Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20585

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20584 and SM_b20585 are separated by 209 nucleotidesSM_b20585 and SM_b20586 are separated by 122 nucleotides SM_b20584: SM_b20584 - hypothetical protein, at 1,598,712 to 1,599,374 _b20584 SM_b20585: SM_b20585 - gamma-glutamyltranspeptidase, at 1,599,584 to 1,601,329 _b20585 SM_b20586: SM_b20586 - IclR family transcriptional regulator, at 1,601,452 to 1,602,207 _b20586 Position (kb) 1599 1600 1601 1602Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1598.609 kb on + strandat 1598.614 kb on + strandat 1598.615 kb on - strandat 1598.637 kb on - strandat 1599.022 kb on - strand, within SM_b20584at 1599.044 kb on - strand, within SM_b20584at 1599.044 kb on - strand, within SM_b20584at 1599.093 kb on + strand, within SM_b20584at 1599.093 kb on + strand, within SM_b20584at 1599.093 kb on + strand, within SM_b20584at 1599.094 kb on - strand, within SM_b20584at 1599.094 kb on - strand, within SM_b20584at 1599.120 kb on + strand, within SM_b20584at 1599.360 kb on + strandat 1599.361 kb on - strandat 1599.470 kb on + strandat 1599.471 kb on - strandat 1599.510 kb on + strandat 1599.610 kb on - strandat 1599.638 kb on - strandat 1599.810 kb on - strand, within SM_b20585at 1599.926 kb on + strand, within SM_b20585at 1599.927 kb on - strand, within SM_b20585at 1599.927 kb on - strand, within SM_b20585at 1599.927 kb on - strand, within SM_b20585at 1600.031 kb on + strand, within SM_b20585at 1600.277 kb on + strand, within SM_b20585at 1600.277 kb on + strand, within SM_b20585at 1600.277 kb on + strand, within SM_b20585at 1600.277 kb on + strand, within SM_b20585at 1600.277 kb on + strand, within SM_b20585at 1600.278 kb on - strand, within SM_b20585at 1600.359 kb on - strand, within SM_b20585at 1600.395 kb on - strand, within SM_b20585at 1600.491 kb on - strand, within SM_b20585at 1600.491 kb on - strand, within SM_b20585at 1600.499 kb on + strand, within SM_b20585at 1600.500 kb on - strand, within SM_b20585at 1600.550 kb on + strand, within SM_b20585at 1600.550 kb on + strand, within SM_b20585at 1600.550 kb on + strand, within SM_b20585at 1600.551 kb on - strand, within SM_b20585at 1600.551 kb on - strand, within SM_b20585at 1600.625 kb on + strand, within SM_b20585at 1600.625 kb on + strand, within SM_b20585at 1600.767 kb on - strand, within SM_b20585at 1600.767 kb on - strand, within SM_b20585at 1600.875 kb on - strand, within SM_b20585at 1601.126 kb on + strand, within SM_b20585at 1601.126 kb on + strand, within SM_b20585at 1601.802 kb on - strand, within SM_b20586at 1601.871 kb on - strand, within SM_b20586at 1601.942 kb on + strand, within SM_b20586at 1601.943 kb on - strand, within SM_b20586at 1601.943 kb on - strand, within SM_b20586at 1601.955 kb on + strand, within SM_b20586at 1601.981 kb on + strand, within SM_b20586at 1601.982 kb on - strand, within SM_b20586at 1601.982 kb on - strand, within SM_b20586at 1601.982 kb on - strand, within SM_b20586at 1602.211 kb on - strandat 1602.307 kb on + strandat 1602.307 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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1,598,609 + -0.9
1,598,614 + -0.4
1,598,615 - +0.9
1,598,637 - -3.7
1,599,022 - SM_b20584 0.47 -2.4
1,599,044 - SM_b20584 0.50 -0.0
1,599,044 - SM_b20584 0.50 -0.5
1,599,093 + SM_b20584 0.57 -0.7
1,599,093 + SM_b20584 0.57 -1.1
1,599,093 + SM_b20584 0.57 +0.1
1,599,094 - SM_b20584 0.58 +1.1
1,599,094 - SM_b20584 0.58 -1.9
1,599,120 + SM_b20584 0.62 -0.0
1,599,360 + -0.8
1,599,361 - -0.1
1,599,470 + +0.5
1,599,471 - +1.0
1,599,510 + -0.1
1,599,610 - +2.6
1,599,638 - -2.1
1,599,810 - SM_b20585 0.13 -2.1
1,599,926 + SM_b20585 0.20 +0.9
1,599,927 - SM_b20585 0.20 +0.3
1,599,927 - SM_b20585 0.20 +0.6
1,599,927 - SM_b20585 0.20 +0.4
1,600,031 + SM_b20585 0.26 -0.7
1,600,277 + SM_b20585 0.40 +0.6
1,600,277 + SM_b20585 0.40 +0.3
1,600,277 + SM_b20585 0.40 -0.8
1,600,277 + SM_b20585 0.40 +1.4
1,600,277 + SM_b20585 0.40 +0.1
1,600,278 - SM_b20585 0.40 +0.1
1,600,359 - SM_b20585 0.44 +0.1
1,600,395 - SM_b20585 0.46 -1.0
1,600,491 - SM_b20585 0.52 +0.7
1,600,491 - SM_b20585 0.52 +0.4
1,600,499 + SM_b20585 0.52 -2.5
1,600,500 - SM_b20585 0.52 -1.5
1,600,550 + SM_b20585 0.55 +1.6
1,600,550 + SM_b20585 0.55 +0.4
1,600,550 + SM_b20585 0.55 +0.8
1,600,551 - SM_b20585 0.55 -1.7
1,600,551 - SM_b20585 0.55 -0.6
1,600,625 + SM_b20585 0.60 +0.4
1,600,625 + SM_b20585 0.60 +0.0
1,600,767 - SM_b20585 0.68 -2.5
1,600,767 - SM_b20585 0.68 +0.2
1,600,875 - SM_b20585 0.74 +0.4
1,601,126 + SM_b20585 0.88 +0.1
1,601,126 + SM_b20585 0.88 -1.2
1,601,802 - SM_b20586 0.46 -3.6
1,601,871 - SM_b20586 0.55 -1.5
1,601,942 + SM_b20586 0.65 -1.1
1,601,943 - SM_b20586 0.65 -1.9
1,601,943 - SM_b20586 0.65 +0.9
1,601,955 + SM_b20586 0.67 -0.6
1,601,981 + SM_b20586 0.70 +0.8
1,601,982 - SM_b20586 0.70 +2.8
1,601,982 - SM_b20586 0.70 -4.3
1,601,982 - SM_b20586 0.70 +1.3
1,602,211 - +1.2
1,602,307 + +2.0
1,602,307 + +0.1

Or see this region's nucleotide sequence