Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21179 and SM_b21180 are separated by 30 nucleotides SM_b21180 and SM_b21181 are separated by 187 nucleotides
SM_b21179: SM_b21179 - FAD-dependent glycerol-3-phosphate dehydrogenase, at 925,633 to 926,808
_b21179
SM_b21180: SM_b21180 - LysR family transcriptional regulator, at 926,839 to 927,792
_b21180
SM_b21181: SM_b21181 - glutaryl-CoA dehydrogenase, at 927,980 to 929,167
_b21181
Position (kb) 926
927
928 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 925.908 kb on - strand, within SM_b21179 at 926.062 kb on + strand, within SM_b21179 at 926.062 kb on + strand, within SM_b21179 at 926.367 kb on - strand, within SM_b21179 at 926.516 kb on - strand, within SM_b21179 at 926.603 kb on + strand, within SM_b21179 at 926.604 kb on - strand, within SM_b21179 at 926.702 kb on + strand at 926.751 kb on - strand at 926.751 kb on - strand at 926.762 kb on + strand at 926.763 kb on - strand at 926.763 kb on - strand at 926.791 kb on + strand at 927.188 kb on + strand, within SM_b21180 at 927.188 kb on + strand, within SM_b21180 at 927.189 kb on - strand, within SM_b21180 at 927.257 kb on + strand, within SM_b21180 at 927.257 kb on + strand, within SM_b21180 at 927.308 kb on - strand, within SM_b21180 at 927.815 kb on + strand at 927.816 kb on - strand at 927.820 kb on + strand at 927.821 kb on - strand at 927.827 kb on - strand at 927.975 kb on + strand at 927.975 kb on + strand at 927.976 kb on - strand at 927.976 kb on - strand at 927.976 kb on - strand at 928.077 kb on - strand at 928.077 kb on - strand at 928.196 kb on + strand, within SM_b21181 at 928.196 kb on + strand, within SM_b21181 at 928.196 kb on + strand, within SM_b21181 at 928.197 kb on - strand, within SM_b21181 at 928.217 kb on + strand, within SM_b21181 at 928.217 kb on + strand, within SM_b21181 at 928.217 kb on + strand, within SM_b21181 at 928.227 kb on - strand, within SM_b21181 at 928.307 kb on + strand, within SM_b21181 at 928.349 kb on + strand, within SM_b21181 at 928.515 kb on + strand, within SM_b21181 at 928.516 kb on - strand, within SM_b21181 at 928.516 kb on - strand, within SM_b21181 at 928.516 kb on - strand, within SM_b21181 at 928.653 kb on + strand, within SM_b21181
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 925,908 - SM_b21179 0.23 -0.5 926,062 + SM_b21179 0.36 -2.8 926,062 + SM_b21179 0.36 -0.8 926,367 - SM_b21179 0.62 -1.0 926,516 - SM_b21179 0.75 -1.2 926,603 + SM_b21179 0.82 -0.3 926,604 - SM_b21179 0.83 -1.8 926,702 + -0.0 926,751 - -1.8 926,751 - -0.4 926,762 + -1.1 926,763 - -0.1 926,763 - +4.3 926,791 + +0.5 927,188 + SM_b21180 0.37 +0.4 927,188 + SM_b21180 0.37 -2.5 927,189 - SM_b21180 0.37 -1.6 927,257 + SM_b21180 0.44 -1.0 927,257 + SM_b21180 0.44 -0.1 927,308 - SM_b21180 0.49 -0.1 927,815 + +1.3 927,816 - -1.2 927,820 + +0.3 927,821 - -0.2 927,827 - -3.2 927,975 + +0.1 927,975 + +0.4 927,976 - +0.9 927,976 - +0.2 927,976 - -0.8 928,077 - +0.6 928,077 - -1.2 928,196 + SM_b21181 0.18 -0.9 928,196 + SM_b21181 0.18 -0.3 928,196 + SM_b21181 0.18 -0.0 928,197 - SM_b21181 0.18 -1.2 928,217 + SM_b21181 0.20 +2.0 928,217 + SM_b21181 0.20 +0.4 928,217 + SM_b21181 0.20 -1.4 928,227 - SM_b21181 0.21 -0.5 928,307 + SM_b21181 0.28 -1.3 928,349 + SM_b21181 0.31 +1.0 928,515 + SM_b21181 0.45 +0.8 928,516 - SM_b21181 0.45 -3.3 928,516 - SM_b21181 0.45 +2.1 928,516 - SM_b21181 0.45 +1.6 928,653 + SM_b21181 0.57 -1.1
Or see this region's nucleotide sequence