Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2391

Experiment: Choline chloride 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 200 mM
2,707,800	+		Pf1N1B4_2389	0.56	+0.5
2,707,800	+		Pf1N1B4_2389	0.56	+0.9
2,707,800	+		Pf1N1B4_2389	0.56	+2.9
2,707,801	-		Pf1N1B4_2389	0.56	+2.1
2,707,801	-		Pf1N1B4_2389	0.56	+0.8
2,707,851	+		Pf1N1B4_2389	0.62	-1.5
2,707,851	+		Pf1N1B4_2389	0.62	-0.5
2,707,978	+		Pf1N1B4_2389	0.77	-0.2
2,707,989	+		Pf1N1B4_2389	0.78	+1.1
2,707,989	+		Pf1N1B4_2389	0.78	+0.3
2,707,989	+		Pf1N1B4_2389	0.78	-1.0
2,707,989	+		Pf1N1B4_2389	0.78	-1.2
2,707,989	+		Pf1N1B4_2389	0.78	-0.3
2,707,989	+		Pf1N1B4_2389	0.78	-0.8
2,707,989	+		Pf1N1B4_2389	0.78	-0.3
2,707,990	-		Pf1N1B4_2389	0.79	+1.1
2,708,088	+				+0.1
2,708,089	-				+1.3
2,708,122	+				+0.4
2,708,166	+				+0.8
2,708,194	+				-1.4
2,708,196	+				+0.9
2,708,264	+				-1.6
2,708,264	+				+0.5
2,708,264	+				-0.6
2,708,264	+				+1.0
2,708,264	+				-2.7
2,708,264	+				+0.1
2,708,264	+				-0.7
2,708,265	-				-1.5
2,708,274	+				-2.6
2,708,274	+				+2.0
2,708,274	+				+1.3
2,708,274	+				-0.3
2,708,274	+				+0.6
2,708,275	-				+1.0
2,708,309	-				-1.0
2,708,516	+		Pf1N1B4_2390	0.65	+0.3
2,708,516	+		Pf1N1B4_2390	0.65	-1.5
2,708,516	+		Pf1N1B4_2390	0.65	+1.6
2,708,517	-		Pf1N1B4_2390	0.65	+1.3
2,708,550	+		Pf1N1B4_2390	0.79	+0.3
2,708,550	+		Pf1N1B4_2390	0.79	-0.2
2,708,550	+		Pf1N1B4_2390	0.79	-0.0
2,708,551	-		Pf1N1B4_2390	0.79	+0.2
2,708,639	+				+0.2
2,708,639	+				-1.0
2,708,639	+				-0.7
2,708,639	+				-0.8
2,708,639	+				+1.3
2,708,639	+				-0.3
2,708,639	+				-1.0
2,708,639	+				-0.7
2,708,639	+				+0.3
2,708,640	-				-0.2
2,708,720	+				+0.3
2,708,720	+				+0.6
2,708,721	-				+0.4
2,708,721	-				+1.0
2,708,721	-				-1.9
2,708,721	-				-1.0
2,708,735	-				+0.3
2,708,735	-				-1.5
2,708,735	-				+1.0
2,708,883	+		Pf1N1B4_2391	0.14	-2.3
2,708,989	-		Pf1N1B4_2391	0.23	+1.0
2,708,990	+		Pf1N1B4_2391	0.23	+0.3
2,708,990	+		Pf1N1B4_2391	0.23	+1.8
2,708,991	-		Pf1N1B4_2391	0.23	-1.3
2,709,065	+		Pf1N1B4_2391	0.29	+0.3
2,709,065	+				-0.3
2,709,066	-				-0.3
2,709,066	-		Pf1N1B4_2391	0.30	-0.6
2,709,066	-		Pf1N1B4_2391	0.30	+0.8
2,709,425	+		Pf1N1B4_2391	0.60	+0.8
2,709,425	+		Pf1N1B4_2391	0.60	+0.6
2,709,425	+		Pf1N1B4_2391	0.60	+1.3
2,709,429	+		Pf1N1B4_2391	0.61	-0.7
2,709,429	+		Pf1N1B4_2391	0.61	-0.3
2,709,429	+		Pf1N1B4_2391	0.61	-0.5
2,709,429	+		Pf1N1B4_2391	0.61	-0.1
2,709,429	+		Pf1N1B4_2391	0.61	+0.5
2,709,429	+		Pf1N1B4_2391	0.61	+0.4
2,709,429	+		Pf1N1B4_2391	0.61	+0.7
2,709,429	+		Pf1N1B4_2391	0.61	+1.0
2,709,429	+		Pf1N1B4_2391	0.61	-0.3
2,709,429	+		Pf1N1B4_2391	0.61	+0.3
2,709,429	+				+1.3
2,709,429	+		Pf1N1B4_2391	0.61	+2.7
2,709,429	+		Pf1N1B4_2391	0.61	+0.3
2,709,429	+		Pf1N1B4_2391	0.61	+0.0
2,709,429	+		Pf1N1B4_2391	0.61	-0.0
2,709,429	+		Pf1N1B4_2391	0.61	+1.7
2,709,429	+		Pf1N1B4_2391	0.61	+2.0
2,709,429	+		Pf1N1B4_2391	0.61	+0.7
2,709,429	+		Pf1N1B4_2391	0.61	-0.3
2,709,429	+		Pf1N1B4_2391	0.61	+0.3
2,709,429	+		Pf1N1B4_2391	0.61	+0.3
2,709,430	+		Pf1N1B4_2391	0.61	-0.6
2,709,430	-		Pf1N1B4_2391	0.61	+0.9
2,709,430	-		Pf1N1B4_2391	0.61	+1.3
2,709,430	-		Pf1N1B4_2391	0.61	-1.5
2,709,430	-		Pf1N1B4_2391	0.61	+3.9
2,709,430	-		Pf1N1B4_2391	0.61	-0.2
2,709,430	-		Pf1N1B4_2391	0.61	+0.5
2,709,430	-		Pf1N1B4_2391	0.61	+1.0
2,709,430	-		Pf1N1B4_2391	0.61	+1.1
2,709,430	-		Pf1N1B4_2391	0.61	-1.0
2,709,430	-		Pf1N1B4_2391	0.61	+0.6
2,709,430	-		Pf1N1B4_2391	0.61	-0.0
2,709,430	-		Pf1N1B4_2391	0.61	-0.0
2,709,430	-		Pf1N1B4_2391	0.61	+0.5
2,709,430	-		Pf1N1B4_2391	0.61	+0.3
2,709,430	-		Pf1N1B4_2391	0.61	-0.9
2,709,470	+		Pf1N1B4_2391	0.64	-0.7
2,709,470	+		Pf1N1B4_2391	0.64	+2.1
2,709,470	+		Pf1N1B4_2391	0.64	+0.3
2,709,470	+		Pf1N1B4_2391	0.64	-0.9
2,709,471	-		Pf1N1B4_2391	0.64	+0.4
2,709,471	-		Pf1N1B4_2391	0.64	+0.5
2,709,471	-		Pf1N1B4_2391	0.64	+0.1
2,709,471	-		Pf1N1B4_2391	0.64	+1.0
2,709,527	+		Pf1N1B4_2391	0.69	+0.3
2,709,527	+		Pf1N1B4_2391	0.69	+0.9
2,709,527	+		Pf1N1B4_2391	0.69	+1.7
2,709,528	-		Pf1N1B4_2391	0.69	+1.6
2,709,528	-		Pf1N1B4_2391	0.69	+0.5
2,709,528	-		Pf1N1B4_2391	0.69	+1.8
2,709,528	-		Pf1N1B4_2391	0.69	-1.3
2,709,528	-		Pf1N1B4_2391	0.69	-0.3
2,709,528	-		Pf1N1B4_2391	0.69	-1.3
2,709,528	-		Pf1N1B4_2391	0.69	-0.5
2,709,528	-		Pf1N1B4_2391	0.69	-0.5
2,709,578	+		Pf1N1B4_2391	0.73	-0.4
2,709,579	-		Pf1N1B4_2391	0.73	+2.6
2,709,579	-		Pf1N1B4_2391	0.73	-0.1
2,709,687	+		Pf1N1B4_2391	0.83	-1.0
2,709,770	+		Pf1N1B4_2391	0.90	-0.2
2,709,770	+		Pf1N1B4_2391	0.90	+0.8
2,709,771	-		Pf1N1B4_2391	0.90	+1.4
2,709,896	+				-0.0
2,709,896	+				+0.6
2,709,897	-				-1.5
2,709,897	-				+1.9
2,709,897	-				+0.8
2,709,950	+				+1.9
2,709,950	+				-0.7
2,709,953	+				+0.3
2,709,953	+				+1.3
2,709,953	+				-2.3
2,709,953	+				-1.3
2,709,954	-				-1.3
2,709,954	-				-0.2
2,710,028	+				-1.0
2,710,029	-				-1.5
2,710,045	+				-0.8
2,710,045	+				+0.4
2,710,045	+				-0.2
2,710,045	+				+0.3
2,710,045	+				+0.3
2,710,045	+				-0.0
2,710,045	+				+0.1
2,710,045	+				-0.4
2,710,045	+				-1.9
2,710,045	+				+1.3
2,710,045	+				+0.3
2,710,045	+				-0.5
2,710,045	+				+0.3
2,710,046	-				-1.9
2,710,046	-				-0.4
2,710,046	-				-1.8
2,710,046	-				-0.0
2,710,175	+		Pf1N1B4_2392	0.34	+1.1
2,710,175	+		Pf1N1B4_2392	0.34	+0.3
2,710,175	+		Pf1N1B4_2392	0.34	-0.6
2,710,176	-		Pf1N1B4_2392	0.35	+1.6
2,710,386	+		Pf1N1B4_2392	0.81	+0.7
2,710,386	+		Pf1N1B4_2392	0.81	+0.5
2,710,387	-		Pf1N1B4_2392	0.82	+1.9
2,710,387	-				+0.3
2,710,513	+				+2.7
2,710,513	+				+0.6
2,710,513	+				+1.1
2,710,513	+				+1.3
2,710,513	+				-0.0
2,710,514	-				-0.8
2,710,514	-				-2.8
2,710,514	-				-0.7
2,710,517	+				-0.7
2,710,517	+				+0.4
2,710,517	+				-2.0