Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20460 and ABZR87_RS20465 are separated by 55 nucleotides ABZR87_RS20465 and ABZR87_RS20470 are separated by 56 nucleotides ABZR87_RS20470 and ABZR87_RS20475 are separated by 7 nucleotides
ABZR87_RS20460: ABZR87_RS20460 - putative 2-aminoethylphosphonate ABC transporter substrate-binding protein, at 977,673 to 978,698
_RS20460
ABZR87_RS20465: ABZR87_RS20465 - phosphonoacetaldehyde hydrolase, at 978,754 to 979,632
_RS20465
ABZR87_RS20470: ABZR87_RS20470 - putative 2-aminoethylphosphonate ABC transporter permease subunit, at 979,689 to 981,452
_RS20470
ABZR87_RS20475: ABZR87_RS20475 - putative 2-aminoethylphosphonate ABC transporter ATP-binding protein, at 981,460 to 982,569
_RS20475
Position (kb) 979
980
981
982 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 978.842 kb on + strand, within ABZR87_RS20465 at 978.843 kb on - strand, within ABZR87_RS20465 at 979.027 kb on + strand, within ABZR87_RS20465 at 979.027 kb on + strand, within ABZR87_RS20465 at 979.028 kb on - strand, within ABZR87_RS20465 at 979.203 kb on + strand, within ABZR87_RS20465 at 979.203 kb on + strand, within ABZR87_RS20465 at 979.203 kb on + strand, within ABZR87_RS20465 at 979.313 kb on + strand, within ABZR87_RS20465 at 979.313 kb on + strand, within ABZR87_RS20465 at 979.313 kb on + strand, within ABZR87_RS20465 at 979.313 kb on + strand, within ABZR87_RS20465 at 979.313 kb on + strand, within ABZR87_RS20465 at 979.313 kb on + strand, within ABZR87_RS20465 at 979.313 kb on + strand, within ABZR87_RS20465 at 979.314 kb on - strand, within ABZR87_RS20465 at 979.314 kb on - strand, within ABZR87_RS20465 at 979.668 kb on + strand at 979.739 kb on + strand at 979.739 kb on + strand at 979.762 kb on - strand at 979.874 kb on - strand, within ABZR87_RS20470 at 979.874 kb on - strand, within ABZR87_RS20470 at 979.921 kb on + strand, within ABZR87_RS20470 at 979.921 kb on + strand, within ABZR87_RS20470 at 979.921 kb on + strand, within ABZR87_RS20470 at 979.921 kb on + strand, within ABZR87_RS20470 at 979.922 kb on - strand, within ABZR87_RS20470 at 979.922 kb on - strand, within ABZR87_RS20470 at 979.975 kb on + strand, within ABZR87_RS20470 at 979.976 kb on - strand, within ABZR87_RS20470 at 979.976 kb on - strand, within ABZR87_RS20470 at 980.120 kb on - strand, within ABZR87_RS20470 at 980.164 kb on + strand, within ABZR87_RS20470 at 980.165 kb on - strand, within ABZR87_RS20470 at 980.289 kb on - strand, within ABZR87_RS20470 at 980.386 kb on + strand, within ABZR87_RS20470 at 980.386 kb on + strand, within ABZR87_RS20470 at 980.386 kb on + strand, within ABZR87_RS20470 at 980.386 kb on + strand, within ABZR87_RS20470 at 980.386 kb on + strand, within ABZR87_RS20470 at 980.387 kb on - strand, within ABZR87_RS20470 at 980.387 kb on - strand, within ABZR87_RS20470 at 980.387 kb on - strand, within ABZR87_RS20470 at 980.387 kb on - strand, within ABZR87_RS20470 at 980.387 kb on - strand, within ABZR87_RS20470 at 980.413 kb on + strand, within ABZR87_RS20470 at 980.414 kb on - strand, within ABZR87_RS20470 at 980.443 kb on - strand, within ABZR87_RS20470 at 980.536 kb on + strand, within ABZR87_RS20470 at 980.536 kb on + strand, within ABZR87_RS20470 at 980.536 kb on + strand, within ABZR87_RS20470 at 980.536 kb on + strand, within ABZR87_RS20470 at 980.537 kb on - strand, within ABZR87_RS20470 at 980.680 kb on + strand, within ABZR87_RS20470 at 980.680 kb on + strand, within ABZR87_RS20470 at 980.681 kb on + strand, within ABZR87_RS20470 at 980.681 kb on - strand, within ABZR87_RS20470 at 980.681 kb on - strand, within ABZR87_RS20470 at 980.704 kb on + strand, within ABZR87_RS20470 at 980.705 kb on - strand, within ABZR87_RS20470 at 980.715 kb on + strand, within ABZR87_RS20470 at 980.715 kb on + strand, within ABZR87_RS20470 at 980.715 kb on + strand, within ABZR87_RS20470 at 980.715 kb on + strand, within ABZR87_RS20470 at 980.716 kb on - strand, within ABZR87_RS20470 at 980.716 kb on - strand, within ABZR87_RS20470 at 980.716 kb on - strand, within ABZR87_RS20470 at 980.785 kb on + strand, within ABZR87_RS20470 at 980.857 kb on + strand, within ABZR87_RS20470 at 980.858 kb on - strand, within ABZR87_RS20470 at 980.858 kb on - strand, within ABZR87_RS20470 at 980.879 kb on + strand, within ABZR87_RS20470 at 980.879 kb on + strand, within ABZR87_RS20470 at 980.880 kb on - strand, within ABZR87_RS20470 at 980.920 kb on + strand, within ABZR87_RS20470 at 980.920 kb on + strand, within ABZR87_RS20470 at 980.921 kb on - strand, within ABZR87_RS20470 at 980.921 kb on - strand, within ABZR87_RS20470 at 980.956 kb on + strand, within ABZR87_RS20470 at 980.957 kb on - strand, within ABZR87_RS20470 at 980.957 kb on - strand, within ABZR87_RS20470 at 980.957 kb on - strand, within ABZR87_RS20470 at 981.010 kb on + strand, within ABZR87_RS20470 at 981.112 kb on + strand, within ABZR87_RS20470 at 981.112 kb on + strand, within ABZR87_RS20470 at 981.467 kb on + strand at 981.467 kb on + strand at 981.467 kb on + strand at 981.468 kb on - strand at 981.574 kb on - strand, within ABZR87_RS20475 at 981.623 kb on + strand, within ABZR87_RS20475 at 981.624 kb on - strand, within ABZR87_RS20475 at 981.624 kb on - strand, within ABZR87_RS20475 at 981.861 kb on - strand, within ABZR87_RS20475 at 981.967 kb on - strand, within ABZR87_RS20475 at 982.005 kb on + strand, within ABZR87_RS20475 at 982.006 kb on - strand, within ABZR87_RS20475 at 982.136 kb on + strand, within ABZR87_RS20475 at 982.137 kb on - strand, within ABZR87_RS20475 at 982.274 kb on + strand, within ABZR87_RS20475 at 982.275 kb on - strand, within ABZR87_RS20475 at 982.326 kb on + strand, within ABZR87_RS20475
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 978,842 + ABZR87_RS20465 0.10 +0.2 978,843 - ABZR87_RS20465 0.10 -2.4 979,027 + ABZR87_RS20465 0.31 +1.0 979,027 + ABZR87_RS20465 0.31 +1.9 979,028 - ABZR87_RS20465 0.31 +0.8 979,203 + ABZR87_RS20465 0.51 +0.8 979,203 + ABZR87_RS20465 0.51 -0.0 979,203 + ABZR87_RS20465 0.51 +0.4 979,313 + ABZR87_RS20465 0.64 -1.0 979,313 + ABZR87_RS20465 0.64 -2.0 979,313 + ABZR87_RS20465 0.64 -2.3 979,313 + ABZR87_RS20465 0.64 +0.3 979,313 + ABZR87_RS20465 0.64 +0.7 979,313 + ABZR87_RS20465 0.64 +0.5 979,313 + ABZR87_RS20465 0.64 -1.5 979,314 - ABZR87_RS20465 0.64 -0.1 979,314 - ABZR87_RS20465 0.64 +0.8 979,668 + -0.0 979,739 + -1.2 979,739 + -0.1 979,762 - -0.4 979,874 - ABZR87_RS20470 0.10 -1.6 979,874 - ABZR87_RS20470 0.10 -1.2 979,921 + ABZR87_RS20470 0.13 -1.3 979,921 + ABZR87_RS20470 0.13 +0.1 979,921 + ABZR87_RS20470 0.13 +0.2 979,921 + ABZR87_RS20470 0.13 +0.2 979,922 - ABZR87_RS20470 0.13 +0.4 979,922 - ABZR87_RS20470 0.13 +0.5 979,975 + ABZR87_RS20470 0.16 +0.4 979,976 - ABZR87_RS20470 0.16 -0.3 979,976 - ABZR87_RS20470 0.16 +0.7 980,120 - ABZR87_RS20470 0.24 +0.1 980,164 + ABZR87_RS20470 0.27 +0.3 980,165 - ABZR87_RS20470 0.27 -2.5 980,289 - ABZR87_RS20470 0.34 -2.3 980,386 + ABZR87_RS20470 0.40 -1.0 980,386 + ABZR87_RS20470 0.40 +1.3 980,386 + ABZR87_RS20470 0.40 +0.5 980,386 + ABZR87_RS20470 0.40 -0.0 980,386 + ABZR87_RS20470 0.40 -2.0 980,387 - ABZR87_RS20470 0.40 -0.4 980,387 - ABZR87_RS20470 0.40 +0.3 980,387 - ABZR87_RS20470 0.40 +0.7 980,387 - ABZR87_RS20470 0.40 +0.4 980,387 - ABZR87_RS20470 0.40 +0.1 980,413 + ABZR87_RS20470 0.41 -0.6 980,414 - ABZR87_RS20470 0.41 -0.1 980,443 - ABZR87_RS20470 0.43 -0.6 980,536 + ABZR87_RS20470 0.48 -0.3 980,536 + ABZR87_RS20470 0.48 +1.3 980,536 + ABZR87_RS20470 0.48 +0.4 980,536 + ABZR87_RS20470 0.48 +2.5 980,537 - ABZR87_RS20470 0.48 -1.3 980,680 + ABZR87_RS20470 0.56 +1.0 980,680 + ABZR87_RS20470 0.56 -2.0 980,681 + ABZR87_RS20470 0.56 +1.5 980,681 - ABZR87_RS20470 0.56 -0.2 980,681 - ABZR87_RS20470 0.56 +0.7 980,704 + ABZR87_RS20470 0.58 +0.2 980,705 - ABZR87_RS20470 0.58 -0.2 980,715 + ABZR87_RS20470 0.58 +0.7 980,715 + ABZR87_RS20470 0.58 -0.9 980,715 + ABZR87_RS20470 0.58 -0.0 980,715 + ABZR87_RS20470 0.58 +0.2 980,716 - ABZR87_RS20470 0.58 -0.4 980,716 - ABZR87_RS20470 0.58 -0.3 980,716 - ABZR87_RS20470 0.58 +0.3 980,785 + ABZR87_RS20470 0.62 -0.1 980,857 + ABZR87_RS20470 0.66 -0.8 980,858 - ABZR87_RS20470 0.66 -1.4 980,858 - ABZR87_RS20470 0.66 -1.3 980,879 + ABZR87_RS20470 0.67 +0.7 980,879 + ABZR87_RS20470 0.67 -0.3 980,880 - ABZR87_RS20470 0.68 -0.0 980,920 + ABZR87_RS20470 0.70 -1.4 980,920 + ABZR87_RS20470 0.70 -0.4 980,921 - ABZR87_RS20470 0.70 +0.2 980,921 - ABZR87_RS20470 0.70 -3.1 980,956 + ABZR87_RS20470 0.72 +1.3 980,957 - ABZR87_RS20470 0.72 -1.4 980,957 - ABZR87_RS20470 0.72 +0.1 980,957 - ABZR87_RS20470 0.72 -1.1 981,010 + ABZR87_RS20470 0.75 +0.7 981,112 + ABZR87_RS20470 0.81 +0.7 981,112 + ABZR87_RS20470 0.81 -1.3 981,467 + +0.6 981,467 + -0.5 981,467 + +1.9 981,468 - -0.3 981,574 - ABZR87_RS20475 0.10 -0.2 981,623 + ABZR87_RS20475 0.15 -0.5 981,624 - ABZR87_RS20475 0.15 -0.2 981,624 - ABZR87_RS20475 0.15 +0.9 981,861 - ABZR87_RS20475 0.36 +0.2 981,967 - ABZR87_RS20475 0.46 -0.7 982,005 + ABZR87_RS20475 0.49 +0.6 982,006 - ABZR87_RS20475 0.49 +1.3 982,136 + ABZR87_RS20475 0.61 +0.6 982,137 - ABZR87_RS20475 0.61 -0.9 982,274 + ABZR87_RS20475 0.73 +0.3 982,275 - ABZR87_RS20475 0.73 -0.9 982,326 + ABZR87_RS20475 0.78 -1.0
Or see this region's nucleotide sequence