Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21435

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21685 and SM_b21434 are separated by 9 nucleotidesSM_b21434 and SM_b21435 are separated by 55 nucleotidesSM_b21435 and SM_b21436 are separated by 36 nucleotides SM_b21685: SM_b21685 - hypothetical protein, at 1,363,965 to 1,364,120 _b21685 SM_b21434: SM_b21434 - LysR family transcriptional regulator, at 1,364,130 to 1,365,050 _b21434 SM_b21435: SM_b21435 - allantoate amidohydrolase, at 1,365,106 to 1,366,350 _b21435 SM_b21436: SM_b21436 - C4-dicarboxylate transport system, permease large protein transmembrane, at 1,366,387 to 1,367,667 _b21436 Position (kb) 1365 1366 1367Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1364.119 kb on - strandat 1364.335 kb on - strand, within SM_b21434at 1364.335 kb on - strand, within SM_b21434at 1364.373 kb on - strand, within SM_b21434at 1364.478 kb on + strand, within SM_b21434at 1364.501 kb on - strand, within SM_b21434at 1364.575 kb on + strand, within SM_b21434at 1364.575 kb on + strand, within SM_b21434at 1364.575 kb on + strand, within SM_b21434at 1364.575 kb on + strand, within SM_b21434at 1364.576 kb on - strand, within SM_b21434at 1364.576 kb on - strand, within SM_b21434at 1364.576 kb on - strand, within SM_b21434at 1364.576 kb on - strand, within SM_b21434at 1364.576 kb on - strand, within SM_b21434at 1364.576 kb on - strand, within SM_b21434at 1364.644 kb on - strand, within SM_b21434at 1364.644 kb on - strand, within SM_b21434at 1364.644 kb on - strand, within SM_b21434at 1364.676 kb on - strand, within SM_b21434at 1364.827 kb on + strand, within SM_b21434at 1364.827 kb on + strand, within SM_b21434at 1364.827 kb on + strand, within SM_b21434at 1364.828 kb on - strand, within SM_b21434at 1365.257 kb on + strand, within SM_b21435at 1365.257 kb on + strand, within SM_b21435at 1365.299 kb on + strand, within SM_b21435at 1365.382 kb on + strand, within SM_b21435at 1365.382 kb on + strand, within SM_b21435at 1365.663 kb on + strand, within SM_b21435at 1365.663 kb on + strand, within SM_b21435at 1365.663 kb on + strand, within SM_b21435at 1365.663 kb on + strand, within SM_b21435at 1365.664 kb on - strand, within SM_b21435at 1365.701 kb on + strand, within SM_b21435at 1365.701 kb on + strand, within SM_b21435at 1365.903 kb on - strand, within SM_b21435at 1366.020 kb on + strand, within SM_b21435at 1366.478 kb on + strandat 1366.479 kb on - strandat 1366.551 kb on + strand, within SM_b21436at 1366.552 kb on - strand, within SM_b21436at 1366.552 kb on - strand, within SM_b21436at 1366.896 kb on - strand, within SM_b21436at 1366.896 kb on - strand, within SM_b21436at 1366.896 kb on - strand, within SM_b21436at 1366.922 kb on + strand, within SM_b21436at 1366.922 kb on + strand, within SM_b21436at 1367.200 kb on + strand, within SM_b21436at 1367.200 kb on + strand, within SM_b21436at 1367.201 kb on - strand, within SM_b21436at 1367.201 kb on - strand, within SM_b21436

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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1,364,119 - -1.4
1,364,335 - SM_b21434 0.22 -0.4
1,364,335 - SM_b21434 0.22 +0.2
1,364,373 - SM_b21434 0.26 +1.7
1,364,478 + SM_b21434 0.38 -0.5
1,364,501 - SM_b21434 0.40 -1.2
1,364,575 + SM_b21434 0.48 +0.1
1,364,575 + SM_b21434 0.48 -0.3
1,364,575 + SM_b21434 0.48 +0.6
1,364,575 + SM_b21434 0.48 -1.3
1,364,576 - SM_b21434 0.48 -0.9
1,364,576 - SM_b21434 0.48 -1.4
1,364,576 - SM_b21434 0.48 +0.2
1,364,576 - SM_b21434 0.48 +0.3
1,364,576 - SM_b21434 0.48 -0.2
1,364,576 - SM_b21434 0.48 -0.4
1,364,644 - SM_b21434 0.56 -1.8
1,364,644 - SM_b21434 0.56 -1.3
1,364,644 - SM_b21434 0.56 -0.4
1,364,676 - SM_b21434 0.59 +0.2
1,364,827 + SM_b21434 0.76 +0.4
1,364,827 + SM_b21434 0.76 +0.8
1,364,827 + SM_b21434 0.76 +0.8
1,364,828 - SM_b21434 0.76 +0.2
1,365,257 + SM_b21435 0.12 -0.8
1,365,257 + SM_b21435 0.12 +3.0
1,365,299 + SM_b21435 0.16 -0.3
1,365,382 + SM_b21435 0.22 -4.7
1,365,382 + SM_b21435 0.22 -3.0
1,365,663 + SM_b21435 0.45 +0.2
1,365,663 + SM_b21435 0.45 +0.1
1,365,663 + SM_b21435 0.45 +0.6
1,365,663 + SM_b21435 0.45 -0.2
1,365,664 - SM_b21435 0.45 +0.7
1,365,701 + SM_b21435 0.48 -1.0
1,365,701 + SM_b21435 0.48 -1.1
1,365,903 - SM_b21435 0.64 -0.4
1,366,020 + SM_b21435 0.73 +0.5
1,366,478 + +0.5
1,366,479 - -3.0
1,366,551 + SM_b21436 0.13 +0.5
1,366,552 - SM_b21436 0.13 +0.6
1,366,552 - SM_b21436 0.13 +0.3
1,366,896 - SM_b21436 0.40 +0.1
1,366,896 - SM_b21436 0.40 +1.0
1,366,896 - SM_b21436 0.40 -0.2
1,366,922 + SM_b21436 0.42 +1.9
1,366,922 + SM_b21436 0.42 -0.5
1,367,200 + SM_b21436 0.63 +1.0
1,367,200 + SM_b21436 0.63 +1.4
1,367,201 - SM_b21436 0.64 -2.4
1,367,201 - SM_b21436 0.64 -1.8

Or see this region's nucleotide sequence