Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21019 and SM_b21021 are separated by 225 nucleotides SM_b21021 and SM_b21022 are separated by 4 nucleotides
SM_b21019: SM_b21019 - sugar ABC transporter ATP-binding protein, at 642,432 to 643,949
_b21019
SM_b21021: SM_b21021 - transcriptional regulator, at 644,175 to 645,122
_b21021
SM_b21022: SM_b21022 - autoinducer-2 (AI-2) kinase, at 645,127 to 646,725
_b21022
Position (kb) 644
645
646 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 643.255 kb on + strand, within SM_b21019 at 643.255 kb on + strand, within SM_b21019 at 643.255 kb on + strand, within SM_b21019 at 643.256 kb on - strand, within SM_b21019 at 643.299 kb on + strand, within SM_b21019 at 643.446 kb on + strand, within SM_b21019 at 643.446 kb on + strand, within SM_b21019 at 643.447 kb on - strand, within SM_b21019 at 643.468 kb on - strand, within SM_b21019 at 643.468 kb on - strand, within SM_b21019 at 643.672 kb on + strand, within SM_b21019 at 643.748 kb on + strand, within SM_b21019 at 643.877 kb on - strand at 644.024 kb on - strand at 644.055 kb on + strand at 644.244 kb on + strand at 644.245 kb on - strand at 644.245 kb on - strand at 644.247 kb on + strand at 644.247 kb on + strand at 644.248 kb on - strand at 644.248 kb on - strand at 644.248 kb on - strand at 644.250 kb on + strand at 644.250 kb on + strand at 644.348 kb on + strand, within SM_b21021 at 644.360 kb on + strand, within SM_b21021 at 644.360 kb on + strand at 644.373 kb on + strand, within SM_b21021 at 644.374 kb on - strand, within SM_b21021 at 644.416 kb on - strand, within SM_b21021 at 644.433 kb on + strand, within SM_b21021 at 644.433 kb on + strand, within SM_b21021 at 644.601 kb on - strand, within SM_b21021 at 644.601 kb on - strand, within SM_b21021 at 644.609 kb on - strand, within SM_b21021 at 644.637 kb on + strand, within SM_b21021 at 644.637 kb on + strand, within SM_b21021 at 644.638 kb on - strand, within SM_b21021 at 644.638 kb on - strand, within SM_b21021 at 644.638 kb on - strand, within SM_b21021 at 644.638 kb on - strand, within SM_b21021 at 644.784 kb on + strand, within SM_b21021 at 644.785 kb on - strand, within SM_b21021 at 644.842 kb on - strand, within SM_b21021 at 645.023 kb on + strand, within SM_b21021 at 645.024 kb on - strand, within SM_b21021 at 645.028 kb on + strand at 645.028 kb on + strand at 645.028 kb on + strand at 645.028 kb on + strand at 645.029 kb on - strand at 645.029 kb on - strand at 645.029 kb on - strand at 645.029 kb on - strand at 645.140 kb on - strand at 645.140 kb on - strand at 645.140 kb on - strand at 645.140 kb on - strand at 645.140 kb on - strand at 645.140 kb on - strand at 645.140 kb on - strand at 645.140 kb on - strand at 645.140 kb on - strand at 645.141 kb on + strand at 645.142 kb on - strand at 645.398 kb on - strand, within SM_b21022 at 645.505 kb on + strand, within SM_b21022 at 645.506 kb on - strand, within SM_b21022 at 645.508 kb on - strand, within SM_b21022 at 645.584 kb on - strand, within SM_b21022 at 645.584 kb on - strand, within SM_b21022 at 645.584 kb on - strand, within SM_b21022 at 645.663 kb on + strand, within SM_b21022 at 645.663 kb on + strand, within SM_b21022 at 645.663 kb on + strand, within SM_b21022 at 645.748 kb on - strand, within SM_b21022 at 645.972 kb on + strand, within SM_b21022 at 645.972 kb on + strand, within SM_b21022 at 646.049 kb on + strand, within SM_b21022 at 646.049 kb on + strand, within SM_b21022 at 646.050 kb on - strand, within SM_b21022 at 646.050 kb on - strand, within SM_b21022 at 646.050 kb on - strand, within SM_b21022 at 646.050 kb on - strand, within SM_b21022 at 646.118 kb on - strand, within SM_b21022 at 646.118 kb on - strand, within SM_b21022
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 643,255 + SM_b21019 0.54 +0.2 643,255 + SM_b21019 0.54 +0.3 643,255 + SM_b21019 0.54 -1.4 643,256 - SM_b21019 0.54 +0.9 643,299 + SM_b21019 0.57 +0.1 643,446 + SM_b21019 0.67 -0.0 643,446 + SM_b21019 0.67 +0.2 643,447 - SM_b21019 0.67 -0.6 643,468 - SM_b21019 0.68 -0.3 643,468 - SM_b21019 0.68 +1.8 643,672 + SM_b21019 0.82 -0.3 643,748 + SM_b21019 0.87 -0.4 643,877 - -2.4 644,024 - +0.2 644,055 + -0.7 644,244 + +0.5 644,245 - +0.3 644,245 - -3.3 644,247 + -0.5 644,247 + -0.3 644,248 - +0.2 644,248 - -0.3 644,248 - -0.1 644,250 + -1.1 644,250 + -0.1 644,348 + SM_b21021 0.18 +1.3 644,360 + SM_b21021 0.20 -2.5 644,360 + +1.5 644,373 + SM_b21021 0.21 -0.3 644,374 - SM_b21021 0.21 -1.5 644,416 - SM_b21021 0.25 +1.7 644,433 + SM_b21021 0.27 -3.0 644,433 + SM_b21021 0.27 -0.6 644,601 - SM_b21021 0.45 -4.1 644,601 - SM_b21021 0.45 +0.2 644,609 - SM_b21021 0.46 +0.5 644,637 + SM_b21021 0.49 -1.6 644,637 + SM_b21021 0.49 +0.9 644,638 - SM_b21021 0.49 -1.4 644,638 - SM_b21021 0.49 -0.0 644,638 - SM_b21021 0.49 -2.2 644,638 - SM_b21021 0.49 +0.3 644,784 + SM_b21021 0.64 -1.5 644,785 - SM_b21021 0.64 -3.0 644,842 - SM_b21021 0.70 +0.7 645,023 + SM_b21021 0.89 -0.1 645,024 - SM_b21021 0.90 -1.6 645,028 + +0.2 645,028 + +0.7 645,028 + -2.0 645,028 + -0.5 645,029 - -0.7 645,029 - -0.2 645,029 - -1.5 645,029 - -3.9 645,140 - +0.5 645,140 - -1.4 645,140 - -0.0 645,140 - -3.4 645,140 - -1.8 645,140 - +0.2 645,140 - -4.2 645,140 - -0.1 645,140 - -1.0 645,141 + -1.7 645,142 - -2.0 645,398 - SM_b21022 0.17 -3.1 645,505 + SM_b21022 0.24 -0.1 645,506 - SM_b21022 0.24 -0.7 645,508 - SM_b21022 0.24 -0.7 645,584 - SM_b21022 0.29 -0.6 645,584 - SM_b21022 0.29 +1.5 645,584 - SM_b21022 0.29 -0.6 645,663 + SM_b21022 0.34 -0.1 645,663 + SM_b21022 0.34 +1.4 645,663 + SM_b21022 0.34 +0.9 645,748 - SM_b21022 0.39 -3.1 645,972 + SM_b21022 0.53 +0.9 645,972 + SM_b21022 0.53 -2.4 646,049 + SM_b21022 0.58 -3.6 646,049 + SM_b21022 0.58 -0.9 646,050 - SM_b21022 0.58 -0.8 646,050 - SM_b21022 0.58 +1.8 646,050 - SM_b21022 0.58 -0.2 646,050 - SM_b21022 0.58 +0.0 646,118 - SM_b21022 0.62 +1.1 646,118 - SM_b21022 0.62 +1.5
Or see this region's nucleotide sequence