Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20310 and ABZR87_RS20315 are separated by 4 nucleotides ABZR87_RS20315 and ABZR87_RS20320 are separated by 1 nucleotides ABZR87_RS20320 and ABZR87_RS20325 are separated by 41 nucleotides
ABZR87_RS20310: ABZR87_RS20310 - SMP-30/gluconolactonase/LRE family protein, at 944,836 to 945,738
_RS20310
ABZR87_RS20315: ABZR87_RS20315 - NAD(P)-dependent oxidoreductase, at 945,743 to 946,588
_RS20315
ABZR87_RS20320: ABZR87_RS20320 - galactarate dehydratase, at 946,590 to 948,191
_RS20320
ABZR87_RS20325: ABZR87_RS20325 - enolase C-terminal domain-like protein, at 948,233 to 949,642
_RS20325
Position (kb) 946
947
948
949 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 945.724 kb on + strand at 945.724 kb on + strand at 945.724 kb on + strand at 945.724 kb on + strand at 945.725 kb on - strand at 945.725 kb on - strand at 945.786 kb on + strand at 945.862 kb on + strand, within ABZR87_RS20315 at 945.930 kb on + strand, within ABZR87_RS20315 at 945.931 kb on - strand, within ABZR87_RS20315 at 945.940 kb on + strand, within ABZR87_RS20315 at 945.940 kb on + strand, within ABZR87_RS20315 at 945.941 kb on - strand, within ABZR87_RS20315 at 945.941 kb on - strand, within ABZR87_RS20315 at 946.092 kb on + strand, within ABZR87_RS20315 at 946.119 kb on - strand, within ABZR87_RS20315 at 946.119 kb on - strand, within ABZR87_RS20315 at 946.135 kb on - strand, within ABZR87_RS20315 at 946.137 kb on + strand, within ABZR87_RS20315 at 946.138 kb on - strand, within ABZR87_RS20315 at 946.138 kb on - strand, within ABZR87_RS20315 at 946.189 kb on - strand, within ABZR87_RS20315 at 946.189 kb on - strand, within ABZR87_RS20315 at 946.257 kb on + strand, within ABZR87_RS20315 at 946.258 kb on - strand, within ABZR87_RS20315 at 946.267 kb on - strand, within ABZR87_RS20315 at 946.436 kb on + strand, within ABZR87_RS20315 at 946.436 kb on + strand, within ABZR87_RS20315 at 946.437 kb on - strand, within ABZR87_RS20315 at 946.437 kb on - strand, within ABZR87_RS20315 at 946.588 kb on + strand at 946.589 kb on - strand at 946.589 kb on - strand at 946.589 kb on - strand at 946.589 kb on - strand at 946.932 kb on + strand, within ABZR87_RS20320 at 946.932 kb on + strand, within ABZR87_RS20320 at 946.933 kb on - strand, within ABZR87_RS20320 at 946.933 kb on - strand, within ABZR87_RS20320 at 947.098 kb on + strand, within ABZR87_RS20320 at 947.098 kb on + strand, within ABZR87_RS20320 at 947.099 kb on - strand, within ABZR87_RS20320 at 947.099 kb on - strand, within ABZR87_RS20320 at 947.099 kb on - strand, within ABZR87_RS20320 at 947.108 kb on - strand, within ABZR87_RS20320 at 947.108 kb on - strand, within ABZR87_RS20320 at 947.650 kb on + strand, within ABZR87_RS20320 at 947.651 kb on - strand, within ABZR87_RS20320 at 947.651 kb on - strand, within ABZR87_RS20320 at 947.651 kb on - strand, within ABZR87_RS20320 at 947.651 kb on - strand, within ABZR87_RS20320 at 947.651 kb on - strand, within ABZR87_RS20320 at 947.728 kb on + strand, within ABZR87_RS20320 at 947.729 kb on - strand, within ABZR87_RS20320 at 947.729 kb on - strand, within ABZR87_RS20320 at 947.729 kb on - strand, within ABZR87_RS20320 at 947.729 kb on - strand, within ABZR87_RS20320 at 947.813 kb on - strand, within ABZR87_RS20320 at 947.827 kb on + strand, within ABZR87_RS20320 at 947.828 kb on - strand, within ABZR87_RS20320 at 947.930 kb on + strand, within ABZR87_RS20320 at 947.956 kb on + strand, within ABZR87_RS20320 at 947.956 kb on + strand, within ABZR87_RS20320 at 947.974 kb on + strand, within ABZR87_RS20320 at 948.264 kb on + strand at 948.264 kb on + strand at 948.264 kb on + strand at 948.264 kb on + strand at 948.265 kb on - strand at 948.265 kb on - strand at 948.285 kb on + strand at 948.285 kb on + strand at 948.285 kb on + strand at 948.285 kb on + strand at 948.285 kb on + strand at 948.333 kb on + strand at 948.333 kb on + strand at 948.334 kb on - strand at 948.650 kb on - strand, within ABZR87_RS20325 at 948.801 kb on + strand, within ABZR87_RS20325 at 948.801 kb on + strand, within ABZR87_RS20325 at 948.802 kb on - strand, within ABZR87_RS20325 at 948.978 kb on + strand, within ABZR87_RS20325 at 948.979 kb on - strand, within ABZR87_RS20325 at 949.116 kb on + strand, within ABZR87_RS20325 at 949.116 kb on + strand, within ABZR87_RS20325 at 949.117 kb on - strand, within ABZR87_RS20325 at 949.117 kb on - strand, within ABZR87_RS20325 at 949.117 kb on - strand, within ABZR87_RS20325 at 949.125 kb on + strand, within ABZR87_RS20325 at 949.125 kb on + strand, within ABZR87_RS20325
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 945,724 + -0.3 945,724 + -0.2 945,724 + -0.7 945,724 + +0.4 945,725 - -0.1 945,725 - +0.0 945,786 + +0.9 945,862 + ABZR87_RS20315 0.14 -1.0 945,930 + ABZR87_RS20315 0.22 -3.5 945,931 - ABZR87_RS20315 0.22 -2.2 945,940 + ABZR87_RS20315 0.23 -2.1 945,940 + ABZR87_RS20315 0.23 +0.2 945,941 - ABZR87_RS20315 0.23 -1.3 945,941 - ABZR87_RS20315 0.23 -0.2 946,092 + ABZR87_RS20315 0.41 -0.7 946,119 - ABZR87_RS20315 0.44 -1.7 946,119 - ABZR87_RS20315 0.44 +0.9 946,135 - ABZR87_RS20315 0.46 -0.2 946,137 + ABZR87_RS20315 0.47 +0.8 946,138 - ABZR87_RS20315 0.47 -2.3 946,138 - ABZR87_RS20315 0.47 -0.1 946,189 - ABZR87_RS20315 0.53 -2.3 946,189 - ABZR87_RS20315 0.53 -1.6 946,257 + ABZR87_RS20315 0.61 -0.4 946,258 - ABZR87_RS20315 0.61 -0.2 946,267 - ABZR87_RS20315 0.62 -0.7 946,436 + ABZR87_RS20315 0.82 -1.8 946,436 + ABZR87_RS20315 0.82 -0.7 946,437 - ABZR87_RS20315 0.82 -1.1 946,437 - ABZR87_RS20315 0.82 -0.5 946,588 + +0.5 946,589 - -0.2 946,589 - -1.1 946,589 - -0.9 946,589 - -1.3 946,932 + ABZR87_RS20320 0.21 -0.3 946,932 + ABZR87_RS20320 0.21 -0.3 946,933 - ABZR87_RS20320 0.21 +3.7 946,933 - ABZR87_RS20320 0.21 +0.4 947,098 + ABZR87_RS20320 0.32 -0.6 947,098 + ABZR87_RS20320 0.32 -0.9 947,099 - ABZR87_RS20320 0.32 +0.5 947,099 - ABZR87_RS20320 0.32 +0.2 947,099 - ABZR87_RS20320 0.32 +0.4 947,108 - ABZR87_RS20320 0.32 -0.0 947,108 - ABZR87_RS20320 0.32 -1.1 947,650 + ABZR87_RS20320 0.66 +0.6 947,651 - ABZR87_RS20320 0.66 -2.2 947,651 - ABZR87_RS20320 0.66 +1.2 947,651 - ABZR87_RS20320 0.66 +1.1 947,651 - ABZR87_RS20320 0.66 -0.9 947,651 - ABZR87_RS20320 0.66 -0.2 947,728 + ABZR87_RS20320 0.71 +1.0 947,729 - ABZR87_RS20320 0.71 -1.5 947,729 - ABZR87_RS20320 0.71 -2.2 947,729 - ABZR87_RS20320 0.71 -0.5 947,729 - ABZR87_RS20320 0.71 +0.1 947,813 - ABZR87_RS20320 0.76 -1.0 947,827 + ABZR87_RS20320 0.77 +1.6 947,828 - ABZR87_RS20320 0.77 +1.2 947,930 + ABZR87_RS20320 0.84 +0.8 947,956 + ABZR87_RS20320 0.85 -0.1 947,956 + ABZR87_RS20320 0.85 -0.4 947,974 + ABZR87_RS20320 0.86 +0.1 948,264 + +0.0 948,264 + -1.2 948,264 + -1.1 948,264 + -0.4 948,265 - -1.1 948,265 - -2.2 948,285 + +1.1 948,285 + +1.9 948,285 + +0.5 948,285 + +1.4 948,285 + -0.3 948,333 + +0.6 948,333 + +1.1 948,334 - +1.8 948,650 - ABZR87_RS20325 0.30 -1.8 948,801 + ABZR87_RS20325 0.40 -2.0 948,801 + ABZR87_RS20325 0.40 -3.0 948,802 - ABZR87_RS20325 0.40 +0.4 948,978 + ABZR87_RS20325 0.53 +1.4 948,979 - ABZR87_RS20325 0.53 -1.0 949,116 + ABZR87_RS20325 0.63 -0.2 949,116 + ABZR87_RS20325 0.63 +2.3 949,117 - ABZR87_RS20325 0.63 +0.6 949,117 - ABZR87_RS20325 0.63 +0.5 949,117 - ABZR87_RS20325 0.63 +0.1 949,125 + ABZR87_RS20325 0.63 -2.0 949,125 + ABZR87_RS20325 0.63 -1.8
Or see this region's nucleotide sequence