 438,442 to 439,320
SMc01116
Position (kb) 437
438
439 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 436.950 kb on - strand at 436.950 kb on - strand at 436.950 kb on - strand at 436.965 kb on - strand at 437.786 kb on + strand at 437.786 kb on + strand at 438.376 kb on + strand at 438.385 kb on - strand at 438.675 kb on + strand, within SMc01116 at 438.676 kb on - strand, within SMc01116 at 439.027 kb on + strand, within SMc01116 at 439.027 kb on + strand, within SMc01116 at 439.141 kb on + strand, within SMc01116 at 439.141 kb on + strand, within SMc01116 at 439.142 kb on - strand, within SMc01116 at 439.169 kb on + strand, within SMc01116 at 439.170 kb on - strand, within SMc01116 at 439.170 kb on - strand, within SMc01116
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 436,950 - -2.2 436,950 - -1.5 436,950 - -0.1 436,965 - -3.2 437,786 + +0.9 437,786 + +0.0 438,376 + -1.1 438,385 - +0.1 438,675 + SMc01116 0.27 -1.3 438,676 - SMc01116 0.27 -1.0 439,027 + SMc01116 0.67 +1.1 439,027 + SMc01116 0.67 -1.0 439,141 + SMc01116 0.80 -1.6 439,141 + SMc01116 0.80 -1.0 439,142 - SMc01116 0.80 +0.4 439,169 + SMc01116 0.83 -0.8 439,170 - SMc01116 0.83 +0.4 439,170 - SMc01116 0.83 +1.0
Or see this region's nucleotide sequence