Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20511 and SM_b22021 are separated by 348 nucleotides SM_b22021 and SM_b20513 are separated by 94 nucleotides
SM_b20511: SM_b20511 - short-chain dehydrogenase, at 533,617 to 534,396
_b20511
SM_b22021: SM_b22021 - hypothetical protein, at 534,745 to 534,999
_b22021
SM_b20513: SM_b20513 - hypothetical protein, at 535,094 to 536,020
_b20513
Position (kb) 534
535 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 533.808 kb on + strand, within SM_b20511 at 533.811 kb on + strand, within SM_b20511 at 533.812 kb on - strand, within SM_b20511 at 533.952 kb on + strand, within SM_b20511 at 534.136 kb on + strand, within SM_b20511 at 534.136 kb on + strand, within SM_b20511 at 534.178 kb on + strand, within SM_b20511 at 534.205 kb on + strand, within SM_b20511 at 534.462 kb on + strand at 534.464 kb on + strand at 534.465 kb on - strand at 534.508 kb on + strand at 534.621 kb on + strand at 534.621 kb on + strand at 534.621 kb on + strand at 534.622 kb on - strand at 534.778 kb on + strand, within SM_b22021 at 534.778 kb on + strand, within SM_b22021 at 534.779 kb on - strand, within SM_b22021 at 534.779 kb on - strand, within SM_b22021 at 534.925 kb on + strand, within SM_b22021 at 534.926 kb on - strand, within SM_b22021 at 534.926 kb on - strand, within SM_b22021 at 534.928 kb on + strand, within SM_b22021 at 534.928 kb on + strand, within SM_b22021 at 534.929 kb on - strand, within SM_b22021 at 535.109 kb on + strand at 535.110 kb on - strand at 535.111 kb on + strand at 535.113 kb on + strand at 535.113 kb on + strand at 535.113 kb on + strand at 535.113 kb on + strand at 535.113 kb on + strand at 535.113 kb on + strand at 535.114 kb on - strand at 535.114 kb on - strand at 535.114 kb on - strand at 535.114 kb on - strand at 535.114 kb on - strand at 535.127 kb on + strand at 535.128 kb on - strand at 535.204 kb on + strand, within SM_b20513 at 535.204 kb on + strand, within SM_b20513 at 535.205 kb on - strand, within SM_b20513 at 535.402 kb on - strand, within SM_b20513 at 535.494 kb on + strand, within SM_b20513 at 535.495 kb on - strand, within SM_b20513 at 535.495 kb on - strand, within SM_b20513 at 535.580 kb on + strand, within SM_b20513 at 535.621 kb on - strand, within SM_b20513 at 535.822 kb on + strand, within SM_b20513 at 535.823 kb on - strand, within SM_b20513 at 535.868 kb on - strand, within SM_b20513 at 535.882 kb on + strand, within SM_b20513 at 535.882 kb on + strand at 535.883 kb on - strand, within SM_b20513 at 535.909 kb on - strand, within SM_b20513 at 535.967 kb on - strand at 535.985 kb on + strand at 535.985 kb on + strand at 535.986 kb on - strand at 535.986 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 533,808 + SM_b20511 0.24 -1.4 533,811 + SM_b20511 0.25 -1.0 533,812 - SM_b20511 0.25 -1.7 533,952 + SM_b20511 0.43 -5.1 534,136 + SM_b20511 0.67 -0.0 534,136 + SM_b20511 0.67 +0.7 534,178 + SM_b20511 0.72 -0.5 534,205 + SM_b20511 0.75 +0.4 534,462 + +0.2 534,464 + +1.2 534,465 - -0.2 534,508 + -0.2 534,621 + -0.3 534,621 + +0.4 534,621 + -2.7 534,622 - -0.4 534,778 + SM_b22021 0.13 +0.1 534,778 + SM_b22021 0.13 +0.6 534,779 - SM_b22021 0.13 +1.4 534,779 - SM_b22021 0.13 +0.4 534,925 + SM_b22021 0.71 +1.2 534,926 - SM_b22021 0.71 -1.8 534,926 - SM_b22021 0.71 +0.4 534,928 + SM_b22021 0.72 +0.8 534,928 + SM_b22021 0.72 +1.7 534,929 - SM_b22021 0.72 -0.4 535,109 + -3.3 535,110 - +1.6 535,111 + +1.0 535,113 + -3.0 535,113 + -1.1 535,113 + -2.5 535,113 + +0.2 535,113 + -1.2 535,113 + +1.6 535,114 - -0.4 535,114 - -2.1 535,114 - -1.9 535,114 - +0.6 535,114 - +1.6 535,127 + +1.4 535,128 - +0.7 535,204 + SM_b20513 0.12 +0.3 535,204 + SM_b20513 0.12 -1.7 535,205 - SM_b20513 0.12 +1.9 535,402 - SM_b20513 0.33 +0.6 535,494 + SM_b20513 0.43 -0.6 535,495 - SM_b20513 0.43 +0.8 535,495 - SM_b20513 0.43 -0.2 535,580 + SM_b20513 0.52 -2.4 535,621 - SM_b20513 0.57 -0.0 535,822 + SM_b20513 0.79 +1.5 535,823 - SM_b20513 0.79 -1.5 535,868 - SM_b20513 0.83 +0.5 535,882 + SM_b20513 0.85 -4.3 535,882 + +1.6 535,883 - SM_b20513 0.85 -1.5 535,909 - SM_b20513 0.88 +0.2 535,967 - +0.2 535,985 + -0.3 535,985 + -1.4 535,986 - -0.4 535,986 - -1.6
Or see this region's nucleotide sequence