Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20297 and SM_b20298 overlap by 4 nucleotides SM_b20298 and SM_b20299 are separated by 13 nucleotides SM_b20299 and SM_b20300 are separated by 336 nucleotides
SM_b20297: SM_b20297 - permease, at 303,470 to 304,750
_b20297
SM_b20298: SM_b20298 - hypothetical protein, at 304,747 to 305,682
_b20298
SM_b20299: SM_b20299 - N-acetylneuraminate lyase, at 305,696 to 306,595
_b20299
SM_b20300: SM_b20300 - adenylate cyclase, at 306,932 to 308,845
_b20300
Position (kb) 305
306
307 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 305.102 kb on - strand, within SM_b20298 at 305.167 kb on + strand, within SM_b20298 at 305.167 kb on + strand, within SM_b20298 at 305.167 kb on + strand, within SM_b20298 at 305.167 kb on + strand, within SM_b20298 at 305.170 kb on - strand, within SM_b20298 at 305.219 kb on + strand, within SM_b20298 at 305.220 kb on - strand, within SM_b20298 at 305.371 kb on + strand, within SM_b20298 at 305.372 kb on - strand, within SM_b20298 at 305.596 kb on + strand at 305.596 kb on + strand at 305.596 kb on + strand at 305.597 kb on - strand at 305.598 kb on + strand at 305.598 kb on + strand at 305.598 kb on + strand at 305.599 kb on - strand at 305.599 kb on - strand at 305.693 kb on - strand at 305.693 kb on - strand at 305.714 kb on + strand at 305.816 kb on + strand, within SM_b20299 at 305.816 kb on + strand, within SM_b20299 at 305.816 kb on + strand, within SM_b20299 at 305.817 kb on - strand, within SM_b20299 at 305.817 kb on - strand, within SM_b20299 at 305.817 kb on - strand, within SM_b20299 at 305.873 kb on + strand, within SM_b20299 at 306.017 kb on + strand, within SM_b20299 at 306.017 kb on + strand, within SM_b20299 at 306.021 kb on - strand, within SM_b20299 at 306.021 kb on - strand, within SM_b20299 at 306.096 kb on - strand, within SM_b20299 at 306.096 kb on - strand, within SM_b20299 at 306.097 kb on + strand, within SM_b20299 at 306.097 kb on + strand, within SM_b20299 at 306.098 kb on - strand, within SM_b20299 at 306.098 kb on - strand, within SM_b20299 at 306.181 kb on + strand, within SM_b20299 at 306.182 kb on - strand, within SM_b20299 at 306.182 kb on - strand, within SM_b20299 at 306.182 kb on - strand, within SM_b20299 at 306.242 kb on + strand, within SM_b20299 at 306.243 kb on - strand, within SM_b20299 at 306.243 kb on - strand, within SM_b20299 at 306.243 kb on - strand, within SM_b20299 at 306.312 kb on - strand, within SM_b20299 at 306.312 kb on - strand, within SM_b20299 at 306.314 kb on - strand, within SM_b20299 at 306.594 kb on - strand at 306.661 kb on - strand at 306.737 kb on + strand at 306.738 kb on - strand at 306.771 kb on + strand at 306.772 kb on - strand at 306.780 kb on - strand at 306.900 kb on - strand at 306.940 kb on + strand at 306.977 kb on + strand at 306.977 kb on + strand at 306.978 kb on - strand at 306.980 kb on - strand at 307.013 kb on + strand at 307.013 kb on + strand at 307.013 kb on + strand at 307.051 kb on - strand at 307.051 kb on - strand at 307.051 kb on - strand at 307.051 kb on - strand at 307.051 kb on - strand at 307.218 kb on + strand, within SM_b20300 at 307.218 kb on + strand, within SM_b20300 at 307.218 kb on + strand, within SM_b20300 at 307.218 kb on + strand, within SM_b20300 at 307.218 kb on + strand, within SM_b20300 at 307.219 kb on - strand, within SM_b20300 at 307.352 kb on + strand, within SM_b20300 at 307.545 kb on + strand, within SM_b20300
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 305,102 - SM_b20298 0.38 -1.7 305,167 + SM_b20298 0.45 -0.7 305,167 + SM_b20298 0.45 +0.6 305,167 + SM_b20298 0.45 -1.1 305,167 + SM_b20298 0.45 +2.1 305,170 - SM_b20298 0.45 -2.8 305,219 + SM_b20298 0.50 +0.0 305,220 - SM_b20298 0.51 +0.6 305,371 + SM_b20298 0.67 +0.5 305,372 - SM_b20298 0.67 -1.7 305,596 + -2.4 305,596 + +0.2 305,596 + +0.9 305,597 - +0.6 305,598 + -1.0 305,598 + +2.7 305,598 + +0.3 305,599 - +1.1 305,599 - +0.1 305,693 - -0.6 305,693 - +0.5 305,714 + +0.0 305,816 + SM_b20299 0.13 +0.9 305,816 + SM_b20299 0.13 +1.9 305,816 + SM_b20299 0.13 +0.4 305,817 - SM_b20299 0.13 +0.3 305,817 - SM_b20299 0.13 +0.3 305,817 - SM_b20299 0.13 +0.3 305,873 + SM_b20299 0.20 +0.6 306,017 + SM_b20299 0.36 +3.1 306,017 + SM_b20299 0.36 +1.4 306,021 - SM_b20299 0.36 -1.5 306,021 - SM_b20299 0.36 +0.6 306,096 - SM_b20299 0.44 +0.3 306,096 - SM_b20299 0.44 -0.3 306,097 + SM_b20299 0.45 +1.8 306,097 + SM_b20299 0.45 -0.1 306,098 - SM_b20299 0.45 -0.1 306,098 - SM_b20299 0.45 -2.3 306,181 + SM_b20299 0.54 +0.7 306,182 - SM_b20299 0.54 +0.0 306,182 - SM_b20299 0.54 -3.2 306,182 - SM_b20299 0.54 -0.5 306,242 + SM_b20299 0.61 -0.5 306,243 - SM_b20299 0.61 +1.1 306,243 - SM_b20299 0.61 -0.4 306,243 - SM_b20299 0.61 -2.3 306,312 - SM_b20299 0.68 -0.2 306,312 - SM_b20299 0.68 +0.6 306,314 - SM_b20299 0.69 +0.6 306,594 - +1.4 306,661 - +0.9 306,737 + +1.0 306,738 - +1.3 306,771 + -0.2 306,772 - +0.4 306,780 - -0.1 306,900 - -1.1 306,940 + -0.8 306,977 + -3.1 306,977 + -3.9 306,978 - +1.0 306,980 - +0.9 307,013 + +0.2 307,013 + -3.3 307,013 + -1.7 307,051 - -0.0 307,051 - -1.4 307,051 - +0.1 307,051 - +0.5 307,051 - -0.1 307,218 + SM_b20300 0.15 -0.3 307,218 + SM_b20300 0.15 -2.0 307,218 + SM_b20300 0.15 +2.2 307,218 + SM_b20300 0.15 +0.8 307,218 + SM_b20300 0.15 -1.0 307,219 - SM_b20300 0.15 +2.0 307,352 + SM_b20300 0.22 +0.4 307,545 + SM_b20300 0.32 -0.3
Or see this region's nucleotide sequence