Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20145 and SM_b20146 overlap by 1 nucleotides SM_b20146 and SM_b20147 overlap by 4 nucleotides SM_b20147 and SM_b20148 are separated by 224 nucleotides SM_b20148 and SM_b20149 are separated by 3 nucleotides
SM_b20145: SM_b20145 - hypothetical protein, at 160,206 to 161,393
_b20145
SM_b20146: SM_b20146 - pyridoxal phosphate biosynthetic protein, at 161,393 to 162,358
_b20146
SM_b20147: SM_b20147 - alcohol dehydrogenase, at 162,355 to 163,461
_b20147
SM_b20148: SM_b20148 - transcriptional regulator, at 163,686 to 164,387
_b20148
SM_b20149: SM_b20149 - hypothetical protein, at 164,391 to 165,422
_b20149
Position (kb) 162
163
164 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 161.500 kb on + strand, within SM_b20146 at 161.505 kb on - strand, within SM_b20146 at 161.505 kb on - strand, within SM_b20146 at 161.570 kb on + strand, within SM_b20146 at 161.570 kb on + strand, within SM_b20146 at 161.585 kb on - strand, within SM_b20146 at 161.735 kb on - strand, within SM_b20146 at 161.801 kb on + strand, within SM_b20146 at 161.801 kb on + strand, within SM_b20146 at 161.802 kb on - strand, within SM_b20146 at 161.803 kb on + strand, within SM_b20146 at 161.804 kb on - strand, within SM_b20146 at 161.804 kb on - strand, within SM_b20146 at 162.110 kb on + strand at 162.110 kb on + strand, within SM_b20146 at 162.144 kb on - strand, within SM_b20146 at 162.201 kb on + strand, within SM_b20146 at 162.202 kb on - strand, within SM_b20146 at 162.271 kb on + strand at 162.308 kb on + strand at 162.309 kb on - strand at 162.360 kb on + strand at 162.630 kb on - strand, within SM_b20147 at 162.630 kb on - strand, within SM_b20147 at 162.648 kb on - strand, within SM_b20147 at 162.862 kb on + strand, within SM_b20147 at 162.862 kb on + strand, within SM_b20147 at 162.862 kb on + strand, within SM_b20147 at 162.949 kb on - strand, within SM_b20147 at 162.949 kb on - strand, within SM_b20147 at 162.998 kb on - strand, within SM_b20147 at 163.063 kb on + strand, within SM_b20147 at 163.313 kb on + strand, within SM_b20147 at 163.313 kb on + strand, within SM_b20147 at 163.313 kb on + strand, within SM_b20147 at 163.313 kb on + strand, within SM_b20147 at 163.314 kb on - strand, within SM_b20147 at 163.459 kb on + strand at 163.627 kb on + strand at 163.628 kb on - strand at 163.687 kb on + strand at 163.906 kb on + strand, within SM_b20148 at 163.907 kb on - strand, within SM_b20148 at 164.092 kb on + strand, within SM_b20148 at 164.093 kb on - strand, within SM_b20148 at 164.093 kb on - strand, within SM_b20148 at 164.191 kb on + strand, within SM_b20148 at 164.220 kb on + strand, within SM_b20148 at 164.220 kb on + strand, within SM_b20148 at 164.220 kb on + strand, within SM_b20148 at 164.248 kb on - strand, within SM_b20148 at 164.393 kb on - strand at 164.409 kb on + strand at 164.410 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 161,500 + SM_b20146 0.11 +1.0 161,505 - SM_b20146 0.12 +1.7 161,505 - SM_b20146 0.12 +0.3 161,570 + SM_b20146 0.18 +1.7 161,570 + SM_b20146 0.18 -2.8 161,585 - SM_b20146 0.20 +0.6 161,735 - SM_b20146 0.35 +1.3 161,801 + SM_b20146 0.42 -1.0 161,801 + SM_b20146 0.42 +0.7 161,802 - SM_b20146 0.42 -2.9 161,803 + SM_b20146 0.42 +1.2 161,804 - SM_b20146 0.43 -0.2 161,804 - SM_b20146 0.43 -2.8 162,110 + -0.3 162,110 + SM_b20146 0.74 +0.4 162,144 - SM_b20146 0.78 +0.1 162,201 + SM_b20146 0.84 -3.6 162,202 - SM_b20146 0.84 +0.3 162,271 + -1.1 162,308 + +0.3 162,309 - -1.9 162,360 + -1.6 162,630 - SM_b20147 0.25 +0.3 162,630 - SM_b20147 0.25 -1.8 162,648 - SM_b20147 0.26 +1.7 162,862 + SM_b20147 0.46 +0.0 162,862 + SM_b20147 0.46 +0.2 162,862 + SM_b20147 0.46 -0.6 162,949 - SM_b20147 0.54 +0.0 162,949 - SM_b20147 0.54 -0.3 162,998 - SM_b20147 0.58 +1.3 163,063 + SM_b20147 0.64 -0.3 163,313 + SM_b20147 0.87 -2.2 163,313 + SM_b20147 0.87 -1.2 163,313 + SM_b20147 0.87 -1.2 163,313 + SM_b20147 0.87 +0.1 163,314 - SM_b20147 0.87 +0.2 163,459 + -3.5 163,627 + -0.8 163,628 - +0.3 163,687 + +0.2 163,906 + SM_b20148 0.31 -3.0 163,907 - SM_b20148 0.31 +0.4 164,092 + SM_b20148 0.58 +1.3 164,093 - SM_b20148 0.58 +1.9 164,093 - SM_b20148 0.58 +0.5 164,191 + SM_b20148 0.72 -1.0 164,220 + SM_b20148 0.76 +0.7 164,220 + SM_b20148 0.76 +1.5 164,220 + SM_b20148 0.76 -1.5 164,248 - SM_b20148 0.80 +5.0 164,393 - +1.7 164,409 + -0.3 164,410 - +0.8
Or see this region's nucleotide sequence