Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21551

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21550 and SM_b21551 are separated by 24 nucleotidesSM_b21551 and SM_b21552 are separated by 168 nucleotidesSM_b21552 and SM_b21554 are separated by 202 nucleotides SM_b21550: SM_b21550 - hypothetical protein, at 1,089,132 to 1,090,373 _b21550 SM_b21551: SM_b21551 - hypothetical protein, at 1,090,398 to 1,091,324 _b21551 SM_b21552: SM_b21552 - aminoglycoside 6'-N-acetyltransferase, amikacin resistance protein, at 1,091,493 to 1,091,996 _b21552 SM_b21554: SM_b21554 - hypothetical protein, at 1,092,199 to 1,092,741 _b21554 Position (kb) 1090 1091 1092Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1089.620 kb on - strand, within SM_b21550at 1089.627 kb on - strand, within SM_b21550at 1089.861 kb on + strand, within SM_b21550at 1089.861 kb on + strand, within SM_b21550at 1090.210 kb on - strand, within SM_b21550at 1090.210 kb on - strand, within SM_b21550at 1090.210 kb on - strand, within SM_b21550at 1090.238 kb on + strand, within SM_b21550at 1090.240 kb on + strand, within SM_b21550at 1090.240 kb on + strand, within SM_b21550at 1090.241 kb on - strand, within SM_b21550at 1090.241 kb on - strand, within SM_b21550at 1090.241 kb on - strand, within SM_b21550at 1090.241 kb on - strand, within SM_b21550at 1090.601 kb on - strand, within SM_b21551at 1091.322 kb on + strandat 1091.323 kb on - strandat 1091.328 kb on - strandat 1091.333 kb on + strandat 1091.333 kb on + strandat 1091.484 kb on + strandat 1091.485 kb on - strandat 1091.552 kb on + strand, within SM_b21552at 1091.552 kb on + strand, within SM_b21552at 1091.561 kb on + strand, within SM_b21552at 1091.561 kb on + strand, within SM_b21552at 1091.561 kb on + strand, within SM_b21552at 1091.575 kb on - strand, within SM_b21552at 1091.616 kb on + strand, within SM_b21552at 1091.659 kb on + strand, within SM_b21552at 1091.659 kb on + strand, within SM_b21552at 1091.659 kb on + strand, within SM_b21552at 1091.667 kb on + strand, within SM_b21552at 1091.669 kb on + strand, within SM_b21552at 1091.670 kb on - strand, within SM_b21552at 1091.670 kb on - strand, within SM_b21552at 1091.715 kb on + strand, within SM_b21552at 1091.715 kb on + strand, within SM_b21552at 1091.737 kb on + strand, within SM_b21552at 1091.737 kb on + strand, within SM_b21552at 1091.738 kb on - strand, within SM_b21552at 1091.767 kb on + strand, within SM_b21552at 1091.767 kb on + strand, within SM_b21552at 1091.768 kb on - strand, within SM_b21552at 1091.768 kb on - strand, within SM_b21552at 1091.768 kb on - strand, within SM_b21552at 1091.768 kb on - strand, within SM_b21552at 1091.771 kb on + strand, within SM_b21552at 1091.813 kb on + strand, within SM_b21552at 1091.813 kb on + strand, within SM_b21552at 1091.813 kb on + strand, within SM_b21552at 1091.826 kb on + strand, within SM_b21552at 1091.826 kb on + strand, within SM_b21552at 1091.826 kb on + strand, within SM_b21552at 1091.826 kb on + strand, within SM_b21552at 1091.826 kb on + strand, within SM_b21552at 1091.827 kb on - strand, within SM_b21552at 1091.827 kb on - strandat 1091.827 kb on - strand, within SM_b21552at 1091.827 kb on - strand, within SM_b21552at 1091.882 kb on + strand, within SM_b21552at 1091.896 kb on + strand, within SM_b21552at 1091.897 kb on - strandat 1091.900 kb on + strand, within SM_b21552at 1091.971 kb on + strandat 1091.972 kb on - strandat 1091.972 kb on - strandat 1091.972 kb on - strandat 1091.994 kb on + strandat 1091.995 kb on - strandat 1092.010 kb on + strandat 1092.010 kb on + strandat 1092.109 kb on + strandat 1092.152 kb on + strandat 1092.153 kb on - strandat 1092.218 kb on + strandat 1092.219 kb on - strandat 1092.251 kb on + strandat 1092.251 kb on + strandat 1092.252 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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1,089,620 - SM_b21550 0.39 +1.3
1,089,627 - SM_b21550 0.40 +1.1
1,089,861 + SM_b21550 0.59 +0.0
1,089,861 + SM_b21550 0.59 -1.0
1,090,210 - SM_b21550 0.87 +0.6
1,090,210 - SM_b21550 0.87 +0.1
1,090,210 - SM_b21550 0.87 -0.6
1,090,238 + SM_b21550 0.89 +0.3
1,090,240 + SM_b21550 0.89 +0.4
1,090,240 + SM_b21550 0.89 +3.1
1,090,241 - SM_b21550 0.89 -0.0
1,090,241 - SM_b21550 0.89 -2.1
1,090,241 - SM_b21550 0.89 -1.6
1,090,241 - SM_b21550 0.89 -0.3
1,090,601 - SM_b21551 0.22 -1.1
1,091,322 + +3.5
1,091,323 - -0.2
1,091,328 - -3.3
1,091,333 + -1.9
1,091,333 + -2.7
1,091,484 + +0.2
1,091,485 - -2.0
1,091,552 + SM_b21552 0.12 +0.8
1,091,552 + SM_b21552 0.12 +1.2
1,091,561 + SM_b21552 0.13 +1.8
1,091,561 + SM_b21552 0.13 -1.4
1,091,561 + SM_b21552 0.13 +1.1
1,091,575 - SM_b21552 0.16 -0.9
1,091,616 + SM_b21552 0.24 -1.0
1,091,659 + SM_b21552 0.33 +1.3
1,091,659 + SM_b21552 0.33 +0.4
1,091,659 + SM_b21552 0.33 -0.7
1,091,667 + SM_b21552 0.35 +0.7
1,091,669 + SM_b21552 0.35 +0.8
1,091,670 - SM_b21552 0.35 +0.0
1,091,670 - SM_b21552 0.35 +0.7
1,091,715 + SM_b21552 0.44 -0.4
1,091,715 + SM_b21552 0.44 -1.3
1,091,737 + SM_b21552 0.48 -0.6
1,091,737 + SM_b21552 0.48 -1.5
1,091,738 - SM_b21552 0.49 -1.7
1,091,767 + SM_b21552 0.54 +2.5
1,091,767 + SM_b21552 0.54 +1.5
1,091,768 - SM_b21552 0.55 +0.2
1,091,768 - SM_b21552 0.55 +1.3
1,091,768 - SM_b21552 0.55 +0.5
1,091,768 - SM_b21552 0.55 +0.3
1,091,771 + SM_b21552 0.55 +1.5
1,091,813 + SM_b21552 0.63 -0.0
1,091,813 + SM_b21552 0.63 +0.2
1,091,813 + SM_b21552 0.63 +0.3
1,091,826 + SM_b21552 0.66 +0.1
1,091,826 + SM_b21552 0.66 +0.7
1,091,826 + SM_b21552 0.66 +0.1
1,091,826 + SM_b21552 0.66 +0.8
1,091,826 + SM_b21552 0.66 +0.0
1,091,827 - SM_b21552 0.66 -2.3
1,091,827 - -0.5
1,091,827 - SM_b21552 0.66 -1.7
1,091,827 - SM_b21552 0.66 +0.6
1,091,882 + SM_b21552 0.77 -1.2
1,091,896 + SM_b21552 0.80 +0.5
1,091,897 - +1.5
1,091,900 + SM_b21552 0.81 -2.2
1,091,971 + -1.4
1,091,972 - +0.5
1,091,972 - +1.4
1,091,972 - +0.6
1,091,994 + -0.3
1,091,995 - -1.3
1,092,010 + -1.3
1,092,010 + +0.0
1,092,109 + -0.9
1,092,152 + -0.2
1,092,153 - -1.5
1,092,218 + -2.6
1,092,219 - -0.3
1,092,251 + -1.1
1,092,251 + +1.1
1,092,252 - +0.4

Or see this region's nucleotide sequence