Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0977 and SMa0981 are separated by 520 nucleotides SMa0981 and SMa0983 are separated by 148 nucleotides SMa0983 and SMa0985 are separated by 120 nucleotides
SMa0977: SMa0977 - TRm24 transposase, at 544,943 to 545,944
SMa0977
SMa0981: SMa0981 - NtrR2 transcription regulator, at 546,465 to 546,884
SMa0981
SMa0983: SMa0983 - hypothetical protein, at 547,033 to 547,404
SMa0983
SMa0985: SMa0985 - LysR family transcriptional regulator, at 547,525 to 548,370
SMa0985
Position (kb) 546
547 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 546.156 kb on + strand at 546.160 kb on + strand at 546.230 kb on + strand at 546.230 kb on + strand at 546.283 kb on - strand at 546.283 kb on - strand at 546.379 kb on + strand at 546.379 kb on + strand at 546.382 kb on + strand at 546.530 kb on + strand, within SMa0981 at 546.683 kb on + strand, within SMa0981 at 546.683 kb on + strand, within SMa0981 at 546.684 kb on - strand, within SMa0981 at 546.684 kb on - strand, within SMa0981 at 546.684 kb on - strand, within SMa0981 at 546.714 kb on + strand, within SMa0981 at 546.750 kb on + strand, within SMa0981 at 546.751 kb on - strand, within SMa0981 at 546.751 kb on - strand, within SMa0981 at 546.765 kb on - strand, within SMa0981 at 546.795 kb on + strand, within SMa0981 at 546.855 kb on - strand at 546.871 kb on + strand at 546.872 kb on - strand at 546.872 kb on - strand at 546.872 kb on - strand at 546.968 kb on + strand at 547.004 kb on + strand at 547.069 kb on + strand at 547.073 kb on + strand, within SMa0983 at 547.074 kb on - strand, within SMa0983 at 547.074 kb on - strand, within SMa0983 at 547.090 kb on + strand, within SMa0983 at 547.091 kb on - strand, within SMa0983 at 547.169 kb on + strand, within SMa0983 at 547.181 kb on + strand, within SMa0983 at 547.181 kb on + strand, within SMa0983 at 547.293 kb on + strand, within SMa0983 at 547.329 kb on + strand, within SMa0983 at 547.329 kb on + strand, within SMa0983 at 547.330 kb on - strand, within SMa0983 at 547.339 kb on + strand, within SMa0983 at 547.339 kb on + strand, within SMa0983 at 547.339 kb on + strand, within SMa0983 at 547.340 kb on - strand, within SMa0983 at 547.340 kb on - strand, within SMa0983 at 547.559 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 546,156 + +0.5 546,160 + -0.1 546,230 + +1.0 546,230 + -4.4 546,283 - -1.2 546,283 - +1.6 546,379 + +0.2 546,379 + +0.4 546,382 + -1.1 546,530 + SMa0981 0.15 +1.1 546,683 + SMa0981 0.52 +0.6 546,683 + SMa0981 0.52 -0.5 546,684 - SMa0981 0.52 -1.6 546,684 - SMa0981 0.52 +1.8 546,684 - SMa0981 0.52 -0.0 546,714 + SMa0981 0.59 +1.0 546,750 + SMa0981 0.68 +1.5 546,751 - SMa0981 0.68 -0.5 546,751 - SMa0981 0.68 +0.6 546,765 - SMa0981 0.71 +1.6 546,795 + SMa0981 0.79 -1.0 546,855 - -0.0 546,871 + -0.2 546,872 - -0.7 546,872 - +1.2 546,872 - -0.6 546,968 + -0.3 547,004 + +2.1 547,069 + -0.9 547,073 + SMa0983 0.11 +0.6 547,074 - SMa0983 0.11 -0.3 547,074 - SMa0983 0.11 -1.9 547,090 + SMa0983 0.15 -0.4 547,091 - SMa0983 0.16 -0.3 547,169 + SMa0983 0.37 +0.3 547,181 + SMa0983 0.40 +0.4 547,181 + SMa0983 0.40 +0.7 547,293 + SMa0983 0.70 -0.1 547,329 + SMa0983 0.80 -1.5 547,329 + SMa0983 0.80 -0.8 547,330 - SMa0983 0.80 -0.8 547,339 + SMa0983 0.82 +1.0 547,339 + SMa0983 0.82 +0.1 547,339 + SMa0983 0.82 +1.4 547,340 - SMa0983 0.83 +0.2 547,340 - SMa0983 0.83 +0.5 547,559 - +0.6
Or see this region's nucleotide sequence