Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20846 and SM_b21676 are separated by 266 nucleotides SM_b21676 and SM_b20847 are separated by 12 nucleotides
SM_b20846: SM_b20846 - xanthine dehydrogenase, at 1,246,623 to 1,248,959
_b20846
SM_b21676: SM_b21676 - hypothetical protein, at 1,249,226 to 1,249,519
_b21676
SM_b20847: SM_b20847 - LysR family transcriptional regulator, at 1,249,532 to 1,250,431
_b20847
Position (kb)
1249
1250 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 1248.387 kb on + strand, within SM_b20846 at 1248.388 kb on - strand, within SM_b20846 at 1248.423 kb on + strand, within SM_b20846 at 1248.423 kb on + strand, within SM_b20846 at 1248.423 kb on + strand, within SM_b20846 at 1248.423 kb on + strand, within SM_b20846 at 1248.423 kb on + strand, within SM_b20846 at 1248.424 kb on - strand, within SM_b20846 at 1248.424 kb on - strand, within SM_b20846 at 1248.424 kb on - strand, within SM_b20846 at 1248.424 kb on - strand, within SM_b20846 at 1248.424 kb on - strand, within SM_b20846 at 1248.426 kb on - strand, within SM_b20846 at 1248.477 kb on + strand, within SM_b20846 at 1248.478 kb on - strand, within SM_b20846 at 1248.480 kb on + strand, within SM_b20846 at 1248.481 kb on - strand, within SM_b20846 at 1248.522 kb on - strand, within SM_b20846 at 1248.537 kb on + strand, within SM_b20846 at 1248.538 kb on - strand, within SM_b20846 at 1248.538 kb on - strand, within SM_b20846 at 1248.706 kb on - strand, within SM_b20846 at 1248.706 kb on - strand, within SM_b20846 at 1248.713 kb on - strand, within SM_b20846 at 1248.947 kb on + strand at 1248.948 kb on - strand at 1248.948 kb on - strand at 1249.185 kb on - strand at 1249.228 kb on - strand at 1249.322 kb on + strand, within SM_b21676 at 1249.337 kb on + strand, within SM_b21676 at 1249.337 kb on + strand, within SM_b21676 at 1249.405 kb on + strand, within SM_b21676 at 1249.406 kb on - strand, within SM_b21676 at 1249.408 kb on - strand, within SM_b21676 at 1249.408 kb on - strand, within SM_b21676 at 1249.408 kb on - strand, within SM_b21676 at 1249.478 kb on - strand, within SM_b21676 at 1249.510 kb on + strand at 1249.649 kb on + strand, within SM_b20847 at 1249.650 kb on - strand, within SM_b20847 at 1249.944 kb on + strand, within SM_b20847 at 1249.944 kb on + strand, within SM_b20847 at 1249.944 kb on + strand, within SM_b20847 at 1249.944 kb on + strand, within SM_b20847 at 1249.945 kb on - strand, within SM_b20847 at 1249.945 kb on - strand, within SM_b20847 at 1250.020 kb on - strand, within SM_b20847 at 1250.026 kb on + strand, within SM_b20847 at 1250.294 kb on + strand, within SM_b20847 at 1250.295 kb on - strand, within SM_b20847 at 1250.295 kb on - strand, within SM_b20847 at 1250.295 kb on - strand, within SM_b20847 at 1250.333 kb on + strand, within SM_b20847 at 1250.346 kb on - strand at 1250.437 kb on + strand at 1250.438 kb on - strand at 1250.438 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 1,248,387 + SM_b20846 0.75 -1.9 1,248,388 - SM_b20846 0.76 -1.2 1,248,423 + SM_b20846 0.77 +0.1 1,248,423 + SM_b20846 0.77 -1.7 1,248,423 + SM_b20846 0.77 +0.3 1,248,423 + SM_b20846 0.77 -0.4 1,248,423 + SM_b20846 0.77 +1.0 1,248,424 - SM_b20846 0.77 +0.6 1,248,424 - SM_b20846 0.77 +0.4 1,248,424 - SM_b20846 0.77 +0.9 1,248,424 - SM_b20846 0.77 +1.4 1,248,424 - SM_b20846 0.77 -0.5 1,248,426 - SM_b20846 0.77 -1.5 1,248,477 + SM_b20846 0.79 +1.0 1,248,478 - SM_b20846 0.79 -0.8 1,248,480 + SM_b20846 0.79 -0.1 1,248,481 - SM_b20846 0.80 +0.3 1,248,522 - SM_b20846 0.81 +0.9 1,248,537 + SM_b20846 0.82 +2.8 1,248,538 - SM_b20846 0.82 +0.1 1,248,538 - SM_b20846 0.82 -1.0 1,248,706 - SM_b20846 0.89 -3.9 1,248,706 - SM_b20846 0.89 -0.2 1,248,713 - SM_b20846 0.89 -0.4 1,248,947 + +3.0 1,248,948 - +0.1 1,248,948 - +5.4 1,249,185 - +0.4 1,249,228 - +0.2 1,249,322 + SM_b21676 0.33 +0.2 1,249,337 + SM_b21676 0.38 -0.8 1,249,337 + SM_b21676 0.38 +2.4 1,249,405 + SM_b21676 0.61 -0.8 1,249,406 - SM_b21676 0.61 +2.1 1,249,408 - SM_b21676 0.62 +0.5 1,249,408 - SM_b21676 0.62 -1.8 1,249,408 - SM_b21676 0.62 -1.8 1,249,478 - SM_b21676 0.86 +0.8 1,249,510 + +0.4 1,249,649 + SM_b20847 0.13 +0.4 1,249,650 - SM_b20847 0.13 -1.1 1,249,944 + SM_b20847 0.46 +0.7 1,249,944 + SM_b20847 0.46 +1.0 1,249,944 + SM_b20847 0.46 +1.3 1,249,944 + SM_b20847 0.46 +0.5 1,249,945 - SM_b20847 0.46 +1.0 1,249,945 - SM_b20847 0.46 +0.3 1,250,020 - SM_b20847 0.54 +0.8 1,250,026 + SM_b20847 0.55 +0.7 1,250,294 + SM_b20847 0.85 +0.4 1,250,295 - SM_b20847 0.85 +0.3 1,250,295 - SM_b20847 0.85 +0.8 1,250,295 - SM_b20847 0.85 -0.2 1,250,333 + SM_b20847 0.89 -2.3 1,250,346 - +1.5 1,250,437 + -0.3 1,250,438 - +1.4 1,250,438 - -0.9
Or see this region's nucleotide sequence