Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21013 and SM_b21014 are separated by 205 nucleotides SM_b21014 and SM_b21015 are separated by 372 nucleotides SM_b21015 and SM_b21016 are separated by 64 nucleotides
SM_b21013: SM_b21013 - hypothetical protein, at 636,623 to 637,090
_b21013
SM_b21014: SM_b21014 - hypothetical protein, at 637,296 to 637,676
_b21014
SM_b21015: SM_b21015 - short-chain dehydrogenase, at 638,049 to 639,299
_b21015
SM_b21016: SM_b21016 - sugar ABC transporter substrate-binding protein, at 639,364 to 640,395
_b21016
Position (kb) 638
639
640 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 637.081 kb on + strand at 637.082 kb on - strand at 637.082 kb on - strand at 637.090 kb on + strand at 637.091 kb on - strand at 637.314 kb on + strand at 637.443 kb on + strand, within SM_b21014 at 637.444 kb on - strand, within SM_b21014 at 637.452 kb on + strand, within SM_b21014 at 637.452 kb on + strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.453 kb on - strand, within SM_b21014 at 637.620 kb on + strand, within SM_b21014 at 637.621 kb on - strand, within SM_b21014 at 637.693 kb on + strand at 637.694 kb on - strand at 637.742 kb on - strand at 637.800 kb on - strand at 637.934 kb on + strand at 638.007 kb on + strand at 638.008 kb on - strand at 638.008 kb on - strand at 638.008 kb on - strand at 638.050 kb on + strand at 638.050 kb on + strand at 638.050 kb on + strand at 638.050 kb on + strand at 638.051 kb on - strand at 638.051 kb on - strand at 638.052 kb on + strand at 638.052 kb on + strand at 638.053 kb on - strand at 638.053 kb on - strand at 638.053 kb on - strand at 638.053 kb on - strand at 638.090 kb on - strand at 638.090 kb on - strand at 638.137 kb on + strand at 638.235 kb on - strand, within SM_b21015 at 638.314 kb on + strand, within SM_b21015 at 638.323 kb on + strand, within SM_b21015 at 638.323 kb on + strand, within SM_b21015 at 638.324 kb on - strand, within SM_b21015 at 638.335 kb on + strand, within SM_b21015 at 638.336 kb on - strand, within SM_b21015 at 638.412 kb on + strand, within SM_b21015 at 638.412 kb on + strand, within SM_b21015 at 638.501 kb on - strand, within SM_b21015 at 638.674 kb on + strand, within SM_b21015 at 638.727 kb on + strand, within SM_b21015 at 638.727 kb on + strand, within SM_b21015 at 638.727 kb on + strand, within SM_b21015 at 638.728 kb on - strand, within SM_b21015 at 638.728 kb on - strand, within SM_b21015 at 638.728 kb on - strand, within SM_b21015 at 638.756 kb on - strand, within SM_b21015 at 638.800 kb on + strand, within SM_b21015 at 638.801 kb on - strand, within SM_b21015 at 638.809 kb on + strand, within SM_b21015 at 638.810 kb on - strand, within SM_b21015 at 638.810 kb on - strand, within SM_b21015 at 638.827 kb on + strand, within SM_b21015 at 638.828 kb on - strand, within SM_b21015 at 638.828 kb on - strand, within SM_b21015 at 638.828 kb on - strand, within SM_b21015 at 638.828 kb on - strand, within SM_b21015 at 638.905 kb on + strand, within SM_b21015 at 638.906 kb on - strand, within SM_b21015 at 638.916 kb on + strand, within SM_b21015 at 638.916 kb on + strand, within SM_b21015 at 638.917 kb on - strand, within SM_b21015 at 638.988 kb on + strand, within SM_b21015 at 638.988 kb on + strand, within SM_b21015 at 638.988 kb on + strand, within SM_b21015 at 638.989 kb on - strand, within SM_b21015 at 638.989 kb on - strand, within SM_b21015 at 639.138 kb on + strand, within SM_b21015 at 639.139 kb on - strand, within SM_b21015 at 639.139 kb on - strand, within SM_b21015 at 639.139 kb on - strand, within SM_b21015 at 639.208 kb on + strand at 639.208 kb on + strand at 639.208 kb on + strand at 639.209 kb on - strand at 639.209 kb on - strand at 639.259 kb on - strand at 639.446 kb on + strand at 639.452 kb on + strand at 639.452 kb on + strand at 639.453 kb on - strand at 639.460 kb on + strand at 639.461 kb on - strand at 639.461 kb on - strand at 639.624 kb on + strand, within SM_b21016 at 639.624 kb on + strand, within SM_b21016 at 639.625 kb on - strand, within SM_b21016 at 639.758 kb on + strand, within SM_b21016 at 639.758 kb on + strand, within SM_b21016 at 639.759 kb on - strand, within SM_b21016 at 639.759 kb on - strand, within SM_b21016 at 639.772 kb on - strand, within SM_b21016 at 639.803 kb on + strand, within SM_b21016 at 639.809 kb on + strand, within SM_b21016 at 639.810 kb on - strand, within SM_b21016 at 639.815 kb on + strand, within SM_b21016 at 640.011 kb on - strand, within SM_b21016 at 640.011 kb on - strand, within SM_b21016 at 640.013 kb on + strand, within SM_b21016 at 640.013 kb on + strand, within SM_b21016 at 640.014 kb on - strand, within SM_b21016 at 640.014 kb on - strand, within SM_b21016 at 640.014 kb on - strand, within SM_b21016 at 640.136 kb on + strand, within SM_b21016 at 640.136 kb on + strand, within SM_b21016 at 640.137 kb on - strand, within SM_b21016 at 640.205 kb on + strand, within SM_b21016 at 640.205 kb on + strand, within SM_b21016 at 640.205 kb on + strand, within SM_b21016 at 640.206 kb on - strand, within SM_b21016 at 640.206 kb on - strand, within SM_b21016 at 640.206 kb on - strand, within SM_b21016 at 640.206 kb on - strand, within SM_b21016
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 637,081 + -1.7 637,082 - +0.2 637,082 - +0.4 637,090 + -0.7 637,091 - -1.4 637,314 + -0.5 637,443 + SM_b21014 0.39 +1.5 637,444 - SM_b21014 0.39 -3.3 637,452 + SM_b21014 0.41 +0.6 637,452 + SM_b21014 0.41 +0.8 637,453 - SM_b21014 0.41 -0.1 637,453 - SM_b21014 0.41 -0.8 637,453 - SM_b21014 0.41 -1.5 637,453 - SM_b21014 0.41 -0.4 637,453 - SM_b21014 0.41 +1.5 637,453 - SM_b21014 0.41 -0.3 637,453 - SM_b21014 0.41 -0.6 637,453 - SM_b21014 0.41 +0.2 637,453 - SM_b21014 0.41 +0.3 637,620 + SM_b21014 0.85 +0.4 637,621 - SM_b21014 0.85 -1.5 637,693 + -0.9 637,694 - -0.8 637,742 - -0.8 637,800 - +1.5 637,934 + -0.9 638,007 + -0.8 638,008 - -0.6 638,008 - -0.2 638,008 - -0.1 638,050 + +0.5 638,050 + +3.6 638,050 + +1.7 638,050 + -0.4 638,051 - -1.5 638,051 - -0.1 638,052 + +1.5 638,052 + +0.3 638,053 - +0.1 638,053 - +1.0 638,053 - +0.4 638,053 - +0.1 638,090 - -4.1 638,090 - -0.2 638,137 + +0.1 638,235 - SM_b21015 0.15 +0.3 638,314 + SM_b21015 0.21 +0.8 638,323 + SM_b21015 0.22 -3.0 638,323 + SM_b21015 0.22 +1.0 638,324 - SM_b21015 0.22 -2.0 638,335 + SM_b21015 0.23 -0.7 638,336 - SM_b21015 0.23 -2.0 638,412 + SM_b21015 0.29 -0.8 638,412 + SM_b21015 0.29 -2.3 638,501 - SM_b21015 0.36 -0.9 638,674 + SM_b21015 0.50 +0.2 638,727 + SM_b21015 0.54 -0.7 638,727 + SM_b21015 0.54 -2.1 638,727 + SM_b21015 0.54 -0.9 638,728 - SM_b21015 0.54 -2.8 638,728 - SM_b21015 0.54 -0.9 638,728 - SM_b21015 0.54 +0.6 638,756 - SM_b21015 0.57 +0.2 638,800 + SM_b21015 0.60 -0.3 638,801 - SM_b21015 0.60 -0.1 638,809 + SM_b21015 0.61 -0.8 638,810 - SM_b21015 0.61 -3.3 638,810 - SM_b21015 0.61 +0.3 638,827 + SM_b21015 0.62 -2.2 638,828 - SM_b21015 0.62 +0.6 638,828 - SM_b21015 0.62 -1.1 638,828 - SM_b21015 0.62 -0.0 638,828 - SM_b21015 0.62 -1.5 638,905 + SM_b21015 0.68 +0.0 638,906 - SM_b21015 0.69 -0.3 638,916 + SM_b21015 0.69 +0.9 638,916 + SM_b21015 0.69 -0.2 638,917 - SM_b21015 0.69 +0.5 638,988 + SM_b21015 0.75 +0.8 638,988 + SM_b21015 0.75 -0.2 638,988 + SM_b21015 0.75 +1.1 638,989 - SM_b21015 0.75 -2.3 638,989 - SM_b21015 0.75 -0.6 639,138 + SM_b21015 0.87 +1.5 639,139 - SM_b21015 0.87 +0.9 639,139 - SM_b21015 0.87 -1.1 639,139 - SM_b21015 0.87 -0.9 639,208 + -1.5 639,208 + -2.5 639,208 + -0.4 639,209 - -3.4 639,209 - -0.2 639,259 - -0.5 639,446 + -4.0 639,452 + +0.3 639,452 + +0.1 639,453 - -1.0 639,460 + +0.5 639,461 - -0.2 639,461 - +0.4 639,624 + SM_b21016 0.25 +2.2 639,624 + SM_b21016 0.25 +1.0 639,625 - SM_b21016 0.25 +0.8 639,758 + SM_b21016 0.38 -0.5 639,758 + SM_b21016 0.38 +0.9 639,759 - SM_b21016 0.38 +1.2 639,759 - SM_b21016 0.38 +0.3 639,772 - SM_b21016 0.40 -2.1 639,803 + SM_b21016 0.43 +1.1 639,809 + SM_b21016 0.43 -0.7 639,810 - SM_b21016 0.43 -0.1 639,815 + SM_b21016 0.44 -0.8 640,011 - SM_b21016 0.63 +0.7 640,011 - SM_b21016 0.63 +0.1 640,013 + SM_b21016 0.63 +0.4 640,013 + SM_b21016 0.63 +0.6 640,014 - SM_b21016 0.63 +0.1 640,014 - SM_b21016 0.63 +0.4 640,014 - SM_b21016 0.63 -0.2 640,136 + SM_b21016 0.75 +0.9 640,136 + SM_b21016 0.75 +1.0 640,137 - SM_b21016 0.75 -0.5 640,205 + SM_b21016 0.81 -1.0 640,205 + SM_b21016 0.81 +0.2 640,205 + SM_b21016 0.81 -0.7 640,206 - SM_b21016 0.82 +5.1 640,206 - SM_b21016 0.82 +1.2 640,206 - SM_b21016 0.82 -0.4 640,206 - SM_b21016 0.82 -2.8
Or see this region's nucleotide sequence