Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20495 and ABZR87_RS20500 are separated by 278 nucleotides ABZR87_RS20500 and ABZR87_RS20505 are separated by 79 nucleotides ABZR87_RS20505 and ABZR87_RS20510 overlap by 8 nucleotides ABZR87_RS20510 and ABZR87_RS20515 are separated by 199 nucleotides ABZR87_RS20515 and ABZR87_RS20520 are separated by 32 nucleotides
ABZR87_RS20495: ABZR87_RS20495 - hypothetical protein, at 988,497 to 989,012
_RS20495
ABZR87_RS20500: ABZR87_RS20500 - hypothetical protein, at 989,291 to 989,533
_RS20500
ABZR87_RS20505: ABZR87_RS20505 - hypothetical protein, at 989,613 to 989,813
_RS20505
ABZR87_RS20510: ABZR87_RS20510 - LysR family transcriptional regulator, at 989,806 to 989,880
_RS20510
ABZR87_RS20515: ABZR87_RS20515 - ferredoxin FdxA, at 990,080 to 990,418
_RS20515
ABZR87_RS20520: ABZR87_RS20520 - crotonase/enoyl-CoA hydratase family protein, at 990,451 to 991,272
_RS20520
Position (kb) 989
990 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 989.051 kb on + strand at 989.051 kb on + strand at 989.051 kb on + strand at 989.052 kb on - strand at 989.052 kb on - strand at 989.101 kb on + strand at 989.101 kb on + strand at 989.134 kb on + strand at 989.134 kb on + strand at 989.134 kb on + strand at 989.165 kb on + strand at 989.165 kb on + strand at 989.166 kb on - strand at 989.166 kb on - strand at 989.166 kb on - strand at 989.203 kb on + strand at 989.204 kb on - strand at 989.210 kb on + strand at 989.210 kb on + strand at 989.211 kb on - strand at 989.250 kb on - strand at 989.287 kb on - strand at 989.378 kb on + strand, within ABZR87_RS20500 at 989.531 kb on + strand at 989.531 kb on + strand at 989.532 kb on - strand at 989.541 kb on + strand at 989.541 kb on + strand at 989.541 kb on + strand at 989.541 kb on + strand at 989.545 kb on + strand at 989.545 kb on + strand at 989.545 kb on + strand at 989.546 kb on - strand at 989.546 kb on - strand at 989.546 kb on - strand at 989.552 kb on + strand at 989.552 kb on + strand at 989.552 kb on + strand at 989.552 kb on + strand at 989.552 kb on + strand at 989.609 kb on + strand at 989.609 kb on + strand at 989.610 kb on - strand at 989.610 kb on - strand at 989.746 kb on + strand, within ABZR87_RS20505 at 989.747 kb on - strand, within ABZR87_RS20505 at 989.747 kb on - strand, within ABZR87_RS20505 at 989.873 kb on - strand at 989.901 kb on + strand at 989.902 kb on - strand at 989.902 kb on - strand at 989.902 kb on - strand at 989.915 kb on - strand at 989.921 kb on + strand at 989.922 kb on - strand at 989.922 kb on - strand at 989.922 kb on - strand at 989.927 kb on + strand at 989.927 kb on + strand at 989.927 kb on + strand at 989.928 kb on - strand at 989.928 kb on - strand at 989.930 kb on - strand at 990.035 kb on - strand at 990.075 kb on + strand at 990.075 kb on + strand at 990.075 kb on + strand at 990.079 kb on + strand at 990.079 kb on + strand at 990.079 kb on + strand at 990.079 kb on + strand at 990.079 kb on + strand at 990.080 kb on - strand at 990.080 kb on - strand at 990.080 kb on - strand at 990.080 kb on - strand at 990.080 kb on - strand at 990.086 kb on + strand at 990.086 kb on + strand at 990.086 kb on + strand at 990.086 kb on + strand at 990.086 kb on + strand at 990.086 kb on + strand at 990.086 kb on + strand at 990.086 kb on + strand at 990.086 kb on + strand at 990.087 kb on - strand at 990.087 kb on - strand at 990.087 kb on - strand at 990.090 kb on + strand at 990.090 kb on + strand at 990.090 kb on + strand at 990.091 kb on - strand at 990.091 kb on - strand at 990.091 kb on - strand at 990.091 kb on - strand at 990.119 kb on + strand, within ABZR87_RS20515 at 990.120 kb on - strand, within ABZR87_RS20515 at 990.120 kb on - strand, within ABZR87_RS20515 at 990.245 kb on + strand, within ABZR87_RS20515 at 990.245 kb on + strand, within ABZR87_RS20515 at 990.645 kb on + strand, within ABZR87_RS20520 at 990.745 kb on + strand, within ABZR87_RS20520 at 990.746 kb on - strand, within ABZR87_RS20520 at 990.746 kb on - strand, within ABZR87_RS20520 at 990.746 kb on - strand, within ABZR87_RS20520 at 990.809 kb on - strand, within ABZR87_RS20520 at 990.850 kb on + strand, within ABZR87_RS20520 at 990.850 kb on + strand, within ABZR87_RS20520 at 990.851 kb on - strand, within ABZR87_RS20520
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 989,051 + -0.5 989,051 + -0.8 989,051 + -0.6 989,052 - +1.4 989,052 - +0.6 989,101 + +0.1 989,101 + +0.7 989,134 + -0.5 989,134 + -1.5 989,134 + -1.0 989,165 + +0.0 989,165 + +1.5 989,166 - -0.5 989,166 - +0.3 989,166 - +0.6 989,203 + -1.9 989,204 - -0.4 989,210 + +0.2 989,210 + -0.4 989,211 - -0.1 989,250 - -2.1 989,287 - +0.6 989,378 + ABZR87_RS20500 0.36 +0.9 989,531 + +1.2 989,531 + +1.8 989,532 - +0.1 989,541 + +0.8 989,541 + +0.6 989,541 + -0.1 989,541 + +1.0 989,545 + -0.2 989,545 + +0.2 989,545 + +0.9 989,546 - +1.1 989,546 - +0.6 989,546 - +0.1 989,552 + -0.0 989,552 + +0.3 989,552 + +0.1 989,552 + +0.3 989,552 + -0.8 989,609 + +0.4 989,609 + +0.2 989,610 - -3.0 989,610 - +0.9 989,746 + ABZR87_RS20505 0.66 -0.3 989,747 - ABZR87_RS20505 0.67 +0.8 989,747 - ABZR87_RS20505 0.67 +0.3 989,873 - -2.9 989,901 + +1.2 989,902 - +0.1 989,902 - +2.4 989,902 - +2.5 989,915 - +1.0 989,921 + +0.5 989,922 - -1.8 989,922 - +0.8 989,922 - -1.2 989,927 + +0.4 989,927 + +0.5 989,927 + +0.3 989,928 - +0.8 989,928 - -0.6 989,930 - -0.5 990,035 - -0.7 990,075 + -3.0 990,075 + +1.3 990,075 + -1.3 990,079 + +0.7 990,079 + -0.8 990,079 + -1.1 990,079 + +0.1 990,079 + -0.9 990,080 - -0.7 990,080 - -2.2 990,080 - +1.7 990,080 - -0.6 990,080 - +0.6 990,086 + -0.5 990,086 + +0.9 990,086 + -0.8 990,086 + -1.0 990,086 + -0.7 990,086 + -0.9 990,086 + -1.3 990,086 + +0.4 990,086 + -1.0 990,087 - +2.1 990,087 - -0.9 990,087 - -0.3 990,090 + +0.6 990,090 + -0.8 990,090 + -0.0 990,091 - +0.3 990,091 - +2.2 990,091 - -0.5 990,091 - -0.6 990,119 + ABZR87_RS20515 0.12 -0.5 990,120 - ABZR87_RS20515 0.12 -0.8 990,120 - ABZR87_RS20515 0.12 -0.6 990,245 + ABZR87_RS20515 0.49 -1.9 990,245 + ABZR87_RS20515 0.49 -0.2 990,645 + ABZR87_RS20520 0.24 -0.1 990,745 + ABZR87_RS20520 0.36 -1.9 990,746 - ABZR87_RS20520 0.36 +0.3 990,746 - ABZR87_RS20520 0.36 +0.5 990,746 - ABZR87_RS20520 0.36 +0.3 990,809 - ABZR87_RS20520 0.44 -1.5 990,850 + ABZR87_RS20520 0.49 -0.0 990,850 + ABZR87_RS20520 0.49 +2.8 990,851 - ABZR87_RS20520 0.49 -0.1
Or see this region's nucleotide sequence