Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0934 and SMa0937 are separated by 448 nucleotides SMa0937 and SMa0939 are separated by 292 nucleotides
SMa0934: SMa0934 - TraA1 conjugal transfer protein, at 515,693 to 520,312
SMa0934
SMa0937: SMa0937 - hypothetical protein, at 520,761 to 522,920
SMa0937
SMa0939: SMa0939 - sensor histidine kinase of two-component system, at 523,213 to 525,114
SMa0939
Position (kb) 520
521
522
523 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 520.317 kb on - strand at 520.317 kb on - strand at 520.364 kb on - strand at 520.364 kb on - strand at 520.442 kb on + strand at 520.443 kb on - strand at 520.610 kb on + strand at 520.610 kb on + strand at 520.610 kb on + strand at 520.612 kb on + strand at 520.612 kb on + strand at 520.612 kb on + strand at 520.645 kb on + strand at 520.762 kb on + strand at 521.633 kb on + strand, within SMa0937 at 521.637 kb on + strand, within SMa0937 at 521.637 kb on + strand, within SMa0937 at 521.743 kb on - strand, within SMa0937 at 521.832 kb on - strand, within SMa0937 at 521.875 kb on + strand, within SMa0937 at 521.875 kb on + strand, within SMa0937 at 521.875 kb on + strand, within SMa0937 at 521.875 kb on + strand, within SMa0937 at 521.875 kb on + strand, within SMa0937 at 521.876 kb on - strand, within SMa0937 at 521.876 kb on - strand, within SMa0937 at 521.876 kb on - strand, within SMa0937 at 522.011 kb on + strand, within SMa0937 at 522.057 kb on - strand, within SMa0937 at 522.834 kb on - strand at 522.951 kb on + strand at 522.952 kb on - strand at 522.952 kb on - strand at 523.093 kb on + strand at 523.093 kb on + strand at 523.094 kb on - strand at 523.094 kb on - strand at 523.094 kb on - strand at 523.111 kb on - strand at 523.116 kb on - strand at 523.127 kb on + strand at 523.155 kb on - strand at 523.373 kb on - strand at 523.373 kb on - strand at 523.405 kb on - strand, within SMa0939 at 523.520 kb on + strand, within SMa0939 at 523.544 kb on - strand, within SMa0939 at 523.724 kb on + strand, within SMa0939 at 523.857 kb on + strand, within SMa0939 at 523.870 kb on + strand, within SMa0939
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 520,317 - -3.1 520,317 - +0.2 520,364 - -1.6 520,364 - +0.2 520,442 + -1.3 520,443 - +3.4 520,610 + -0.4 520,610 + +0.1 520,610 + -1.0 520,612 + +0.5 520,612 + +0.6 520,612 + +0.5 520,645 + -0.6 520,762 + +0.6 521,633 + SMa0937 0.40 +1.2 521,637 + SMa0937 0.41 +5.4 521,637 + SMa0937 0.41 +0.4 521,743 - SMa0937 0.45 -1.0 521,832 - SMa0937 0.50 +1.3 521,875 + SMa0937 0.52 +0.6 521,875 + SMa0937 0.52 +0.8 521,875 + SMa0937 0.52 +2.3 521,875 + SMa0937 0.52 -0.4 521,875 + SMa0937 0.52 -1.8 521,876 - SMa0937 0.52 -0.4 521,876 - SMa0937 0.52 +1.0 521,876 - SMa0937 0.52 +0.2 522,011 + SMa0937 0.58 +0.8 522,057 - SMa0937 0.60 +0.7 522,834 - +0.4 522,951 + -0.8 522,952 - +1.7 522,952 - -0.6 523,093 + -1.2 523,093 + -0.3 523,094 - +0.1 523,094 - +0.5 523,094 - +0.5 523,111 - +1.0 523,116 - +0.3 523,127 + +0.2 523,155 - -1.1 523,373 - -1.2 523,373 - -0.1 523,405 - SMa0939 0.10 -0.8 523,520 + SMa0939 0.16 -2.5 523,544 - SMa0939 0.17 -1.9 523,724 + SMa0939 0.27 -0.1 523,857 + SMa0939 0.34 -0.1 523,870 + SMa0939 0.35 +2.6
Or see this region's nucleotide sequence