Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19930 and ABZR87_RS19935 are separated by 126 nucleotides ABZR87_RS19935 and ABZR87_RS19940 are separated by 262 nucleotides ABZR87_RS19940 and ABZR87_RS19945 are separated by 5 nucleotides
ABZR87_RS19930: ABZR87_RS19930 - PAS domain-containing sensor histidine kinase, at 847,683 to 849,251
_RS19930
ABZR87_RS19935: ABZR87_RS19935 - hypothetical protein, at 849,378 to 849,728
_RS19935
ABZR87_RS19940: ABZR87_RS19940 - hypothetical protein, at 849,991 to 850,635
_RS19940
ABZR87_RS19945: ABZR87_RS19945 - heavy metal translocating P-type ATPase, at 850,641 to 852,932
_RS19945
Position (kb) 849
850 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 848.680 kb on + strand, within ABZR87_RS19930 at 848.680 kb on + strand, within ABZR87_RS19930 at 848.680 kb on + strand, within ABZR87_RS19930 at 848.681 kb on - strand, within ABZR87_RS19930 at 848.695 kb on + strand, within ABZR87_RS19930 at 848.696 kb on - strand, within ABZR87_RS19930 at 848.696 kb on - strand, within ABZR87_RS19930 at 848.723 kb on + strand, within ABZR87_RS19930 at 848.723 kb on + strand, within ABZR87_RS19930 at 848.723 kb on + strand, within ABZR87_RS19930 at 848.723 kb on + strand, within ABZR87_RS19930 at 848.724 kb on - strand, within ABZR87_RS19930 at 848.724 kb on - strand, within ABZR87_RS19930 at 848.724 kb on - strand, within ABZR87_RS19930 at 848.724 kb on - strand, within ABZR87_RS19930 at 848.755 kb on + strand, within ABZR87_RS19930 at 848.755 kb on + strand, within ABZR87_RS19930 at 848.756 kb on - strand, within ABZR87_RS19930 at 848.851 kb on + strand, within ABZR87_RS19930 at 848.851 kb on + strand, within ABZR87_RS19930 at 848.851 kb on + strand, within ABZR87_RS19930 at 848.852 kb on - strand, within ABZR87_RS19930 at 848.852 kb on - strand, within ABZR87_RS19930 at 848.951 kb on + strand, within ABZR87_RS19930 at 849.167 kb on + strand at 849.168 kb on - strand at 849.206 kb on + strand at 849.206 kb on + strand at 849.206 kb on + strand at 849.206 kb on + strand at 849.207 kb on - strand at 849.207 kb on - strand at 849.208 kb on + strand at 849.208 kb on + strand at 849.208 kb on + strand at 849.208 kb on + strand at 849.208 kb on + strand at 849.208 kb on + strand at 849.208 kb on + strand at 849.208 kb on + strand at 849.208 kb on + strand at 849.209 kb on - strand at 849.209 kb on - strand at 849.209 kb on - strand at 849.209 kb on - strand at 849.209 kb on - strand at 849.228 kb on + strand at 849.228 kb on + strand at 849.229 kb on - strand at 849.232 kb on - strand at 849.297 kb on + strand at 849.297 kb on + strand at 849.297 kb on + strand at 849.297 kb on + strand at 849.297 kb on + strand at 849.298 kb on - strand at 849.298 kb on - strand at 849.298 kb on - strand at 849.298 kb on - strand at 849.298 kb on - strand at 849.298 kb on - strand at 849.298 kb on - strand at 849.326 kb on + strand at 849.327 kb on - strand at 849.511 kb on + strand, within ABZR87_RS19935 at 849.511 kb on + strand, within ABZR87_RS19935 at 849.512 kb on - strand, within ABZR87_RS19935 at 849.512 kb on - strand, within ABZR87_RS19935 at 849.512 kb on - strand, within ABZR87_RS19935 at 849.512 kb on - strand, within ABZR87_RS19935 at 849.512 kb on - strand, within ABZR87_RS19935 at 849.521 kb on - strand, within ABZR87_RS19935 at 849.566 kb on - strand, within ABZR87_RS19935 at 849.566 kb on - strand, within ABZR87_RS19935 at 849.566 kb on - strand, within ABZR87_RS19935 at 849.566 kb on - strand, within ABZR87_RS19935 at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.752 kb on + strand at 849.753 kb on - strand at 849.753 kb on - strand at 849.753 kb on - strand at 849.803 kb on - strand at 849.870 kb on + strand at 849.870 kb on + strand at 849.870 kb on + strand at 849.870 kb on + strand at 849.871 kb on - strand at 849.871 kb on - strand at 849.871 kb on - strand at 849.871 kb on - strand at 849.891 kb on + strand at 849.895 kb on + strand at 849.895 kb on + strand at 849.899 kb on + strand at 849.917 kb on - strand at 849.929 kb on + strand at 849.929 kb on + strand at 849.930 kb on - strand at 849.930 kb on - strand at 849.930 kb on - strand at 849.930 kb on - strand at 849.941 kb on + strand at 849.941 kb on + strand at 850.106 kb on + strand, within ABZR87_RS19940 at 850.117 kb on - strand, within ABZR87_RS19940 at 850.145 kb on + strand, within ABZR87_RS19940 at 850.145 kb on + strand, within ABZR87_RS19940 at 850.145 kb on + strand, within ABZR87_RS19940 at 850.146 kb on - strand, within ABZR87_RS19940 at 850.146 kb on - strand, within ABZR87_RS19940 at 850.146 kb on - strand, within ABZR87_RS19940 at 850.156 kb on - strand, within ABZR87_RS19940 at 850.156 kb on - strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.157 kb on + strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.158 kb on - strand, within ABZR87_RS19940 at 850.191 kb on - strand, within ABZR87_RS19940 at 850.191 kb on - strand, within ABZR87_RS19940 at 850.229 kb on + strand, within ABZR87_RS19940 at 850.229 kb on + strand, within ABZR87_RS19940 at 850.230 kb on - strand, within ABZR87_RS19940 at 850.230 kb on - strand, within ABZR87_RS19940 at 850.310 kb on + strand, within ABZR87_RS19940 at 850.310 kb on + strand, within ABZR87_RS19940 at 850.310 kb on + strand, within ABZR87_RS19940 at 850.310 kb on + strand, within ABZR87_RS19940 at 850.310 kb on + strand, within ABZR87_RS19940 at 850.310 kb on + strand, within ABZR87_RS19940 at 850.310 kb on + strand, within ABZR87_RS19940 at 850.310 kb on + strand, within ABZR87_RS19940 at 850.310 kb on + strand, within ABZR87_RS19940 at 850.311 kb on - strand, within ABZR87_RS19940 at 850.311 kb on - strand, within ABZR87_RS19940 at 850.311 kb on - strand, within ABZR87_RS19940 at 850.311 kb on - strand, within ABZR87_RS19940 at 850.311 kb on - strand, within ABZR87_RS19940 at 850.311 kb on - strand, within ABZR87_RS19940 at 850.311 kb on - strand, within ABZR87_RS19940 at 850.329 kb on + strand, within ABZR87_RS19940 at 850.330 kb on - strand, within ABZR87_RS19940 at 850.337 kb on + strand, within ABZR87_RS19940 at 850.362 kb on + strand, within ABZR87_RS19940 at 850.363 kb on - strand, within ABZR87_RS19940 at 850.439 kb on - strand, within ABZR87_RS19940 at 850.717 kb on + strand at 850.717 kb on + strand at 850.717 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 848,680 + ABZR87_RS19930 0.64 +0.2 848,680 + ABZR87_RS19930 0.64 -2.5 848,680 + ABZR87_RS19930 0.64 -1.5 848,681 - ABZR87_RS19930 0.64 +1.6 848,695 + ABZR87_RS19930 0.64 +0.6 848,696 - ABZR87_RS19930 0.65 -1.0 848,696 - ABZR87_RS19930 0.65 -1.2 848,723 + ABZR87_RS19930 0.66 +0.2 848,723 + ABZR87_RS19930 0.66 -1.2 848,723 + ABZR87_RS19930 0.66 +0.6 848,723 + ABZR87_RS19930 0.66 -1.0 848,724 - ABZR87_RS19930 0.66 +0.5 848,724 - ABZR87_RS19930 0.66 -0.3 848,724 - ABZR87_RS19930 0.66 -1.4 848,724 - ABZR87_RS19930 0.66 +1.1 848,755 + ABZR87_RS19930 0.68 -1.5 848,755 + ABZR87_RS19930 0.68 +0.8 848,756 - ABZR87_RS19930 0.68 -0.5 848,851 + ABZR87_RS19930 0.74 +0.4 848,851 + ABZR87_RS19930 0.74 -3.0 848,851 + ABZR87_RS19930 0.74 +1.0 848,852 - ABZR87_RS19930 0.75 +0.1 848,852 - ABZR87_RS19930 0.75 +0.8 848,951 + ABZR87_RS19930 0.81 -1.5 849,167 + -0.1 849,168 - +1.1 849,206 + -0.3 849,206 + +0.6 849,206 + +0.9 849,206 + -1.4 849,207 - -1.5 849,207 - -0.3 849,208 + -0.0 849,208 + -1.6 849,208 + -0.4 849,208 + -1.1 849,208 + -1.0 849,208 + +0.9 849,208 + -0.2 849,208 + +1.5 849,208 + +0.4 849,209 - +0.6 849,209 - -0.2 849,209 - +1.0 849,209 - -0.5 849,209 - +0.6 849,228 + -0.2 849,228 + -0.1 849,229 - -2.3 849,232 - +0.0 849,297 + -0.2 849,297 + +1.0 849,297 + +2.4 849,297 + -0.8 849,297 + +0.5 849,298 - -0.5 849,298 - -1.1 849,298 - -1.1 849,298 - -0.3 849,298 - -0.8 849,298 - +0.4 849,298 - +0.6 849,326 + +1.2 849,327 - -0.6 849,511 + ABZR87_RS19935 0.38 +0.4 849,511 + ABZR87_RS19935 0.38 +0.8 849,512 - ABZR87_RS19935 0.38 +0.6 849,512 - ABZR87_RS19935 0.38 +0.8 849,512 - ABZR87_RS19935 0.38 +1.5 849,512 - ABZR87_RS19935 0.38 -1.9 849,512 - ABZR87_RS19935 0.38 -0.3 849,521 - ABZR87_RS19935 0.41 +1.1 849,566 - ABZR87_RS19935 0.54 -0.9 849,566 - ABZR87_RS19935 0.54 -0.5 849,566 - ABZR87_RS19935 0.54 +0.4 849,566 - ABZR87_RS19935 0.54 +1.3 849,752 + -1.0 849,752 + -0.1 849,752 + -0.5 849,752 + +0.3 849,752 + +0.9 849,752 + -0.1 849,752 + +1.0 849,752 + -0.2 849,752 + +1.0 849,752 + +0.9 849,752 + -0.6 849,753 - -0.1 849,753 - +0.3 849,753 - -0.6 849,803 - -0.7 849,870 + -2.3 849,870 + -0.2 849,870 + +0.4 849,870 + -0.6 849,871 - +3.3 849,871 - -1.9 849,871 - +0.1 849,871 - -2.2 849,891 + -0.9 849,895 + +1.5 849,895 + -1.5 849,899 + +2.9 849,917 - -0.8 849,929 + -0.3 849,929 + +0.6 849,930 - +0.2 849,930 - +0.1 849,930 - +2.9 849,930 - -0.4 849,941 + +0.3 849,941 + +0.5 850,106 + ABZR87_RS19940 0.18 +0.3 850,117 - ABZR87_RS19940 0.20 -0.3 850,145 + ABZR87_RS19940 0.24 +0.3 850,145 + ABZR87_RS19940 0.24 +0.7 850,145 + ABZR87_RS19940 0.24 -0.0 850,146 - ABZR87_RS19940 0.24 -0.4 850,146 - ABZR87_RS19940 0.24 -1.0 850,146 - ABZR87_RS19940 0.24 +0.3 850,156 - ABZR87_RS19940 0.26 +0.3 850,156 - ABZR87_RS19940 0.26 +2.7 850,157 + ABZR87_RS19940 0.26 +1.9 850,157 + ABZR87_RS19940 0.26 -3.2 850,157 + ABZR87_RS19940 0.26 -1.8 850,157 + ABZR87_RS19940 0.26 +0.4 850,157 + ABZR87_RS19940 0.26 -0.6 850,157 + ABZR87_RS19940 0.26 +1.7 850,157 + ABZR87_RS19940 0.26 +0.2 850,157 + ABZR87_RS19940 0.26 -0.5 850,158 - ABZR87_RS19940 0.26 +1.5 850,158 - ABZR87_RS19940 0.26 -1.8 850,158 - ABZR87_RS19940 0.26 -1.0 850,158 - ABZR87_RS19940 0.26 -0.1 850,158 - ABZR87_RS19940 0.26 -3.3 850,158 - ABZR87_RS19940 0.26 +1.6 850,158 - ABZR87_RS19940 0.26 +0.2 850,191 - ABZR87_RS19940 0.31 +0.1 850,191 - ABZR87_RS19940 0.31 +0.1 850,229 + ABZR87_RS19940 0.37 +0.3 850,229 + ABZR87_RS19940 0.37 +0.2 850,230 - ABZR87_RS19940 0.37 -0.5 850,230 - ABZR87_RS19940 0.37 +0.2 850,310 + ABZR87_RS19940 0.49 -1.2 850,310 + ABZR87_RS19940 0.49 -0.4 850,310 + ABZR87_RS19940 0.49 +0.1 850,310 + ABZR87_RS19940 0.49 -2.8 850,310 + ABZR87_RS19940 0.49 -0.6 850,310 + ABZR87_RS19940 0.49 +0.3 850,310 + ABZR87_RS19940 0.49 +0.0 850,310 + ABZR87_RS19940 0.49 +0.4 850,310 + ABZR87_RS19940 0.49 -1.6 850,311 - ABZR87_RS19940 0.50 -0.1 850,311 - ABZR87_RS19940 0.50 +1.1 850,311 - ABZR87_RS19940 0.50 -0.1 850,311 - ABZR87_RS19940 0.50 -0.9 850,311 - ABZR87_RS19940 0.50 -0.6 850,311 - ABZR87_RS19940 0.50 -0.9 850,311 - ABZR87_RS19940 0.50 -0.2 850,329 + ABZR87_RS19940 0.52 -2.6 850,330 - ABZR87_RS19940 0.53 -1.1 850,337 + ABZR87_RS19940 0.54 -1.5 850,362 + ABZR87_RS19940 0.58 +0.8 850,363 - ABZR87_RS19940 0.58 -0.3 850,439 - ABZR87_RS19940 0.69 -0.2 850,717 + +0.3 850,717 + -1.4 850,717 + -0.7
Or see this region's nucleotide sequence