Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20170 and SM_b20171 overlap by 4 nucleotides SM_b20171 and SM_b20172 are separated by 13 nucleotides SM_b20172 and SM_b20173 are separated by 177 nucleotides
SM_b20170: SM_b20170 - glutathione-dependent formaldehyde dehydrogenase, at 188,406 to 189,533
_b20170
SM_b20171: SM_b20171 - carboxylesterase, at 189,530 to 190,372
_b20171
SM_b20172: SM_b20172 - cytochrome c protein, at 190,386 to 190,796
_b20172
SM_b20173: SM_b20173 - methanol dehydrogenase, large subunit, at 190,974 to 192,779
_b20173
Position (kb) 190
191 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 189.528 kb on + strand at 189.528 kb on + strand at 189.552 kb on + strand at 189.638 kb on + strand, within SM_b20171 at 189.639 kb on - strand, within SM_b20171 at 189.684 kb on - strand, within SM_b20171 at 189.822 kb on - strand, within SM_b20171 at 189.848 kb on + strand, within SM_b20171 at 189.849 kb on - strand, within SM_b20171 at 189.884 kb on + strand, within SM_b20171 at 189.893 kb on + strand at 189.893 kb on + strand, within SM_b20171 at 189.893 kb on + strand, within SM_b20171 at 189.894 kb on - strand, within SM_b20171 at 189.894 kb on - strand, within SM_b20171 at 189.894 kb on - strand, within SM_b20171 at 189.894 kb on - strand, within SM_b20171 at 189.894 kb on - strand, within SM_b20171 at 189.894 kb on - strand, within SM_b20171 at 189.894 kb on - strand, within SM_b20171 at 189.899 kb on + strand, within SM_b20171 at 189.899 kb on + strand, within SM_b20171 at 189.900 kb on - strand, within SM_b20171 at 189.900 kb on - strand, within SM_b20171 at 189.900 kb on - strand, within SM_b20171 at 189.900 kb on - strand, within SM_b20171 at 189.902 kb on - strand, within SM_b20171 at 190.133 kb on + strand, within SM_b20171 at 190.133 kb on + strand, within SM_b20171 at 190.133 kb on + strand, within SM_b20171 at 190.178 kb on - strand, within SM_b20171 at 190.304 kb on + strand at 190.307 kb on + strand at 190.307 kb on + strand at 190.615 kb on - strand, within SM_b20172 at 190.615 kb on - strand, within SM_b20172 at 190.620 kb on + strand, within SM_b20172 at 190.621 kb on - strand, within SM_b20172 at 190.621 kb on - strand, within SM_b20172 at 190.658 kb on + strand, within SM_b20172 at 190.658 kb on + strand, within SM_b20172 at 190.768 kb on + strand at 190.769 kb on - strand at 190.769 kb on - strand at 190.776 kb on + strand at 190.836 kb on - strand at 190.836 kb on - strand at 190.836 kb on - strand at 190.843 kb on + strand at 190.988 kb on + strand at 190.988 kb on + strand at 190.989 kb on - strand at 190.989 kb on - strand at 191.003 kb on + strand at 191.003 kb on + strand at 191.100 kb on + strand at 191.235 kb on + strand, within SM_b20173 at 191.235 kb on + strand, within SM_b20173 at 191.235 kb on + strand, within SM_b20173 at 191.236 kb on - strand, within SM_b20173 at 191.236 kb on - strand, within SM_b20173 at 191.243 kb on + strand, within SM_b20173 at 191.265 kb on + strand, within SM_b20173 at 191.308 kb on - strand, within SM_b20173 at 191.477 kb on + strand, within SM_b20173 at 191.477 kb on + strand, within SM_b20173 at 191.616 kb on + strand, within SM_b20173 at 191.616 kb on + strand, within SM_b20173 at 191.617 kb on - strand, within SM_b20173 at 191.640 kb on - strand, within SM_b20173 at 191.758 kb on - strand, within SM_b20173 at 191.764 kb on - strand, within SM_b20173 at 191.785 kb on + strand, within SM_b20173 at 191.787 kb on + strand, within SM_b20173 at 191.788 kb on - strand at 191.790 kb on + strand, within SM_b20173 at 191.790 kb on + strand, within SM_b20173
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 189,528 + -0.4 189,528 + +0.4 189,552 + +0.7 189,638 + SM_b20171 0.13 -1.1 189,639 - SM_b20171 0.13 +1.2 189,684 - SM_b20171 0.18 +0.0 189,822 - SM_b20171 0.35 +1.1 189,848 + SM_b20171 0.38 +0.3 189,849 - SM_b20171 0.38 -1.1 189,884 + SM_b20171 0.42 +0.1 189,893 + +1.7 189,893 + SM_b20171 0.43 -4.5 189,893 + SM_b20171 0.43 +0.9 189,894 - SM_b20171 0.43 -0.8 189,894 - SM_b20171 0.43 +0.6 189,894 - SM_b20171 0.43 -0.2 189,894 - SM_b20171 0.43 +4.8 189,894 - SM_b20171 0.43 -0.9 189,894 - SM_b20171 0.43 +0.5 189,894 - SM_b20171 0.43 -1.8 189,899 + SM_b20171 0.44 +0.8 189,899 + SM_b20171 0.44 +0.1 189,900 - SM_b20171 0.44 -2.8 189,900 - SM_b20171 0.44 -0.4 189,900 - SM_b20171 0.44 -1.1 189,900 - SM_b20171 0.44 +0.7 189,902 - SM_b20171 0.44 +0.3 190,133 + SM_b20171 0.72 -0.9 190,133 + SM_b20171 0.72 -0.6 190,133 + SM_b20171 0.72 -3.4 190,178 - SM_b20171 0.77 +0.6 190,304 + +0.8 190,307 + -2.5 190,307 + +0.7 190,615 - SM_b20172 0.56 +0.9 190,615 - SM_b20172 0.56 +1.6 190,620 + SM_b20172 0.57 +0.8 190,621 - SM_b20172 0.57 +0.4 190,621 - SM_b20172 0.57 +0.4 190,658 + SM_b20172 0.66 +0.4 190,658 + SM_b20172 0.66 +0.5 190,768 + +0.3 190,769 - -0.1 190,769 - -0.0 190,776 + -1.2 190,836 - -1.0 190,836 - +2.1 190,836 - +1.2 190,843 + -3.7 190,988 + +1.7 190,988 + +0.2 190,989 - +0.3 190,989 - -0.4 191,003 + -0.3 191,003 + +0.2 191,100 + +0.3 191,235 + SM_b20173 0.14 +0.4 191,235 + SM_b20173 0.14 +1.1 191,235 + SM_b20173 0.14 +1.3 191,236 - SM_b20173 0.15 -0.7 191,236 - SM_b20173 0.15 -3.8 191,243 + SM_b20173 0.15 -0.5 191,265 + SM_b20173 0.16 -2.9 191,308 - SM_b20173 0.18 +0.4 191,477 + SM_b20173 0.28 +0.5 191,477 + SM_b20173 0.28 -0.4 191,616 + SM_b20173 0.36 +1.3 191,616 + SM_b20173 0.36 -0.2 191,617 - SM_b20173 0.36 +0.5 191,640 - SM_b20173 0.37 +0.5 191,758 - SM_b20173 0.43 +2.0 191,764 - SM_b20173 0.44 -0.0 191,785 + SM_b20173 0.45 -0.4 191,787 + SM_b20173 0.45 -0.3 191,788 - -0.7 191,790 + SM_b20173 0.45 +1.7 191,790 + SM_b20173 0.45 +1.5
Or see this region's nucleotide sequence