Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20198 and SM_b20199 are separated by 32 nucleotides SM_b20199 and SM_b20200 are separated by 2 nucleotides
SM_b20198: SM_b20198 - ribulose bisophosphate carboxylase, at 205,767 to 207,227
_b20198
SM_b20199: SM_b20199 - fructose-1,6-bisphosphate aldolase, at 207,260 to 208,339
_b20199
SM_b20200: SM_b20200 - transketolase, at 208,342 to 210,426
_b20200
Position (kb) 207
208
209 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 206.318 kb on + strand, within SM_b20198 at 206.320 kb on + strand, within SM_b20198 at 206.321 kb on - strand, within SM_b20198 at 206.503 kb on + strand, within SM_b20198 at 206.503 kb on + strand, within SM_b20198 at 206.504 kb on - strand, within SM_b20198 at 206.560 kb on + strand, within SM_b20198 at 206.561 kb on - strand, within SM_b20198 at 206.566 kb on + strand, within SM_b20198 at 206.567 kb on - strand, within SM_b20198 at 206.665 kb on + strand, within SM_b20198 at 206.666 kb on - strand, within SM_b20198 at 206.666 kb on - strand, within SM_b20198 at 206.666 kb on - strand, within SM_b20198 at 206.666 kb on - strand, within SM_b20198 at 206.788 kb on + strand, within SM_b20198 at 206.920 kb on + strand, within SM_b20198 at 206.929 kb on + strand, within SM_b20198 at 206.930 kb on - strand, within SM_b20198 at 207.133 kb on + strand at 207.133 kb on + strand at 207.133 kb on + strand at 207.227 kb on + strand at 207.227 kb on + strand at 207.227 kb on + strand at 207.230 kb on + strand at 207.548 kb on + strand, within SM_b20199 at 207.549 kb on - strand, within SM_b20199 at 207.549 kb on - strand, within SM_b20199 at 207.549 kb on - strand, within SM_b20199 at 207.731 kb on - strand, within SM_b20199 at 207.739 kb on - strand, within SM_b20199 at 207.957 kb on - strand, within SM_b20199 at 207.979 kb on + strand, within SM_b20199 at 207.979 kb on + strand, within SM_b20199 at 207.981 kb on + strand, within SM_b20199 at 207.982 kb on - strand, within SM_b20199 at 208.122 kb on + strand, within SM_b20199 at 208.287 kb on + strand at 208.400 kb on - strand at 208.621 kb on - strand, within SM_b20200 at 208.793 kb on + strand, within SM_b20200 at 208.793 kb on + strand, within SM_b20200 at 208.793 kb on + strand, within SM_b20200 at 208.794 kb on - strand, within SM_b20200 at 208.794 kb on - strand, within SM_b20200 at 208.794 kb on - strand, within SM_b20200 at 208.811 kb on - strand, within SM_b20200 at 208.811 kb on - strand, within SM_b20200 at 208.811 kb on - strand, within SM_b20200 at 208.811 kb on - strand, within SM_b20200 at 209.045 kb on + strand, within SM_b20200 at 209.045 kb on + strand, within SM_b20200 at 209.096 kb on + strand, within SM_b20200 at 209.097 kb on - strand, within SM_b20200 at 209.195 kb on + strand, within SM_b20200 at 209.204 kb on + strand, within SM_b20200 at 209.205 kb on - strand, within SM_b20200 at 209.205 kb on - strand, within SM_b20200
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 206,318 + SM_b20198 0.38 +1.2 206,320 + SM_b20198 0.38 +3.7 206,321 - SM_b20198 0.38 -0.3 206,503 + SM_b20198 0.50 -0.1 206,503 + SM_b20198 0.50 -0.1 206,504 - SM_b20198 0.50 +0.6 206,560 + SM_b20198 0.54 -2.3 206,561 - SM_b20198 0.54 -0.8 206,566 + SM_b20198 0.55 +0.9 206,567 - SM_b20198 0.55 +0.5 206,665 + SM_b20198 0.61 -4.1 206,666 - SM_b20198 0.62 -3.2 206,666 - SM_b20198 0.62 +0.1 206,666 - SM_b20198 0.62 +0.3 206,666 - SM_b20198 0.62 -0.9 206,788 + SM_b20198 0.70 +1.0 206,920 + SM_b20198 0.79 +0.1 206,929 + SM_b20198 0.80 -0.6 206,930 - SM_b20198 0.80 +0.9 207,133 + -2.1 207,133 + -0.5 207,133 + -0.3 207,227 + -2.9 207,227 + -2.8 207,227 + -0.7 207,230 + -0.3 207,548 + SM_b20199 0.27 +0.3 207,549 - SM_b20199 0.27 -0.2 207,549 - SM_b20199 0.27 -2.3 207,549 - SM_b20199 0.27 -0.1 207,731 - SM_b20199 0.44 -0.4 207,739 - SM_b20199 0.44 -0.0 207,957 - SM_b20199 0.65 +0.7 207,979 + SM_b20199 0.67 -2.4 207,979 + SM_b20199 0.67 -1.6 207,981 + SM_b20199 0.67 +1.2 207,982 - SM_b20199 0.67 -0.9 208,122 + SM_b20199 0.80 -0.1 208,287 + -0.2 208,400 - -0.6 208,621 - SM_b20200 0.13 +0.1 208,793 + SM_b20200 0.22 +0.3 208,793 + SM_b20200 0.22 +0.5 208,793 + SM_b20200 0.22 -2.1 208,794 - SM_b20200 0.22 -4.3 208,794 - SM_b20200 0.22 -0.9 208,794 - SM_b20200 0.22 +1.3 208,811 - SM_b20200 0.22 -2.4 208,811 - SM_b20200 0.22 -0.2 208,811 - SM_b20200 0.22 +0.1 208,811 - SM_b20200 0.22 -0.5 209,045 + SM_b20200 0.34 +1.2 209,045 + SM_b20200 0.34 +0.7 209,096 + SM_b20200 0.36 -0.5 209,097 - SM_b20200 0.36 -0.9 209,195 + SM_b20200 0.41 -0.3 209,204 + SM_b20200 0.41 +0.2 209,205 - SM_b20200 0.41 +0.7 209,205 - SM_b20200 0.41 +0.6
Or see this region's nucleotide sequence