Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19220 and ABZR87_RS19225 are separated by 66 nucleotides ABZR87_RS19225 and ABZR87_RS19230 are separated by 7 nucleotides ABZR87_RS19230 and ABZR87_RS19235 are separated by 2 nucleotides ABZR87_RS19235 and ABZR87_RS19240 overlap by 4 nucleotides
ABZR87_RS19220: ABZR87_RS19220 - DUF6622 family protein, at 676,048 to 676,551
_RS19220
ABZR87_RS19225: ABZR87_RS19225 - TOBE domain-containing protein, at 676,618 to 677,430
_RS19225
ABZR87_RS19230: ABZR87_RS19230 - NAD(P)H-dependent oxidoreductase, at 677,438 to 677,935
_RS19230
ABZR87_RS19235: ABZR87_RS19235 - ATP-binding cassette domain-containing protein, at 677,938 to 678,681
_RS19235
ABZR87_RS19240: ABZR87_RS19240 - molybdate ABC transporter permease subunit, at 678,678 to 679,364
_RS19240
Position (kb) 677
678 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 676.528 kb on - strand at 676.753 kb on + strand, within ABZR87_RS19225 at 676.753 kb on + strand, within ABZR87_RS19225 at 676.753 kb on + strand, within ABZR87_RS19225 at 676.754 kb on - strand, within ABZR87_RS19225 at 676.754 kb on - strand, within ABZR87_RS19225 at 677.004 kb on + strand, within ABZR87_RS19225 at 677.004 kb on + strand, within ABZR87_RS19225 at 677.004 kb on + strand, within ABZR87_RS19225 at 677.004 kb on + strand, within ABZR87_RS19225 at 677.005 kb on - strand, within ABZR87_RS19225 at 677.005 kb on - strand, within ABZR87_RS19225 at 677.242 kb on + strand, within ABZR87_RS19225 at 677.466 kb on - strand at 677.466 kb on - strand at 677.466 kb on - strand at 677.466 kb on - strand at 677.600 kb on + strand, within ABZR87_RS19230 at 677.600 kb on + strand, within ABZR87_RS19230 at 677.601 kb on - strand, within ABZR87_RS19230 at 677.670 kb on - strand, within ABZR87_RS19230 at 677.670 kb on - strand, within ABZR87_RS19230 at 677.670 kb on - strand, within ABZR87_RS19230 at 677.673 kb on - strand, within ABZR87_RS19230 at 677.673 kb on - strand, within ABZR87_RS19230 at 677.706 kb on - strand, within ABZR87_RS19230 at 677.874 kb on + strand, within ABZR87_RS19230 at 677.874 kb on + strand, within ABZR87_RS19230 at 677.875 kb on - strand, within ABZR87_RS19230 at 678.040 kb on + strand, within ABZR87_RS19235 at 678.061 kb on + strand, within ABZR87_RS19235 at 678.061 kb on + strand, within ABZR87_RS19235 at 678.061 kb on + strand, within ABZR87_RS19235 at 678.062 kb on - strand, within ABZR87_RS19235 at 678.062 kb on - strand, within ABZR87_RS19235 at 678.062 kb on - strand, within ABZR87_RS19235 at 678.062 kb on - strand, within ABZR87_RS19235 at 678.082 kb on - strand, within ABZR87_RS19235 at 678.082 kb on - strand, within ABZR87_RS19235 at 678.407 kb on + strand, within ABZR87_RS19235 at 678.408 kb on - strand, within ABZR87_RS19235 at 678.422 kb on + strand, within ABZR87_RS19235 at 678.422 kb on + strand, within ABZR87_RS19235 at 678.573 kb on - strand, within ABZR87_RS19235 at 678.681 kb on + strand at 678.681 kb on + strand at 678.681 kb on + strand at 678.681 kb on + strand at 678.682 kb on - strand at 678.682 kb on - strand at 678.817 kb on + strand, within ABZR87_RS19240 at 678.817 kb on + strand, within ABZR87_RS19240 at 678.817 kb on + strand, within ABZR87_RS19240 at 678.818 kb on - strand, within ABZR87_RS19240
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 676,528 - +1.0 676,753 + ABZR87_RS19225 0.17 +1.1 676,753 + ABZR87_RS19225 0.17 -0.9 676,753 + ABZR87_RS19225 0.17 -1.4 676,754 - ABZR87_RS19225 0.17 +1.5 676,754 - ABZR87_RS19225 0.17 -0.4 677,004 + ABZR87_RS19225 0.47 -2.6 677,004 + ABZR87_RS19225 0.47 -1.2 677,004 + ABZR87_RS19225 0.47 -0.6 677,004 + ABZR87_RS19225 0.47 +0.2 677,005 - ABZR87_RS19225 0.48 -2.0 677,005 - ABZR87_RS19225 0.48 -1.2 677,242 + ABZR87_RS19225 0.77 +0.1 677,466 - -2.0 677,466 - -0.5 677,466 - +0.9 677,466 - +1.2 677,600 + ABZR87_RS19230 0.33 +0.6 677,600 + ABZR87_RS19230 0.33 +1.3 677,601 - ABZR87_RS19230 0.33 +0.6 677,670 - ABZR87_RS19230 0.47 -1.3 677,670 - ABZR87_RS19230 0.47 +0.8 677,670 - ABZR87_RS19230 0.47 +0.1 677,673 - ABZR87_RS19230 0.47 -1.0 677,673 - ABZR87_RS19230 0.47 -0.5 677,706 - ABZR87_RS19230 0.54 +0.4 677,874 + ABZR87_RS19230 0.88 -0.0 677,874 + ABZR87_RS19230 0.88 -0.5 677,875 - ABZR87_RS19230 0.88 -1.1 678,040 + ABZR87_RS19235 0.14 -1.3 678,061 + ABZR87_RS19235 0.17 +0.2 678,061 + ABZR87_RS19235 0.17 -0.2 678,061 + ABZR87_RS19235 0.17 -0.5 678,062 - ABZR87_RS19235 0.17 +0.1 678,062 - ABZR87_RS19235 0.17 +0.8 678,062 - ABZR87_RS19235 0.17 +0.3 678,062 - ABZR87_RS19235 0.17 -0.3 678,082 - ABZR87_RS19235 0.19 -3.2 678,082 - ABZR87_RS19235 0.19 -0.3 678,407 + ABZR87_RS19235 0.63 +0.3 678,408 - ABZR87_RS19235 0.63 +1.2 678,422 + ABZR87_RS19235 0.65 +2.2 678,422 + ABZR87_RS19235 0.65 -1.2 678,573 - ABZR87_RS19235 0.85 +1.0 678,681 + +1.2 678,681 + -0.4 678,681 + -0.8 678,681 + +0.8 678,682 - +1.6 678,682 - -0.5 678,817 + ABZR87_RS19240 0.20 -1.8 678,817 + ABZR87_RS19240 0.20 +0.9 678,817 + ABZR87_RS19240 0.20 +0.6 678,818 - ABZR87_RS19240 0.20 -0.6
Or see this region's nucleotide sequence