Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21414

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21412 and SM_b21413 are separated by 19 nucleotidesSM_b21413 and SM_b21414 are separated by 73 nucleotidesSM_b21414 and SM_b21415 are separated by 42 nucleotides SM_b21412: SM_b21412 - hypothetical protein, at 1,341,717 to 1,342,142 _b21412 SM_b21413: SM_b21413 - hypothetical protein, at 1,342,162 to 1,342,728 _b21413 SM_b21414: SM_b21414 - amino acid decarboxylase, at 1,342,802 to 1,344,223 _b21414 SM_b21415: SM_b21415 - oxidoreductase, oxygen dependent, FAD-dependent protein, at 1,344,266 to 1,345,705 _b21415 Position (kb) 1342 1343 1344 1345Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1342.002 kb on + strand, within SM_b21412at 1342.164 kb on - strandat 1342.183 kb on + strandat 1342.183 kb on + strandat 1342.183 kb on + strandat 1342.409 kb on - strand, within SM_b21413at 1342.803 kb on + strandat 1343.069 kb on + strand, within SM_b21414at 1343.070 kb on - strand, within SM_b21414at 1343.070 kb on - strand, within SM_b21414at 1343.307 kb on - strand, within SM_b21414at 1343.328 kb on + strand, within SM_b21414at 1343.329 kb on - strand, within SM_b21414at 1343.512 kb on + strand, within SM_b21414at 1343.534 kb on + strandat 1343.535 kb on - strand, within SM_b21414at 1344.120 kb on + strandat 1344.120 kb on + strandat 1344.125 kb on + strandat 1344.125 kb on + strandat 1344.247 kb on - strandat 1344.424 kb on - strand, within SM_b21415at 1344.611 kb on + strand, within SM_b21415at 1344.611 kb on + strand, within SM_b21415at 1344.728 kb on + strand, within SM_b21415at 1344.728 kb on + strand, within SM_b21415at 1344.849 kb on + strand, within SM_b21415at 1344.849 kb on + strand, within SM_b21415at 1344.850 kb on - strand, within SM_b21415at 1344.973 kb on + strand, within SM_b21415at 1344.973 kb on + strand, within SM_b21415at 1344.974 kb on - strand, within SM_b21415at 1344.974 kb on - strandat 1344.976 kb on - strand, within SM_b21415at 1344.976 kb on - strand, within SM_b21415

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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1,342,002 + SM_b21412 0.67 -4.9
1,342,164 - -0.0
1,342,183 + -0.4
1,342,183 + +0.3
1,342,183 + -0.2
1,342,409 - SM_b21413 0.44 -0.5
1,342,803 + -0.5
1,343,069 + SM_b21414 0.19 +0.3
1,343,070 - SM_b21414 0.19 -1.2
1,343,070 - SM_b21414 0.19 -3.7
1,343,307 - SM_b21414 0.36 -1.7
1,343,328 + SM_b21414 0.37 -1.2
1,343,329 - SM_b21414 0.37 -1.0
1,343,512 + SM_b21414 0.50 +1.9
1,343,534 + -0.0
1,343,535 - SM_b21414 0.52 -0.9
1,344,120 + +1.5
1,344,120 + -0.0
1,344,125 + -3.5
1,344,125 + -0.8
1,344,247 - -0.8
1,344,424 - SM_b21415 0.11 -0.0
1,344,611 + SM_b21415 0.24 +0.4
1,344,611 + SM_b21415 0.24 +0.5
1,344,728 + SM_b21415 0.32 +0.8
1,344,728 + SM_b21415 0.32 -0.1
1,344,849 + SM_b21415 0.40 +0.1
1,344,849 + SM_b21415 0.40 +0.4
1,344,850 - SM_b21415 0.41 -2.8
1,344,973 + SM_b21415 0.49 -0.3
1,344,973 + SM_b21415 0.49 +0.3
1,344,974 - SM_b21415 0.49 -0.4
1,344,974 - -0.8
1,344,976 - SM_b21415 0.49 -0.1
1,344,976 - SM_b21415 0.49 -0.4

Or see this region's nucleotide sequence