Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00352 and SMc00353 are separated by 35 nucleotides SMc00353 and SMc00354 are separated by 176 nucleotides SMc00354 and SMc00355 are separated by 317 nucleotides
SMc00352: SMc00352 - acetyltransferase, at 307,543 to 308,070
SMc00352
SMc00353: SMc00353 - transmembrane protein, at 308,106 to 308,828
SMc00353
SMc00354: SMc00354 - hypothetical protein, at 309,005 to 309,670
SMc00354
SMc00355: SMc00355 - hypothetical protein, at 309,988 to 311,040
SMc00355
Position (kb) 309
310 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 308.030 kb on - strand at 308.050 kb on + strand at 308.068 kb on + strand at 308.068 kb on + strand at 308.068 kb on + strand at 308.069 kb on - strand at 308.069 kb on - strand at 308.069 kb on - strand at 308.069 kb on - strand at 308.069 kb on - strand at 308.155 kb on + strand at 308.398 kb on + strand, within SMc00353 at 308.399 kb on - strand, within SMc00353 at 308.399 kb on - strand, within SMc00353 at 308.803 kb on - strand at 308.911 kb on - strand at 308.929 kb on + strand at 308.929 kb on + strand at 308.962 kb on + strand at 308.965 kb on + strand at 308.965 kb on + strand at 308.965 kb on + strand at 309.822 kb on - strand at 309.862 kb on + strand at 309.877 kb on + strand at 309.904 kb on + strand at 310.041 kb on - strand at 310.118 kb on + strand, within SMc00355 at 310.238 kb on + strand, within SMc00355 at 310.421 kb on + strand, within SMc00355 at 310.421 kb on + strand, within SMc00355 at 310.421 kb on + strand, within SMc00355 at 310.421 kb on + strand, within SMc00355 at 310.422 kb on - strand, within SMc00355 at 310.422 kb on - strand, within SMc00355 at 310.422 kb on - strand, within SMc00355 at 310.634 kb on + strand, within SMc00355
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 308,030 - -3.0 308,050 + -3.5 308,068 + -0.6 308,068 + -0.5 308,068 + -5.0 308,069 - +1.0 308,069 - -3.9 308,069 - +0.4 308,069 - +0.8 308,069 - +0.6 308,155 + -0.4 308,398 + SMc00353 0.40 -2.7 308,399 - SMc00353 0.41 +0.4 308,399 - SMc00353 0.41 -0.5 308,803 - -1.9 308,911 - +5.0 308,929 + -3.2 308,929 + -1.2 308,962 + -0.2 308,965 + -4.0 308,965 + +0.2 308,965 + -0.3 309,822 - -0.5 309,862 + +0.3 309,877 + +1.1 309,904 + -2.3 310,041 - +1.0 310,118 + SMc00355 0.12 -1.6 310,238 + SMc00355 0.24 -0.8 310,421 + SMc00355 0.41 +0.7 310,421 + SMc00355 0.41 +0.7 310,421 + SMc00355 0.41 +1.4 310,421 + SMc00355 0.41 +1.1 310,422 - SMc00355 0.41 -1.1 310,422 - SMc00355 0.41 +1.5 310,422 - SMc00355 0.41 +0.1 310,634 + SMc00355 0.61 -1.9
Or see this region's nucleotide sequence