Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20560

Experiment: no_plant_rhizosphere sample 2; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no_plant_rhizosphere sample 2; outgrowth in LB
998,319	+		ABZR87_RS20555	0.27	-1.0
998,340	-		ABZR87_RS20555	0.31	+0.7
998,373	-		ABZR87_RS20555	0.37	+0.8
998,373	-		ABZR87_RS20555	0.37	-0.8
998,373	-		ABZR87_RS20555	0.37	+0.7
998,612	+		ABZR87_RS20555	0.82	-2.3
998,612	+		ABZR87_RS20555	0.82	-2.5
998,613	-		ABZR87_RS20555	0.82	-3.0
998,613	-		ABZR87_RS20555	0.82	-3.3
998,628	+		ABZR87_RS20555	0.85	-3.1
998,628	+		ABZR87_RS20555	0.85	-2.9
998,686	+				-2.6
998,686	+				-1.6
998,686	+				+0.9
998,686	+				-2.2
998,686	+				-1.9
998,687	-				-2.1
998,687	-				-3.0
998,814	+				-2.5
998,814	+				-1.0
998,814	+				-0.3
998,814	+				-2.1
998,815	-				+1.3
998,815	-				+0.9
998,815	-				+0.1
998,815	-				+0.6
998,845	+				-0.3
998,845	+				-1.6
998,845	+				-0.4
998,845	+				+0.6
998,845	+				-2.8
998,845	+				-2.8
998,846	-				-0.1
998,846	-				+0.2
998,846	-				-1.0
998,846	-				-1.3
998,846	-				+0.1
998,897	+				-1.7
998,898	-				+1.2
998,898	-				+0.3
998,904	+				-2.2
998,904	+				+0.1
998,904	+				-3.0
998,904	+				-2.9
998,904	+				-1.4
998,904	+				-1.3
998,905	-				+0.2
998,929	+				-1.3
998,930	-				-0.8
998,969	-				-1.4
998,969	-				+0.4
998,969	-				+2.0
998,969	-				+0.1
999,004	+				-0.3
999,004	+				-0.4
999,004	+				+0.2
999,004	+				-0.4
999,004	+				+1.7
999,004	+				+0.5
999,004	+				-1.5
999,004	+				-2.2
999,005	-				-1.5
999,005	-				+1.4
999,005	-				+0.8
999,005	-				+0.3
999,005	-				-1.1
999,099	+				-0.4
999,254	+				+0.3
999,255	-				+1.5
999,347	-				+3.9
999,347	-				+1.5
999,563	+		ABZR87_RS20560	0.10	+0.8
999,564	-		ABZR87_RS20560	0.10	-0.2
999,564	-		ABZR87_RS20560	0.10	-0.2
999,628	+		ABZR87_RS20560	0.12	-0.9
1,000,087	+		ABZR87_RS20560	0.26	+0.2
1,000,087	+		ABZR87_RS20560	0.26	-0.8
1,000,087	+		ABZR87_RS20560	0.26	+1.3
1,000,087	+		ABZR87_RS20560	0.26	-0.2
1,000,087	+		ABZR87_RS20560	0.26	+2.0
1,000,088	-		ABZR87_RS20560	0.26	+0.2
1,000,088	-		ABZR87_RS20560	0.26	+1.1
1,000,088	-		ABZR87_RS20560	0.26	-0.3
1,000,088	-		ABZR87_RS20560	0.26	-2.2
1,000,088	-		ABZR87_RS20560	0.26	-0.8
1,000,088	-		ABZR87_RS20560	0.26	+1.7
1,000,088	-		ABZR87_RS20560	0.26	-1.7
1,000,166	-		ABZR87_RS20560	0.29	-0.0
1,000,166	-		ABZR87_RS20560	0.29	-1.5
1,000,166	-		ABZR87_RS20560	0.29	-0.1
1,000,166	-		ABZR87_RS20560	0.29	+0.2
1,000,166	-		ABZR87_RS20560	0.29	-0.4
1,000,210	+		ABZR87_RS20560	0.30	-0.3
1,000,211	-		ABZR87_RS20560	0.30	+1.1
1,000,265	-		ABZR87_RS20560	0.32	-0.3
1,000,474	+		ABZR87_RS20560	0.38	+0.2
1,000,475	-		ABZR87_RS20560	0.38	-0.8
1,000,525	+		ABZR87_RS20560	0.40	-1.2
1,000,526	-		ABZR87_RS20560	0.40	+1.9
1,000,572	+		ABZR87_RS20560	0.41	-0.9
1,000,572	+		ABZR87_RS20560	0.41	+0.1
1,000,591	+		ABZR87_RS20560	0.42	+1.0
1,000,591	+		ABZR87_RS20560	0.42	+0.2
1,000,591	+		ABZR87_RS20560	0.42	+1.0
1,000,592	-		ABZR87_RS20560	0.42	+0.6
1,000,592	-		ABZR87_RS20560	0.42	+0.6
1,000,594	+		ABZR87_RS20560	0.42	+0.1
1,000,595	-		ABZR87_RS20560	0.42	-1.5
1,000,687	+		ABZR87_RS20560	0.45	-1.4
1,000,688	-		ABZR87_RS20560	0.45	-0.7
1,000,688	-		ABZR87_RS20560	0.45	-1.3
1,000,744	+		ABZR87_RS20560	0.47	-0.3
1,001,173	+		ABZR87_RS20560	0.60	+1.5
1,001,173	+		ABZR87_RS20560	0.60	+1.1
1,001,173	+		ABZR87_RS20560	0.60	+0.9
1,001,174	-		ABZR87_RS20560	0.60	-0.6
1,001,216	-		ABZR87_RS20560	0.61	-0.9
1,001,225	-		ABZR87_RS20560	0.61	+0.9
1,001,230	+		ABZR87_RS20560	0.62	-0.1
1,001,230	+		ABZR87_RS20560	0.62	-1.0
1,001,230	+		ABZR87_RS20560	0.62	+1.2
1,001,230	+		ABZR87_RS20560	0.62	-0.7
1,001,230	+		ABZR87_RS20560	0.62	-0.7
1,001,230	+		ABZR87_RS20560	0.62	+0.2
1,001,231	-		ABZR87_RS20560	0.62	+0.7
1,001,365	+		ABZR87_RS20560	0.66	+0.9
1,001,365	+		ABZR87_RS20560	0.66	-0.6
1,001,365	+		ABZR87_RS20560	0.66	+0.3
1,001,366	-		ABZR87_RS20560	0.66	-0.8
1,001,443	+		ABZR87_RS20560	0.68	+2.4
1,001,443	+		ABZR87_RS20560	0.68	+0.2
1,001,443	+		ABZR87_RS20560	0.68	-0.7
1,001,444	-		ABZR87_RS20560	0.68	-1.6
1,001,444	-		ABZR87_RS20560	0.68	+1.1
1,001,444	-		ABZR87_RS20560	0.68	+0.6
1,001,467	+		ABZR87_RS20560	0.69	+0.3
1,001,468	-		ABZR87_RS20560	0.69	+0.1
1,001,578	+		ABZR87_RS20560	0.72	+0.2
1,001,578	+		ABZR87_RS20560	0.72	-0.6
1,001,579	-		ABZR87_RS20560	0.72	-1.2
1,001,579	-		ABZR87_RS20560	0.72	+0.6
1,001,579	-		ABZR87_RS20560	0.72	-0.8
1,001,621	-		ABZR87_RS20560	0.74	+1.7
1,001,626	+		ABZR87_RS20560	0.74	+0.2
1,001,710	+		ABZR87_RS20560	0.76	+0.4
1,001,711	-		ABZR87_RS20560	0.76	-2.6
1,001,711	-		ABZR87_RS20560	0.76	+0.3
1,001,716	+		ABZR87_RS20560	0.77	+0.7
1,001,716	+		ABZR87_RS20560	0.77	-0.0
1,001,716	+		ABZR87_RS20560	0.77	+0.6
1,001,717	-		ABZR87_RS20560	0.77	+0.9
1,001,717	-		ABZR87_RS20560	0.77	+1.0
1,001,717	-		ABZR87_RS20560	0.77	+0.9
1,002,028	+		ABZR87_RS20560	0.86	-0.0
1,002,029	-		ABZR87_RS20560	0.86	-0.1
1,002,122	-		ABZR87_RS20560	0.89	-0.5
1,002,155	+				+0.8
1,002,155	+				+0.4
1,002,156	-				+0.0
1,002,156	-				-0.7
1,002,236	+				+0.3
1,002,246	-				+1.9
1,002,277	+				-0.9
1,002,277	+				-0.5
1,002,278	-				-1.5
1,002,278	-				+1.5
1,002,278	-				-1.4
1,002,278	-				-1.3
1,002,315	+				+3.3
1,002,315	+				-2.3
1,002,355	+				-0.2
1,002,355	+				-1.2
1,002,355	+				+0.8
1,002,355	+				-1.3
1,002,356	-				+0.3
1,002,356	-				+0.7
1,002,356	-				-0.1
1,002,356	-				+1.3
1,002,382	+				+1.8
1,002,383	-				-0.3
1,002,440	-				+0.3
1,002,440	-				+0.5
1,002,440	-				-0.9
1,002,492	+				+1.2
1,002,505	+				-1.8
1,002,506	-				-0.3
1,002,563	-				-1.1
1,002,563	-				-0.1
1,002,604	+				-0.3
1,002,604	+				-0.7
1,002,604	+				+1.1
1,002,604	+				+1.4
1,002,604	+				-0.4
1,002,605	-				-2.9
1,002,605	-				-1.0
1,002,647	+		ABZR87_RS20565	0.10	-0.3
1,002,648	-		ABZR87_RS20565	0.10	-0.9
1,002,648	-		ABZR87_RS20565	0.10	+0.9
1,002,648	-		ABZR87_RS20565	0.10	+0.1
1,002,648	-		ABZR87_RS20565	0.10	-0.1
1,002,685	+		ABZR87_RS20565	0.13	+0.9
1,002,688	+		ABZR87_RS20565	0.13	+1.6
1,002,689	-		ABZR87_RS20565	0.13	-0.3
1,002,695	-		ABZR87_RS20565	0.13	+0.5
1,002,882	+		ABZR87_RS20565	0.25	-1.4
1,002,882	+		ABZR87_RS20565	0.25	-1.2
1,002,882	+		ABZR87_RS20565	0.25	+0.3
1,002,882	+		ABZR87_RS20565	0.25	+3.9
1,002,883	-		ABZR87_RS20565	0.25	-0.3
1,002,883	-		ABZR87_RS20565	0.25	+0.3
1,002,992	+		ABZR87_RS20565	0.32	+1.1
1,003,187	-		ABZR87_RS20565	0.44	+1.4
1,003,334	+		ABZR87_RS20565	0.54	-0.1
1,003,334	+		ABZR87_RS20565	0.54	+0.5
1,003,357	+		ABZR87_RS20565	0.55	-2.5
1,003,358	-		ABZR87_RS20565	0.55	-2.4
1,003,373	+		ABZR87_RS20565	0.56	+0.2
1,003,373	+		ABZR87_RS20565	0.56	-1.7
1,003,373	+		ABZR87_RS20565	0.56	-0.2
1,003,378	-		ABZR87_RS20565	0.57	-1.0
1,003,412	+		ABZR87_RS20565	0.59	+0.7
1,003,413	-		ABZR87_RS20565	0.59	-1.5
1,003,413	-		ABZR87_RS20565	0.59	-0.1
1,003,419	+		ABZR87_RS20565	0.59	-2.0
1,003,419	+		ABZR87_RS20565	0.59	-0.4