Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21550 and SM_b21551 are separated by 24 nucleotides SM_b21551 and SM_b21552 are separated by 168 nucleotides SM_b21552 and SM_b21554 are separated by 202 nucleotides
SM_b21550: SM_b21550 - hypothetical protein, at 1,089,132 to 1,090,373
_b21550
SM_b21551: SM_b21551 - hypothetical protein, at 1,090,398 to 1,091,324
_b21551
SM_b21552: SM_b21552 - aminoglycoside 6'-N-acetyltransferase, amikacin resistance protein, at 1,091,493 to 1,091,996
_b21552
SM_b21554: SM_b21554 - hypothetical protein, at 1,092,199 to 1,092,741
_b21554
Position (kb)
1090
1091
1092 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1089.620 kb on - strand, within SM_b21550 at 1089.627 kb on - strand, within SM_b21550 at 1089.861 kb on + strand, within SM_b21550 at 1089.861 kb on + strand, within SM_b21550 at 1090.210 kb on - strand, within SM_b21550 at 1090.210 kb on - strand, within SM_b21550 at 1090.210 kb on - strand, within SM_b21550 at 1090.238 kb on + strand, within SM_b21550 at 1090.240 kb on + strand, within SM_b21550 at 1090.240 kb on + strand, within SM_b21550 at 1090.241 kb on - strand, within SM_b21550 at 1090.241 kb on - strand, within SM_b21550 at 1090.241 kb on - strand, within SM_b21550 at 1090.241 kb on - strand, within SM_b21550 at 1090.601 kb on - strand, within SM_b21551 at 1091.322 kb on + strand at 1091.323 kb on - strand at 1091.328 kb on - strand at 1091.333 kb on + strand at 1091.333 kb on + strand at 1091.484 kb on + strand at 1091.485 kb on - strand at 1091.552 kb on + strand, within SM_b21552 at 1091.552 kb on + strand, within SM_b21552 at 1091.561 kb on + strand, within SM_b21552 at 1091.561 kb on + strand, within SM_b21552 at 1091.561 kb on + strand, within SM_b21552 at 1091.575 kb on - strand, within SM_b21552 at 1091.616 kb on + strand, within SM_b21552 at 1091.659 kb on + strand, within SM_b21552 at 1091.659 kb on + strand, within SM_b21552 at 1091.659 kb on + strand, within SM_b21552 at 1091.667 kb on + strand, within SM_b21552 at 1091.669 kb on + strand, within SM_b21552 at 1091.670 kb on - strand, within SM_b21552 at 1091.670 kb on - strand, within SM_b21552 at 1091.715 kb on + strand, within SM_b21552 at 1091.715 kb on + strand, within SM_b21552 at 1091.737 kb on + strand, within SM_b21552 at 1091.737 kb on + strand, within SM_b21552 at 1091.738 kb on - strand, within SM_b21552 at 1091.767 kb on + strand, within SM_b21552 at 1091.767 kb on + strand, within SM_b21552 at 1091.768 kb on - strand, within SM_b21552 at 1091.768 kb on - strand, within SM_b21552 at 1091.768 kb on - strand, within SM_b21552 at 1091.768 kb on - strand, within SM_b21552 at 1091.771 kb on + strand, within SM_b21552 at 1091.813 kb on + strand, within SM_b21552 at 1091.813 kb on + strand, within SM_b21552 at 1091.813 kb on + strand, within SM_b21552 at 1091.826 kb on + strand, within SM_b21552 at 1091.826 kb on + strand, within SM_b21552 at 1091.826 kb on + strand, within SM_b21552 at 1091.826 kb on + strand, within SM_b21552 at 1091.826 kb on + strand, within SM_b21552 at 1091.827 kb on - strand, within SM_b21552 at 1091.827 kb on - strand at 1091.827 kb on - strand, within SM_b21552 at 1091.827 kb on - strand, within SM_b21552 at 1091.882 kb on + strand, within SM_b21552 at 1091.896 kb on + strand, within SM_b21552 at 1091.897 kb on - strand at 1091.900 kb on + strand, within SM_b21552 at 1091.971 kb on + strand at 1091.972 kb on - strand at 1091.972 kb on - strand at 1091.972 kb on - strand at 1091.994 kb on + strand at 1091.995 kb on - strand at 1092.010 kb on + strand at 1092.010 kb on + strand at 1092.109 kb on + strand at 1092.152 kb on + strand at 1092.153 kb on - strand at 1092.218 kb on + strand at 1092.219 kb on - strand at 1092.251 kb on + strand at 1092.251 kb on + strand at 1092.252 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 1,089,620 - SM_b21550 0.39 +1.3 1,089,627 - SM_b21550 0.40 +1.1 1,089,861 + SM_b21550 0.59 +0.0 1,089,861 + SM_b21550 0.59 -1.0 1,090,210 - SM_b21550 0.87 +0.6 1,090,210 - SM_b21550 0.87 +0.1 1,090,210 - SM_b21550 0.87 -0.6 1,090,238 + SM_b21550 0.89 +0.3 1,090,240 + SM_b21550 0.89 +0.4 1,090,240 + SM_b21550 0.89 +3.1 1,090,241 - SM_b21550 0.89 -0.0 1,090,241 - SM_b21550 0.89 -2.1 1,090,241 - SM_b21550 0.89 -1.6 1,090,241 - SM_b21550 0.89 -0.3 1,090,601 - SM_b21551 0.22 -1.1 1,091,322 + +3.5 1,091,323 - -0.2 1,091,328 - -3.3 1,091,333 + -1.9 1,091,333 + -2.7 1,091,484 + +0.2 1,091,485 - -2.0 1,091,552 + SM_b21552 0.12 +0.8 1,091,552 + SM_b21552 0.12 +1.2 1,091,561 + SM_b21552 0.13 +1.8 1,091,561 + SM_b21552 0.13 -1.4 1,091,561 + SM_b21552 0.13 +1.1 1,091,575 - SM_b21552 0.16 -0.9 1,091,616 + SM_b21552 0.24 -1.0 1,091,659 + SM_b21552 0.33 +1.3 1,091,659 + SM_b21552 0.33 +0.4 1,091,659 + SM_b21552 0.33 -0.7 1,091,667 + SM_b21552 0.35 +0.7 1,091,669 + SM_b21552 0.35 +0.8 1,091,670 - SM_b21552 0.35 +0.0 1,091,670 - SM_b21552 0.35 +0.7 1,091,715 + SM_b21552 0.44 -0.4 1,091,715 + SM_b21552 0.44 -1.3 1,091,737 + SM_b21552 0.48 -0.6 1,091,737 + SM_b21552 0.48 -1.5 1,091,738 - SM_b21552 0.49 -1.7 1,091,767 + SM_b21552 0.54 +2.5 1,091,767 + SM_b21552 0.54 +1.5 1,091,768 - SM_b21552 0.55 +0.2 1,091,768 - SM_b21552 0.55 +1.3 1,091,768 - SM_b21552 0.55 +0.5 1,091,768 - SM_b21552 0.55 +0.3 1,091,771 + SM_b21552 0.55 +1.5 1,091,813 + SM_b21552 0.63 -0.0 1,091,813 + SM_b21552 0.63 +0.2 1,091,813 + SM_b21552 0.63 +0.3 1,091,826 + SM_b21552 0.66 +0.1 1,091,826 + SM_b21552 0.66 +0.7 1,091,826 + SM_b21552 0.66 +0.1 1,091,826 + SM_b21552 0.66 +0.8 1,091,826 + SM_b21552 0.66 +0.0 1,091,827 - SM_b21552 0.66 -2.3 1,091,827 - -0.5 1,091,827 - SM_b21552 0.66 -1.7 1,091,827 - SM_b21552 0.66 +0.6 1,091,882 + SM_b21552 0.77 -1.2 1,091,896 + SM_b21552 0.80 +0.5 1,091,897 - +1.5 1,091,900 + SM_b21552 0.81 -2.2 1,091,971 + -1.4 1,091,972 - +0.5 1,091,972 - +1.4 1,091,972 - +0.6 1,091,994 + -0.3 1,091,995 - -1.3 1,092,010 + -1.3 1,092,010 + +0.0 1,092,109 + -0.9 1,092,152 + -0.2 1,092,153 - -1.5 1,092,218 + -2.6 1,092,219 - -0.3 1,092,251 + -1.1 1,092,251 + +1.1 1,092,252 - +0.4
Or see this region's nucleotide sequence