Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1035

Experiment: Choline chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1033 and Pf1N1B4_1034 overlap by 30 nucleotidesPf1N1B4_1034 and Pf1N1B4_1035 overlap by 20 nucleotidesPf1N1B4_1035 and Pf1N1B4_1036 are separated by 103 nucleotidesPf1N1B4_1036 and Pf1N1B4_1037 are separated by 54 nucleotides Pf1N1B4_1033 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 1,174,260 to 1,175,042 _1033 Pf1N1B4_1034 - hypothetical protein, at 1,175,013 to 1,175,279 _1034 Pf1N1B4_1035 - Hypothetical flavoprotein YqcA (clustered with tRNA pseudouridine synthase C), at 1,175,260 to 1,175,715 _1035 Pf1N1B4_1036 - Signal transduction histidine kinase, at 1,175,819 to 1,176,295 _1036 Pf1N1B4_1037 - FIG00953110: hypothetical protein, at 1,176,350 to 1,176,955 _1037 Position (kb) 1175 1176Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1174.261 kb on + strandat 1174.268 kb on + strandat 1174.268 kb on + strandat 1174.269 kb on - strandat 1174.269 kb on - strandat 1174.269 kb on - strandat 1174.432 kb on - strand, within Pf1N1B4_1033at 1174.460 kb on + strand, within Pf1N1B4_1033at 1174.460 kb on + strand, within Pf1N1B4_1033at 1174.460 kb on + strand, within Pf1N1B4_1033at 1174.460 kb on + strand, within Pf1N1B4_1033at 1174.461 kb on - strand, within Pf1N1B4_1033at 1174.461 kb on - strand, within Pf1N1B4_1033at 1174.461 kb on - strand, within Pf1N1B4_1033at 1174.461 kb on - strand, within Pf1N1B4_1033at 1174.597 kb on + strand, within Pf1N1B4_1033at 1174.598 kb on - strand, within Pf1N1B4_1033at 1174.598 kb on - strand, within Pf1N1B4_1033at 1174.606 kb on + strand, within Pf1N1B4_1033at 1174.606 kb on + strand, within Pf1N1B4_1033at 1174.607 kb on - strand, within Pf1N1B4_1033at 1174.707 kb on + strand, within Pf1N1B4_1033at 1174.708 kb on - strand, within Pf1N1B4_1033at 1174.708 kb on - strand, within Pf1N1B4_1033at 1174.708 kb on - strand, within Pf1N1B4_1033at 1174.708 kb on - strand, within Pf1N1B4_1033at 1174.756 kb on + strand, within Pf1N1B4_1033at 1174.778 kb on - strand, within Pf1N1B4_1033at 1174.778 kb on - strand, within Pf1N1B4_1033at 1175.095 kb on + strand, within Pf1N1B4_1034at 1175.105 kb on + strand, within Pf1N1B4_1034at 1175.105 kb on + strand, within Pf1N1B4_1034at 1175.106 kb on - strand, within Pf1N1B4_1034at 1175.106 kb on - strand, within Pf1N1B4_1034at 1175.106 kb on - strand, within Pf1N1B4_1034at 1175.126 kb on + strand, within Pf1N1B4_1034at 1175.126 kb on + strand, within Pf1N1B4_1034at 1175.126 kb on + strand, within Pf1N1B4_1034at 1175.126 kb on + strand, within Pf1N1B4_1034at 1175.126 kb on + strand, within Pf1N1B4_1034at 1175.126 kb on + strand, within Pf1N1B4_1034at 1175.126 kb on + strand, within Pf1N1B4_1034at 1175.127 kb on - strand, within Pf1N1B4_1034at 1175.127 kb on - strand, within Pf1N1B4_1034at 1175.127 kb on - strandat 1175.504 kb on + strand, within Pf1N1B4_1035at 1175.504 kb on + strand, within Pf1N1B4_1035at 1175.504 kb on + strandat 1175.504 kb on + strand, within Pf1N1B4_1035at 1175.504 kb on + strand, within Pf1N1B4_1035at 1175.504 kb on + strand, within Pf1N1B4_1035at 1175.505 kb on - strand, within Pf1N1B4_1035at 1175.505 kb on - strand, within Pf1N1B4_1035at 1175.505 kb on - strand, within Pf1N1B4_1035at 1175.505 kb on - strand, within Pf1N1B4_1035at 1175.685 kb on - strandat 1175.685 kb on - strandat 1175.743 kb on + strandat 1175.751 kb on - strandat 1175.779 kb on + strandat 1175.792 kb on - strandat 1175.915 kb on + strand, within Pf1N1B4_1036at 1175.916 kb on - strand, within Pf1N1B4_1036at 1175.916 kb on - strand, within Pf1N1B4_1036at 1175.916 kb on - strand, within Pf1N1B4_1036at 1175.920 kb on - strand, within Pf1N1B4_1036at 1175.949 kb on - strand, within Pf1N1B4_1036at 1175.950 kb on + strand, within Pf1N1B4_1036at 1175.950 kb on + strand, within Pf1N1B4_1036at 1175.950 kb on + strand, within Pf1N1B4_1036at 1175.950 kb on + strand, within Pf1N1B4_1036at 1175.951 kb on - strand, within Pf1N1B4_1036at 1175.951 kb on - strand, within Pf1N1B4_1036at 1175.951 kb on - strand, within Pf1N1B4_1036at 1175.951 kb on - strandat 1175.951 kb on - strand, within Pf1N1B4_1036at 1176.152 kb on + strand, within Pf1N1B4_1036at 1176.152 kb on + strand, within Pf1N1B4_1036at 1176.153 kb on - strand, within Pf1N1B4_1036at 1176.153 kb on - strand, within Pf1N1B4_1036at 1176.153 kb on - strand, within Pf1N1B4_1036at 1176.153 kb on - strand, within Pf1N1B4_1036at 1176.153 kb on - strand, within Pf1N1B4_1036at 1176.153 kb on - strand, within Pf1N1B4_1036at 1176.153 kb on - strand, within Pf1N1B4_1036at 1176.305 kb on - strandat 1176.544 kb on - strand, within Pf1N1B4_1037at 1176.544 kb on - strand, within Pf1N1B4_1037at 1176.591 kb on + strand, within Pf1N1B4_1037at 1176.591 kb on + strand, within Pf1N1B4_1037at 1176.592 kb on - strand, within Pf1N1B4_1037at 1176.592 kb on - strand, within Pf1N1B4_1037at 1176.592 kb on - strand, within Pf1N1B4_1037at 1176.592 kb on - strand, within Pf1N1B4_1037at 1176.614 kb on + strand, within Pf1N1B4_1037at 1176.614 kb on + strand, within Pf1N1B4_1037at 1176.615 kb on - strandat 1176.615 kb on - strand, within Pf1N1B4_1037at 1176.615 kb on - strand, within Pf1N1B4_1037at 1176.615 kb on - strand, within Pf1N1B4_1037at 1176.615 kb on - strand, within Pf1N1B4_1037at 1176.615 kb on - strand, within Pf1N1B4_1037at 1176.615 kb on - strand, within Pf1N1B4_1037at 1176.615 kb on - strand, within Pf1N1B4_1037

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 200 mM
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1,174,261 + +1.5
1,174,268 + -1.8
1,174,268 + +1.6
1,174,269 - +0.4
1,174,269 - +0.8
1,174,269 - +0.4
1,174,432 - Pf1N1B4_1033 0.22 -1.0
1,174,460 + Pf1N1B4_1033 0.26 +0.4
1,174,460 + Pf1N1B4_1033 0.26 +2.2
1,174,460 + Pf1N1B4_1033 0.26 +0.8
1,174,460 + Pf1N1B4_1033 0.26 -1.4
1,174,461 - Pf1N1B4_1033 0.26 -1.0
1,174,461 - Pf1N1B4_1033 0.26 -0.4
1,174,461 - Pf1N1B4_1033 0.26 -0.4
1,174,461 - Pf1N1B4_1033 0.26 -0.8
1,174,597 + Pf1N1B4_1033 0.43 +0.8
1,174,598 - Pf1N1B4_1033 0.43 +1.0
1,174,598 - Pf1N1B4_1033 0.43 +1.9
1,174,606 + Pf1N1B4_1033 0.44 +0.1
1,174,606 + Pf1N1B4_1033 0.44 +0.0
1,174,607 - Pf1N1B4_1033 0.44 -1.1
1,174,707 + Pf1N1B4_1033 0.57 +1.5
1,174,708 - Pf1N1B4_1033 0.57 +0.3
1,174,708 - Pf1N1B4_1033 0.57 -1.1
1,174,708 - Pf1N1B4_1033 0.57 +0.2
1,174,708 - Pf1N1B4_1033 0.57 -0.8
1,174,756 + Pf1N1B4_1033 0.63 +0.8
1,174,778 - Pf1N1B4_1033 0.66 +0.9
1,174,778 - Pf1N1B4_1033 0.66 +3.0
1,175,095 + Pf1N1B4_1034 0.31 -0.2
1,175,105 + Pf1N1B4_1034 0.34 +0.1
1,175,105 + Pf1N1B4_1034 0.34 +1.6
1,175,106 - Pf1N1B4_1034 0.35 +1.2
1,175,106 - Pf1N1B4_1034 0.35 -0.5
1,175,106 - Pf1N1B4_1034 0.35 -2.3
1,175,126 + Pf1N1B4_1034 0.42 -2.1
1,175,126 + Pf1N1B4_1034 0.42 +1.2
1,175,126 + Pf1N1B4_1034 0.42 -1.6
1,175,126 + Pf1N1B4_1034 0.42 -1.1
1,175,126 + Pf1N1B4_1034 0.42 +2.2
1,175,126 + Pf1N1B4_1034 0.42 -2.5
1,175,126 + Pf1N1B4_1034 0.42 +0.2
1,175,127 - Pf1N1B4_1034 0.43 +1.2
1,175,127 - Pf1N1B4_1034 0.43 -0.4
1,175,127 - -0.8
1,175,504 + Pf1N1B4_1035 0.54 +0.9
1,175,504 + Pf1N1B4_1035 0.54 +0.5
1,175,504 + +1.2
1,175,504 + Pf1N1B4_1035 0.54 +0.9
1,175,504 + Pf1N1B4_1035 0.54 +2.0
1,175,504 + Pf1N1B4_1035 0.54 +3.2
1,175,505 - Pf1N1B4_1035 0.54 -1.0
1,175,505 - Pf1N1B4_1035 0.54 +0.7
1,175,505 - Pf1N1B4_1035 0.54 +1.6
1,175,505 - Pf1N1B4_1035 0.54 -0.4
1,175,685 - -2.1
1,175,685 - +1.0
1,175,743 + +1.3
1,175,751 - -0.1
1,175,779 + -0.6
1,175,792 - -2.0
1,175,915 + Pf1N1B4_1036 0.20 -0.8
1,175,916 - Pf1N1B4_1036 0.20 -0.2
1,175,916 - Pf1N1B4_1036 0.20 -0.4
1,175,916 - Pf1N1B4_1036 0.20 +0.5
1,175,920 - Pf1N1B4_1036 0.21 +0.2
1,175,949 - Pf1N1B4_1036 0.27 -0.0
1,175,950 + Pf1N1B4_1036 0.27 -0.5
1,175,950 + Pf1N1B4_1036 0.27 -0.8
1,175,950 + Pf1N1B4_1036 0.27 +0.9
1,175,950 + Pf1N1B4_1036 0.27 +0.6
1,175,951 - Pf1N1B4_1036 0.28 -1.6
1,175,951 - Pf1N1B4_1036 0.28 +0.5
1,175,951 - Pf1N1B4_1036 0.28 -0.8
1,175,951 - +1.2
1,175,951 - Pf1N1B4_1036 0.28 +1.0
1,176,152 + Pf1N1B4_1036 0.70 +0.1
1,176,152 + Pf1N1B4_1036 0.70 -1.1
1,176,153 - Pf1N1B4_1036 0.70 +0.6
1,176,153 - Pf1N1B4_1036 0.70 -1.1
1,176,153 - Pf1N1B4_1036 0.70 -0.1
1,176,153 - Pf1N1B4_1036 0.70 -0.9
1,176,153 - Pf1N1B4_1036 0.70 -0.1
1,176,153 - Pf1N1B4_1036 0.70 +0.1
1,176,153 - Pf1N1B4_1036 0.70 +1.2
1,176,305 - -0.8
1,176,544 - Pf1N1B4_1037 0.32 -0.3
1,176,544 - Pf1N1B4_1037 0.32 -0.8
1,176,591 + Pf1N1B4_1037 0.40 -0.6
1,176,591 + Pf1N1B4_1037 0.40 -1.6
1,176,592 - Pf1N1B4_1037 0.40 -0.9
1,176,592 - Pf1N1B4_1037 0.40 +1.0
1,176,592 - Pf1N1B4_1037 0.40 +0.2
1,176,592 - Pf1N1B4_1037 0.40 +0.5
1,176,614 + Pf1N1B4_1037 0.44 -2.0
1,176,614 + Pf1N1B4_1037 0.44 -2.8
1,176,615 - +2.8
1,176,615 - Pf1N1B4_1037 0.44 -1.1
1,176,615 - Pf1N1B4_1037 0.44 -0.4
1,176,615 - Pf1N1B4_1037 0.44 -0.7
1,176,615 - Pf1N1B4_1037 0.44 -1.4
1,176,615 - Pf1N1B4_1037 0.44 +0.4
1,176,615 - Pf1N1B4_1037 0.44 +0.2
1,176,615 - Pf1N1B4_1037 0.44 +0.1

Or see this region's nucleotide sequence