Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20238 and SM_b20239 are separated by 2 nucleotides SM_b20239 and SM_b20240 are separated by 19 nucleotides
SM_b20238: SM_b20238 - hypothetical protein, at 242,403 to 243,197
_b20238
SM_b20239: SM_b20239 - dTDP-glucose 4,6-dehydratase, at 243,200 to 244,240
_b20239
SM_b20240: SM_b20240 - hypothetical protein, at 244,260 to 245,378
_b20240
Position (kb) 243
244
245 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 242.221 kb on + strand at 242.221 kb on + strand at 242.222 kb on - strand at 242.241 kb on - strand at 242.383 kb on + strand at 242.384 kb on - strand at 242.474 kb on - strand at 242.755 kb on + strand, within SM_b20238 at 242.756 kb on - strand, within SM_b20238 at 242.869 kb on + strand, within SM_b20238 at 242.906 kb on + strand, within SM_b20238 at 242.906 kb on + strand, within SM_b20238 at 242.947 kb on - strand, within SM_b20238 at 242.983 kb on + strand, within SM_b20238 at 242.984 kb on - strand, within SM_b20238 at 242.984 kb on - strand, within SM_b20238 at 242.984 kb on - strand, within SM_b20238 at 242.984 kb on - strand, within SM_b20238 at 243.077 kb on - strand, within SM_b20238 at 243.304 kb on + strand, within SM_b20239 at 243.567 kb on + strand, within SM_b20239 at 243.567 kb on + strand, within SM_b20239 at 243.567 kb on + strand, within SM_b20239 at 243.567 kb on + strand, within SM_b20239 at 243.568 kb on - strand, within SM_b20239 at 243.684 kb on + strand, within SM_b20239 at 243.684 kb on + strand, within SM_b20239 at 243.685 kb on - strand, within SM_b20239 at 243.777 kb on + strand, within SM_b20239 at 243.816 kb on + strand, within SM_b20239 at 243.816 kb on + strand, within SM_b20239 at 243.817 kb on - strand, within SM_b20239 at 243.817 kb on - strand, within SM_b20239 at 243.817 kb on - strand, within SM_b20239 at 243.853 kb on - strand, within SM_b20239 at 244.065 kb on + strand, within SM_b20239 at 244.113 kb on + strand, within SM_b20239 at 244.113 kb on + strand, within SM_b20239 at 244.113 kb on + strand, within SM_b20239 at 244.114 kb on - strand, within SM_b20239 at 244.114 kb on - strand, within SM_b20239 at 244.148 kb on + strand at 244.148 kb on + strand at 244.159 kb on + strand at 244.159 kb on + strand at 244.160 kb on - strand at 244.160 kb on - strand at 244.234 kb on + strand at 244.234 kb on + strand at 244.261 kb on + strand at 244.384 kb on + strand, within SM_b20240 at 244.873 kb on + strand, within SM_b20240 at 245.039 kb on - strand, within SM_b20240 at 245.104 kb on + strand, within SM_b20240 at 245.104 kb on + strand, within SM_b20240 at 245.105 kb on - strand, within SM_b20240 at 245.105 kb on - strand, within SM_b20240 at 245.179 kb on + strand, within SM_b20240 at 245.180 kb on - strand, within SM_b20240
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 242,221 + -0.9 242,221 + +1.0 242,222 - +0.4 242,241 - +0.2 242,383 + +2.1 242,384 - +0.2 242,474 - -4.6 242,755 + SM_b20238 0.44 -0.3 242,756 - SM_b20238 0.44 +0.3 242,869 + SM_b20238 0.59 +0.7 242,906 + SM_b20238 0.63 +0.2 242,906 + SM_b20238 0.63 +1.0 242,947 - SM_b20238 0.68 +0.5 242,983 + SM_b20238 0.73 +0.3 242,984 - SM_b20238 0.73 +0.2 242,984 - SM_b20238 0.73 +0.4 242,984 - SM_b20238 0.73 -0.1 242,984 - SM_b20238 0.73 +0.0 243,077 - SM_b20238 0.85 -1.5 243,304 + SM_b20239 0.10 -0.3 243,567 + SM_b20239 0.35 -1.5 243,567 + SM_b20239 0.35 +0.8 243,567 + SM_b20239 0.35 -0.4 243,567 + SM_b20239 0.35 +0.9 243,568 - SM_b20239 0.35 -1.3 243,684 + SM_b20239 0.46 +0.6 243,684 + SM_b20239 0.46 -1.1 243,685 - SM_b20239 0.47 -1.7 243,777 + SM_b20239 0.55 +0.1 243,816 + SM_b20239 0.59 +0.5 243,816 + SM_b20239 0.59 -0.9 243,817 - SM_b20239 0.59 -1.2 243,817 - SM_b20239 0.59 -2.1 243,817 - SM_b20239 0.59 -0.7 243,853 - SM_b20239 0.63 -0.3 244,065 + SM_b20239 0.83 -0.7 244,113 + SM_b20239 0.88 +0.0 244,113 + SM_b20239 0.88 +0.4 244,113 + SM_b20239 0.88 -0.4 244,114 - SM_b20239 0.88 -2.5 244,114 - SM_b20239 0.88 +0.1 244,148 + +0.5 244,148 + +1.4 244,159 + -2.4 244,159 + -0.7 244,160 - -2.5 244,160 - -0.1 244,234 + +1.2 244,234 + +0.7 244,261 + -1.7 244,384 + SM_b20240 0.11 +1.8 244,873 + SM_b20240 0.55 +0.1 245,039 - SM_b20240 0.70 +0.1 245,104 + SM_b20240 0.75 -1.0 245,104 + SM_b20240 0.75 +1.0 245,105 - SM_b20240 0.76 +0.1 245,105 - SM_b20240 0.76 -0.1 245,179 + SM_b20240 0.82 +0.0 245,180 - SM_b20240 0.82 +0.3
Or see this region's nucleotide sequence