Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1462 and SMa1465 are separated by 23 nucleotides SMa1465 and SMa1466 overlap by 4 nucleotides SMa1466 and SMa1467 overlap by 4 nucleotides SMa1467 and SMa1471 are separated by 150 nucleotides
SMa1462: SMa1462 - ABC transporter, at 805,588 to 806,478
SMa1462
SMa1465: SMa1465 - ABC transporter permease, at 806,502 to 807,257
SMa1465
SMa1466: SMa1466 - ABC transporter ATP-binding protein, at 807,254 to 808,369
SMa1466
SMa1467: SMa1467 - inner-membrane permease, at 808,366 to 809,028
SMa1467
SMa1471: SMa1471 - hypothetical protein, at 809,179 to 809,859
SMa1471
Position (kb) 807
808
809 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 806.503 kb on + strand at 806.537 kb on - strand at 806.540 kb on - strand at 806.845 kb on + strand, within SMa1465 at 806.845 kb on + strand, within SMa1465 at 806.846 kb on - strand, within SMa1465 at 806.846 kb on - strand, within SMa1465 at 806.846 kb on - strand, within SMa1465 at 806.907 kb on - strand, within SMa1465 at 807.103 kb on + strand, within SMa1465 at 807.121 kb on + strand, within SMa1465 at 807.280 kb on - strand at 807.280 kb on - strand at 807.297 kb on + strand at 807.708 kb on + strand, within SMa1466 at 807.708 kb on + strand, within SMa1466 at 807.737 kb on - strand, within SMa1466 at 807.737 kb on - strand, within SMa1466 at 808.072 kb on + strand, within SMa1466 at 808.123 kb on - strand, within SMa1466 at 808.286 kb on + strand at 808.544 kb on + strand, within SMa1467 at 808.545 kb on - strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.716 kb on - strand, within SMa1467 at 808.716 kb on - strand, within SMa1467 at 808.716 kb on - strand, within SMa1467 at 808.745 kb on + strand, within SMa1467 at 808.760 kb on - strand, within SMa1467 at 808.775 kb on + strand, within SMa1467 at 808.775 kb on + strand, within SMa1467 at 808.776 kb on - strand, within SMa1467 at 808.987 kb on + strand at 808.988 kb on - strand at 809.050 kb on - strand at 809.050 kb on - strand at 809.167 kb on + strand at 809.220 kb on - strand at 809.263 kb on - strand, within SMa1471 at 809.263 kb on - strand, within SMa1471 at 809.315 kb on + strand, within SMa1471 at 809.316 kb on - strand, within SMa1471 at 809.316 kb on - strand, within SMa1471 at 809.316 kb on - strand, within SMa1471
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 806,503 + +0.2 806,537 - -0.4 806,540 - +2.1 806,845 + SMa1465 0.45 -0.1 806,845 + SMa1465 0.45 -2.8 806,846 - SMa1465 0.46 +1.2 806,846 - SMa1465 0.46 -1.2 806,846 - SMa1465 0.46 +1.0 806,907 - SMa1465 0.54 -1.1 807,103 + SMa1465 0.79 -0.0 807,121 + SMa1465 0.82 +0.5 807,280 - -2.8 807,280 - +3.6 807,297 + -0.1 807,708 + SMa1466 0.41 +0.9 807,708 + SMa1466 0.41 +1.1 807,737 - SMa1466 0.43 +0.8 807,737 - SMa1466 0.43 -2.1 808,072 + SMa1466 0.73 +1.3 808,123 - SMa1466 0.78 +0.4 808,286 + +2.5 808,544 + SMa1467 0.27 +0.3 808,545 - SMa1467 0.27 +0.7 808,715 + SMa1467 0.53 -3.8 808,715 + SMa1467 0.53 -2.4 808,715 + SMa1467 0.53 +1.5 808,715 + SMa1467 0.53 +4.8 808,715 + SMa1467 0.53 +2.2 808,716 - SMa1467 0.53 -1.5 808,716 - SMa1467 0.53 +0.3 808,716 - SMa1467 0.53 +1.3 808,745 + SMa1467 0.57 -2.7 808,760 - SMa1467 0.59 -0.6 808,775 + SMa1467 0.62 -2.3 808,775 + SMa1467 0.62 -0.9 808,776 - SMa1467 0.62 -1.5 808,987 + -0.8 808,988 - -0.6 809,050 - -2.7 809,050 - -2.2 809,167 + -0.8 809,220 - +0.8 809,263 - SMa1471 0.12 -0.2 809,263 - SMa1471 0.12 +0.0 809,315 + SMa1471 0.20 -3.2 809,316 - SMa1471 0.20 -1.1 809,316 - SMa1471 0.20 -0.5 809,316 - SMa1471 0.20 -2.9
Or see this region's nucleotide sequence