Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0892 and SMa0894 are separated by 116 nucleotides SMa0894 and SMa0896 are separated by 166 nucleotides SMa0896 and SMa0900 are separated by 590 nucleotides
SMa0892: SMa0892 - DnaE3 DNA polymerase III alpha chain, at 497,392 to 500,655
SMa0892
SMa0894: SMa0894 - hypothetical protein, at 500,772 to 501,068
SMa0894
SMa0896: SMa0896 - hypothetical protein, at 501,235 to 501,954
SMa0896
SMa0900: SMa0900 - anti-restriction protein, at 502,545 to 503,021
SMa0900
Position (kb) 501
502 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 500.597 kb on + strand at 500.597 kb on + strand at 500.597 kb on + strand at 500.597 kb on + strand at 500.598 kb on - strand at 500.598 kb on - strand at 500.598 kb on - strand at 500.598 kb on - strand at 500.598 kb on - strand at 500.617 kb on - strand at 500.689 kb on + strand at 500.707 kb on - strand at 500.869 kb on - strand, within SMa0894 at 500.869 kb on - strand, within SMa0894 at 501.149 kb on - strand at 501.263 kb on - strand at 501.263 kb on - strand at 501.366 kb on + strand, within SMa0896 at 501.492 kb on + strand, within SMa0896 at 501.637 kb on + strand, within SMa0896 at 501.638 kb on - strand, within SMa0896 at 501.707 kb on - strand, within SMa0896 at 501.770 kb on - strand, within SMa0896 at 501.770 kb on - strand, within SMa0896 at 501.816 kb on + strand, within SMa0896 at 501.816 kb on + strand, within SMa0896 at 501.817 kb on - strand, within SMa0896 at 501.817 kb on - strand, within SMa0896 at 501.817 kb on - strand, within SMa0896 at 501.836 kb on + strand, within SMa0896 at 501.912 kb on + strand at 501.913 kb on - strand at 501.913 kb on - strand at 502.040 kb on + strand at 502.335 kb on - strand at 502.391 kb on - strand at 502.592 kb on + strand at 502.593 kb on - strand, within SMa0900 at 502.716 kb on + strand, within SMa0900 at 502.717 kb on - strand, within SMa0900 at 502.717 kb on - strand, within SMa0900 at 502.719 kb on - strand, within SMa0900 at 502.719 kb on - strand, within SMa0900 at 502.749 kb on + strand, within SMa0900 at 502.750 kb on - strand, within SMa0900 at 502.773 kb on + strand, within SMa0900
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 500,597 + +0.1 500,597 + +0.3 500,597 + -1.0 500,597 + -0.6 500,598 - -0.9 500,598 - -1.9 500,598 - -0.2 500,598 - -3.1 500,598 - +1.9 500,617 - +1.6 500,689 + +0.8 500,707 - +0.4 500,869 - SMa0894 0.33 +0.1 500,869 - SMa0894 0.33 -0.5 501,149 - +0.3 501,263 - -0.1 501,263 - -3.5 501,366 + SMa0896 0.18 +0.7 501,492 + SMa0896 0.36 -2.1 501,637 + SMa0896 0.56 -0.2 501,638 - SMa0896 0.56 +1.0 501,707 - SMa0896 0.66 +2.5 501,770 - SMa0896 0.74 -0.6 501,770 - SMa0896 0.74 -3.9 501,816 + SMa0896 0.81 -0.5 501,816 + SMa0896 0.81 -0.4 501,817 - SMa0896 0.81 +0.4 501,817 - SMa0896 0.81 +0.6 501,817 - SMa0896 0.81 +0.4 501,836 + SMa0896 0.83 +1.4 501,912 + +1.0 501,913 - +0.7 501,913 - +1.8 502,040 + +0.4 502,335 - +0.8 502,391 - -0.7 502,592 + -0.6 502,593 - SMa0900 0.10 -0.4 502,716 + SMa0900 0.36 +0.3 502,717 - SMa0900 0.36 +0.8 502,717 - SMa0900 0.36 +1.5 502,719 - SMa0900 0.36 -1.9 502,719 - SMa0900 0.36 +1.0 502,749 + SMa0900 0.43 -1.0 502,750 - SMa0900 0.43 -0.8 502,773 + SMa0900 0.48 +0.6
Or see this region's nucleotide sequence