Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21685 and SM_b21434 are separated by 9 nucleotides SM_b21434 and SM_b21435 are separated by 55 nucleotides SM_b21435 and SM_b21436 are separated by 36 nucleotides
SM_b21685: SM_b21685 - hypothetical protein, at 1,363,965 to 1,364,120
_b21685
SM_b21434: SM_b21434 - LysR family transcriptional regulator, at 1,364,130 to 1,365,050
_b21434
SM_b21435: SM_b21435 - allantoate amidohydrolase, at 1,365,106 to 1,366,350
_b21435
SM_b21436: SM_b21436 - C4-dicarboxylate transport system, permease large protein transmembrane, at 1,366,387 to 1,367,667
_b21436
Position (kb)
1365
1366
1367 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1364.119 kb on - strand at 1364.335 kb on - strand, within SM_b21434 at 1364.335 kb on - strand, within SM_b21434 at 1364.373 kb on - strand, within SM_b21434 at 1364.478 kb on + strand, within SM_b21434 at 1364.501 kb on - strand, within SM_b21434 at 1364.575 kb on + strand, within SM_b21434 at 1364.575 kb on + strand, within SM_b21434 at 1364.575 kb on + strand, within SM_b21434 at 1364.575 kb on + strand, within SM_b21434 at 1364.576 kb on - strand, within SM_b21434 at 1364.576 kb on - strand, within SM_b21434 at 1364.576 kb on - strand, within SM_b21434 at 1364.576 kb on - strand, within SM_b21434 at 1364.576 kb on - strand, within SM_b21434 at 1364.576 kb on - strand, within SM_b21434 at 1364.644 kb on - strand, within SM_b21434 at 1364.644 kb on - strand, within SM_b21434 at 1364.644 kb on - strand, within SM_b21434 at 1364.676 kb on - strand, within SM_b21434 at 1364.827 kb on + strand, within SM_b21434 at 1364.827 kb on + strand, within SM_b21434 at 1364.827 kb on + strand, within SM_b21434 at 1364.828 kb on - strand, within SM_b21434 at 1365.257 kb on + strand, within SM_b21435 at 1365.257 kb on + strand, within SM_b21435 at 1365.299 kb on + strand, within SM_b21435 at 1365.382 kb on + strand, within SM_b21435 at 1365.382 kb on + strand, within SM_b21435 at 1365.663 kb on + strand, within SM_b21435 at 1365.663 kb on + strand, within SM_b21435 at 1365.663 kb on + strand, within SM_b21435 at 1365.663 kb on + strand, within SM_b21435 at 1365.664 kb on - strand, within SM_b21435 at 1365.701 kb on + strand, within SM_b21435 at 1365.701 kb on + strand, within SM_b21435 at 1365.903 kb on - strand, within SM_b21435 at 1366.020 kb on + strand, within SM_b21435 at 1366.478 kb on + strand at 1366.479 kb on - strand at 1366.551 kb on + strand, within SM_b21436 at 1366.552 kb on - strand, within SM_b21436 at 1366.552 kb on - strand, within SM_b21436 at 1366.896 kb on - strand, within SM_b21436 at 1366.896 kb on - strand, within SM_b21436 at 1366.896 kb on - strand, within SM_b21436 at 1366.922 kb on + strand, within SM_b21436 at 1366.922 kb on + strand, within SM_b21436 at 1367.200 kb on + strand, within SM_b21436 at 1367.200 kb on + strand, within SM_b21436 at 1367.201 kb on - strand, within SM_b21436 at 1367.201 kb on - strand, within SM_b21436
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 1,364,119 - -1.4 1,364,335 - SM_b21434 0.22 -0.4 1,364,335 - SM_b21434 0.22 +0.2 1,364,373 - SM_b21434 0.26 +1.7 1,364,478 + SM_b21434 0.38 -0.5 1,364,501 - SM_b21434 0.40 -1.2 1,364,575 + SM_b21434 0.48 +0.1 1,364,575 + SM_b21434 0.48 -0.3 1,364,575 + SM_b21434 0.48 +0.6 1,364,575 + SM_b21434 0.48 -1.3 1,364,576 - SM_b21434 0.48 -0.9 1,364,576 - SM_b21434 0.48 -1.4 1,364,576 - SM_b21434 0.48 +0.2 1,364,576 - SM_b21434 0.48 +0.3 1,364,576 - SM_b21434 0.48 -0.2 1,364,576 - SM_b21434 0.48 -0.4 1,364,644 - SM_b21434 0.56 -1.8 1,364,644 - SM_b21434 0.56 -1.3 1,364,644 - SM_b21434 0.56 -0.4 1,364,676 - SM_b21434 0.59 +0.2 1,364,827 + SM_b21434 0.76 +0.4 1,364,827 + SM_b21434 0.76 +0.8 1,364,827 + SM_b21434 0.76 +0.8 1,364,828 - SM_b21434 0.76 +0.2 1,365,257 + SM_b21435 0.12 -0.8 1,365,257 + SM_b21435 0.12 +3.0 1,365,299 + SM_b21435 0.16 -0.3 1,365,382 + SM_b21435 0.22 -4.7 1,365,382 + SM_b21435 0.22 -3.0 1,365,663 + SM_b21435 0.45 +0.2 1,365,663 + SM_b21435 0.45 +0.1 1,365,663 + SM_b21435 0.45 +0.6 1,365,663 + SM_b21435 0.45 -0.2 1,365,664 - SM_b21435 0.45 +0.7 1,365,701 + SM_b21435 0.48 -1.0 1,365,701 + SM_b21435 0.48 -1.1 1,365,903 - SM_b21435 0.64 -0.4 1,366,020 + SM_b21435 0.73 +0.5 1,366,478 + +0.5 1,366,479 - -3.0 1,366,551 + SM_b21436 0.13 +0.5 1,366,552 - SM_b21436 0.13 +0.6 1,366,552 - SM_b21436 0.13 +0.3 1,366,896 - SM_b21436 0.40 +0.1 1,366,896 - SM_b21436 0.40 +1.0 1,366,896 - SM_b21436 0.40 -0.2 1,366,922 + SM_b21436 0.42 +1.9 1,366,922 + SM_b21436 0.42 -0.5 1,367,200 + SM_b21436 0.63 +1.0 1,367,200 + SM_b21436 0.63 +1.4 1,367,201 - SM_b21436 0.64 -2.4 1,367,201 - SM_b21436 0.64 -1.8
Or see this region's nucleotide sequence