Experiment: Choline chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_473 and Pf1N1B4_474 are separated by 136 nucleotides
Pf1N1B4_473 - DNA internalization-related competence protein ComEC/Rec2, at 563,086 to 565,320
_473
Pf1N1B4_474 - FIG00954461: hypothetical protein, at 565,457 to 565,972
_474
Position (kb) 565
566 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 564.608 kb on + strand, within Pf1N1B4_473 at 564.608 kb on + strand at 564.609 kb on - strand, within Pf1N1B4_473 at 564.609 kb on - strand, within Pf1N1B4_473 at 564.881 kb on + strand, within Pf1N1B4_473 at 564.882 kb on - strand, within Pf1N1B4_473 at 565.174 kb on + strand at 565.174 kb on + strand at 565.175 kb on - strand at 565.175 kb on - strand at 565.175 kb on - strand at 565.258 kb on + strand at 565.262 kb on - strand at 565.262 kb on - strand at 565.320 kb on + strand at 565.320 kb on + strand at 565.321 kb on + strand at 565.371 kb on + strand at 565.371 kb on + strand at 565.371 kb on + strand at 565.371 kb on + strand at 565.371 kb on + strand at 565.371 kb on + strand at 565.371 kb on + strand at 565.372 kb on - strand at 565.379 kb on + strand at 565.414 kb on - strand at 565.426 kb on + strand at 565.426 kb on + strand at 565.426 kb on + strand at 565.426 kb on + strand at 565.426 kb on + strand at 565.426 kb on + strand at 565.426 kb on + strand at 565.426 kb on + strand at 565.426 kb on + strand at 565.426 kb on + strand at 565.426 kb on + strand at 565.426 kb on + strand at 565.427 kb on - strand at 565.427 kb on - strand at 565.427 kb on - strand at 565.456 kb on + strand at 565.481 kb on + strand at 565.481 kb on + strand at 565.745 kb on - strand, within Pf1N1B4_474 at 565.745 kb on - strand, within Pf1N1B4_474 at 565.745 kb on - strand, within Pf1N1B4_474 at 565.745 kb on - strand, within Pf1N1B4_474 at 565.745 kb on - strand, within Pf1N1B4_474 at 565.749 kb on - strand, within Pf1N1B4_474 at 565.898 kb on + strand, within Pf1N1B4_474 at 565.898 kb on + strand, within Pf1N1B4_474 at 565.916 kb on + strand, within Pf1N1B4_474 at 565.916 kb on + strand, within Pf1N1B4_474 at 565.916 kb on + strand, within Pf1N1B4_474 at 565.916 kb on + strand, within Pf1N1B4_474 at 565.916 kb on + strand, within Pf1N1B4_474 at 565.917 kb on - strand, within Pf1N1B4_474 at 565.917 kb on - strand, within Pf1N1B4_474 at 565.917 kb on - strand, within Pf1N1B4_474 at 565.917 kb on - strand, within Pf1N1B4_474 at 565.955 kb on - strand at 566.009 kb on + strand at 566.009 kb on + strand at 566.024 kb on + strand at 566.024 kb on + strand at 566.025 kb on - strand at 566.025 kb on - strand at 566.025 kb on - strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.061 kb on + strand at 566.062 kb on - strand at 566.062 kb on - strand at 566.062 kb on - strand at 566.062 kb on - strand at 566.062 kb on - strand at 566.062 kb on - strand at 566.062 kb on - strand at 566.062 kb on - strand at 566.062 kb on - strand at 566.062 kb on - strand at 566.062 kb on - strand at 566.062 kb on - strand at 566.065 kb on + strand at 566.065 kb on + strand at 566.418 kb on + strand at 566.557 kb on + strand at 566.557 kb on + strand at 566.557 kb on + strand at 566.557 kb on + strand at 566.557 kb on + strand at 566.557 kb on + strand at 566.557 kb on + strand at 566.557 kb on + strand at 566.557 kb on + strand at 566.557 kb on + strand at 566.558 kb on - strand at 566.558 kb on - strand at 566.558 kb on - strand at 566.558 kb on - strand at 566.558 kb on - strand at 566.558 kb on - strand at 566.558 kb on - strand at 566.626 kb on + strand at 566.626 kb on + strand at 566.626 kb on + strand at 566.626 kb on + strand at 566.626 kb on + strand at 566.626 kb on + strand at 566.626 kb on + strand at 566.626 kb on + strand at 566.626 kb on + strand at 566.627 kb on - strand at 566.627 kb on - strand at 566.627 kb on - strand at 566.627 kb on - strand at 566.627 kb on - strand at 566.627 kb on - strand at 566.627 kb on - strand at 566.627 kb on - strand at 566.627 kb on - strand at 566.695 kb on + strand at 566.695 kb on + strand at 566.695 kb on + strand at 566.695 kb on + strand at 566.695 kb on + strand at 566.695 kb on + strand at 566.695 kb on + strand at 566.695 kb on + strand at 566.695 kb on + strand at 566.695 kb on + strand at 566.695 kb on + strand at 566.695 kb on + strand at 566.695 kb on + strand at 566.696 kb on - strand at 566.696 kb on - strand at 566.696 kb on - strand at 566.696 kb on - strand at 566.696 kb on - strand at 566.696 kb on - strand at 566.696 kb on - strand at 566.696 kb on - strand at 566.764 kb on + strand at 566.764 kb on + strand at 566.764 kb on + strand at 566.764 kb on + strand at 566.764 kb on + strand at 566.764 kb on + strand at 566.764 kb on + strand at 566.764 kb on + strand at 566.764 kb on + strand at 566.764 kb on + strand at 566.765 kb on - strand at 566.765 kb on - strand at 566.765 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 200 mM remove 564,608 + Pf1N1B4_473 0.68 +1.5 564,608 + +0.6 564,609 - Pf1N1B4_473 0.68 +0.5 564,609 - Pf1N1B4_473 0.68 +1.2 564,881 + Pf1N1B4_473 0.80 -1.1 564,882 - Pf1N1B4_473 0.80 -0.4 565,174 + -0.6 565,174 + +0.8 565,175 - -0.4 565,175 - +1.5 565,175 - -0.9 565,258 + -0.1 565,262 - +0.1 565,262 - -1.9 565,320 + +0.5 565,320 + +0.9 565,321 + -0.5 565,371 + -1.6 565,371 + -0.8 565,371 + +0.9 565,371 + -1.4 565,371 + -0.1 565,371 + +2.9 565,371 + +0.6 565,372 - -2.1 565,379 + +0.8 565,414 - -0.6 565,426 + +1.5 565,426 + +0.4 565,426 + -0.1 565,426 + +0.5 565,426 + -0.6 565,426 + +0.4 565,426 + -0.4 565,426 + +0.2 565,426 + +0.5 565,426 + -1.2 565,426 + +1.5 565,426 + -1.9 565,427 - -1.9 565,427 - +1.5 565,427 - -1.6 565,456 + -1.4 565,481 + -1.6 565,481 + -1.2 565,745 - Pf1N1B4_474 0.56 -1.4 565,745 - Pf1N1B4_474 0.56 -0.2 565,745 - Pf1N1B4_474 0.56 -1.9 565,745 - Pf1N1B4_474 0.56 -1.4 565,745 - Pf1N1B4_474 0.56 -2.2 565,749 - Pf1N1B4_474 0.57 +0.7 565,898 + Pf1N1B4_474 0.85 -1.2 565,898 + Pf1N1B4_474 0.85 -1.1 565,916 + Pf1N1B4_474 0.89 +0.9 565,916 + Pf1N1B4_474 0.89 -0.8 565,916 + Pf1N1B4_474 0.89 -1.1 565,916 + Pf1N1B4_474 0.89 -1.9 565,916 + Pf1N1B4_474 0.89 -0.9 565,917 - Pf1N1B4_474 0.89 -0.1 565,917 - Pf1N1B4_474 0.89 -0.6 565,917 - Pf1N1B4_474 0.89 +1.7 565,917 - Pf1N1B4_474 0.89 -1.1 565,955 - +0.5 566,009 + +0.6 566,009 + -0.6 566,024 + -1.6 566,024 + -0.4 566,025 - -0.9 566,025 - -1.6 566,025 - +0.7 566,061 + +0.5 566,061 + -1.4 566,061 + +2.3 566,061 + -1.6 566,061 + -0.9 566,061 + +0.2 566,061 + +1.3 566,061 + -0.4 566,061 + +0.2 566,061 + +0.4 566,061 + +0.5 566,061 + -2.1 566,061 + -1.2 566,061 + +1.2 566,061 + -0.4 566,061 + +0.6 566,061 + -0.3 566,062 - +0.4 566,062 - +1.4 566,062 - -1.4 566,062 - -0.1 566,062 - -1.2 566,062 - +0.8 566,062 - +0.1 566,062 - -0.6 566,062 - +1.2 566,062 - -2.1 566,062 - +0.7 566,062 - -0.4 566,065 + +0.2 566,065 + -1.4 566,418 + -1.6 566,557 + -1.4 566,557 + +0.9 566,557 + +0.9 566,557 + -0.3 566,557 + -1.4 566,557 + -0.3 566,557 + +0.9 566,557 + -1.8 566,557 + -0.1 566,557 + +0.1 566,558 - -1.1 566,558 - +0.4 566,558 - -1.1 566,558 - -0.8 566,558 - +1.5 566,558 - +0.1 566,558 - -1.4 566,626 + +0.2 566,626 + -1.1 566,626 + +1.4 566,626 + +1.9 566,626 + -1.5 566,626 + -0.1 566,626 + -0.1 566,626 + -1.4 566,626 + -2.4 566,627 - -1.1 566,627 - -0.3 566,627 - +0.5 566,627 - -1.1 566,627 - -1.6 566,627 - +1.4 566,627 - -1.9 566,627 - -1.2 566,627 - +1.4 566,695 + -0.1 566,695 + -0.3 566,695 + -0.5 566,695 + -0.1 566,695 + -0.6 566,695 + +0.6 566,695 + -0.7 566,695 + +0.4 566,695 + -0.3 566,695 + +1.7 566,695 + -1.8 566,695 + +0.5 566,695 + -0.8 566,696 - -3.3 566,696 - -0.1 566,696 - +0.5 566,696 - +0.4 566,696 - +1.8 566,696 - +0.2 566,696 - -0.1 566,696 - +1.5 566,764 + +0.9 566,764 + -2.8 566,764 + +0.5 566,764 + +0.3 566,764 + +0.4 566,764 + -0.4 566,764 + -0.4 566,764 + +0.9 566,764 + +0.9 566,764 + -0.1 566,765 - -0.4 566,765 - -0.1 566,765 - -1.6
Or see this region's nucleotide sequence