Experiment: Choline chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_312 and Pf1N1B4_313 are separated by 151 nucleotides Pf1N1B4_313 and Pf1N1B4_314 are separated by 200 nucleotides
Pf1N1B4_312 - Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-), at 365,145 to 367,796
_312
Pf1N1B4_313 - Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1), at 367,948 to 368,493
_313
Pf1N1B4_314 - Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1), at 368,694 to 370,751
_314
Position (kb) 367
368
369 Strain fitness (log2 ratio) -2
-1
0
1
2 at 367.216 kb on + strand, within Pf1N1B4_312 at 367.216 kb on + strand, within Pf1N1B4_312 at 367.216 kb on + strand, within Pf1N1B4_312 at 367.216 kb on + strand, within Pf1N1B4_312 at 367.216 kb on + strand, within Pf1N1B4_312 at 367.216 kb on + strand, within Pf1N1B4_312 at 367.217 kb on - strand, within Pf1N1B4_312 at 367.217 kb on - strand, within Pf1N1B4_312 at 367.282 kb on + strand, within Pf1N1B4_312 at 367.283 kb on - strand, within Pf1N1B4_312 at 367.283 kb on - strand, within Pf1N1B4_312 at 367.327 kb on - strand, within Pf1N1B4_312 at 367.690 kb on + strand at 367.691 kb on - strand at 367.691 kb on - strand at 367.725 kb on + strand at 367.725 kb on + strand at 367.725 kb on + strand at 367.813 kb on - strand at 367.895 kb on + strand at 367.895 kb on + strand at 367.895 kb on + strand at 367.895 kb on + strand at 367.895 kb on + strand at 367.895 kb on + strand at 367.895 kb on + strand at 367.895 kb on + strand at 367.895 kb on + strand at 367.895 kb on + strand at 367.895 kb on + strand at 367.895 kb on + strand at 367.895 kb on + strand at 367.895 kb on + strand at 367.895 kb on + strand at 367.895 kb on + strand at 367.896 kb on - strand at 367.896 kb on - strand at 367.896 kb on - strand at 367.949 kb on + strand at 367.968 kb on + strand at 368.046 kb on + strand, within Pf1N1B4_313 at 368.047 kb on - strand, within Pf1N1B4_313 at 368.047 kb on - strand, within Pf1N1B4_313 at 368.177 kb on - strand, within Pf1N1B4_313 at 368.323 kb on + strand, within Pf1N1B4_313 at 368.426 kb on + strand, within Pf1N1B4_313 at 368.479 kb on + strand at 368.479 kb on + strand at 368.480 kb on - strand at 368.506 kb on + strand at 368.506 kb on + strand at 368.506 kb on + strand at 368.507 kb on - strand at 368.698 kb on - strand at 368.774 kb on - strand at 368.774 kb on - strand at 368.948 kb on - strand, within Pf1N1B4_314 at 368.983 kb on + strand, within Pf1N1B4_314 at 368.983 kb on + strand, within Pf1N1B4_314 at 368.983 kb on + strand, within Pf1N1B4_314 at 368.983 kb on + strand, within Pf1N1B4_314 at 368.983 kb on + strand, within Pf1N1B4_314 at 368.984 kb on - strand, within Pf1N1B4_314 at 368.984 kb on - strand, within Pf1N1B4_314 at 369.040 kb on - strand, within Pf1N1B4_314
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 200 mM remove 367,216 + Pf1N1B4_312 0.78 +0.3 367,216 + Pf1N1B4_312 0.78 -1.5 367,216 + Pf1N1B4_312 0.78 +0.6 367,216 + Pf1N1B4_312 0.78 -1.1 367,216 + Pf1N1B4_312 0.78 +0.5 367,216 + Pf1N1B4_312 0.78 +0.2 367,217 - Pf1N1B4_312 0.78 -1.5 367,217 - Pf1N1B4_312 0.78 +0.1 367,282 + Pf1N1B4_312 0.81 -1.5 367,283 - Pf1N1B4_312 0.81 +0.1 367,283 - Pf1N1B4_312 0.81 +1.2 367,327 - Pf1N1B4_312 0.82 -1.1 367,690 + -0.9 367,691 - -0.1 367,691 - -0.6 367,725 + +0.3 367,725 + +0.7 367,725 + +1.2 367,813 - +0.1 367,895 + +0.6 367,895 + -0.7 367,895 + +0.3 367,895 + +0.1 367,895 + +0.1 367,895 + +0.3 367,895 + -0.7 367,895 + +0.9 367,895 + +1.5 367,895 + -1.1 367,895 + +1.9 367,895 + +0.1 367,895 + -0.9 367,895 + -1.1 367,895 + +1.6 367,895 + -0.5 367,896 - +1.5 367,896 - +0.1 367,896 - +1.3 367,949 + +0.9 367,968 + +0.9 368,046 + Pf1N1B4_313 0.18 -0.3 368,047 - Pf1N1B4_313 0.18 +0.3 368,047 - Pf1N1B4_313 0.18 -0.7 368,177 - Pf1N1B4_313 0.42 -1.1 368,323 + Pf1N1B4_313 0.69 -1.1 368,426 + Pf1N1B4_313 0.88 -0.7 368,479 + -0.7 368,479 + -0.5 368,480 - -0.7 368,506 + -0.7 368,506 + -0.4 368,506 + -1.9 368,507 - -0.1 368,698 - -1.1 368,774 - -0.1 368,774 - -0.5 368,948 - Pf1N1B4_314 0.12 -0.1 368,983 + Pf1N1B4_314 0.14 -0.1 368,983 + Pf1N1B4_314 0.14 -2.3 368,983 + Pf1N1B4_314 0.14 +0.7 368,983 + Pf1N1B4_314 0.14 -0.4 368,983 + Pf1N1B4_314 0.14 +2.1 368,984 - Pf1N1B4_314 0.14 -0.1 368,984 - Pf1N1B4_314 0.14 -1.9 369,040 - Pf1N1B4_314 0.17 +0.3
Or see this region's nucleotide sequence