Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19210 and ABZR87_RS19215 are separated by 713 nucleotides ABZR87_RS19215 and ABZR87_RS19220 are separated by 122 nucleotides ABZR87_RS19220 and ABZR87_RS19225 are separated by 66 nucleotides
ABZR87_RS19210: ABZR87_RS19210 - glycoprotein, at 672,069 to 672,461
_RS19210
ABZR87_RS19215: ABZR87_RS19215 - EAL domain-containing protein, at 673,175 to 675,925
_RS19215
ABZR87_RS19220: ABZR87_RS19220 - DUF6622 family protein, at 676,048 to 676,551
_RS19220
ABZR87_RS19225: ABZR87_RS19225 - TOBE domain-containing protein, at 676,618 to 677,430
_RS19225
Position (kb) 673
674
675
676 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 672.625 kb on + strand at 672.625 kb on + strand at 672.626 kb on - strand at 672.649 kb on + strand at 672.649 kb on + strand at 672.649 kb on + strand at 672.657 kb on + strand at 672.658 kb on - strand at 672.658 kb on - strand at 672.658 kb on - strand at 672.670 kb on + strand at 672.670 kb on + strand at 672.670 kb on + strand at 672.671 kb on - strand at 672.671 kb on - strand at 672.671 kb on - strand at 672.671 kb on - strand at 672.671 kb on - strand at 672.671 kb on - strand at 672.671 kb on - strand at 672.826 kb on + strand at 672.827 kb on - strand at 672.867 kb on + strand at 672.868 kb on - strand at 672.874 kb on + strand at 672.874 kb on + strand at 672.874 kb on + strand at 672.874 kb on + strand at 672.875 kb on - strand at 672.875 kb on - strand at 672.897 kb on + strand at 673.015 kb on + strand at 673.015 kb on + strand at 673.016 kb on - strand at 673.044 kb on + strand at 673.108 kb on + strand at 673.108 kb on + strand at 673.108 kb on + strand at 673.109 kb on - strand at 673.109 kb on - strand at 673.109 kb on - strand at 673.109 kb on - strand at 673.500 kb on + strand, within ABZR87_RS19215 at 673.501 kb on - strand, within ABZR87_RS19215 at 673.501 kb on - strand, within ABZR87_RS19215 at 673.541 kb on + strand, within ABZR87_RS19215 at 673.541 kb on + strand, within ABZR87_RS19215 at 673.773 kb on - strand, within ABZR87_RS19215 at 673.787 kb on + strand, within ABZR87_RS19215 at 673.788 kb on - strand, within ABZR87_RS19215 at 673.874 kb on + strand, within ABZR87_RS19215 at 673.875 kb on - strand, within ABZR87_RS19215 at 673.937 kb on + strand, within ABZR87_RS19215 at 673.937 kb on + strand, within ABZR87_RS19215 at 673.938 kb on - strand, within ABZR87_RS19215 at 673.938 kb on - strand, within ABZR87_RS19215 at 673.938 kb on - strand, within ABZR87_RS19215 at 674.090 kb on + strand, within ABZR87_RS19215 at 674.091 kb on - strand, within ABZR87_RS19215 at 674.091 kb on - strand, within ABZR87_RS19215 at 674.453 kb on + strand, within ABZR87_RS19215 at 674.564 kb on - strand, within ABZR87_RS19215 at 674.742 kb on + strand, within ABZR87_RS19215 at 674.963 kb on + strand, within ABZR87_RS19215 at 674.963 kb on + strand, within ABZR87_RS19215 at 674.963 kb on + strand, within ABZR87_RS19215 at 674.964 kb on - strand, within ABZR87_RS19215 at 674.964 kb on - strand, within ABZR87_RS19215 at 674.964 kb on - strand, within ABZR87_RS19215 at 674.994 kb on - strand, within ABZR87_RS19215 at 675.050 kb on + strand, within ABZR87_RS19215 at 675.090 kb on - strand, within ABZR87_RS19215 at 675.125 kb on + strand, within ABZR87_RS19215 at 675.125 kb on + strand, within ABZR87_RS19215 at 675.125 kb on + strand, within ABZR87_RS19215 at 675.125 kb on + strand, within ABZR87_RS19215 at 675.126 kb on - strand, within ABZR87_RS19215 at 675.126 kb on - strand, within ABZR87_RS19215 at 675.182 kb on + strand, within ABZR87_RS19215 at 675.183 kb on - strand, within ABZR87_RS19215 at 675.194 kb on + strand, within ABZR87_RS19215 at 675.195 kb on - strand, within ABZR87_RS19215 at 675.195 kb on - strand, within ABZR87_RS19215 at 675.369 kb on - strand, within ABZR87_RS19215 at 675.608 kb on + strand, within ABZR87_RS19215 at 675.623 kb on + strand, within ABZR87_RS19215 at 675.623 kb on + strand, within ABZR87_RS19215 at 675.624 kb on - strand, within ABZR87_RS19215 at 675.830 kb on + strand at 675.830 kb on + strand at 675.831 kb on - strand at 675.831 kb on - strand at 675.831 kb on - strand at 675.831 kb on - strand at 675.831 kb on - strand at 676.016 kb on + strand at 676.016 kb on + strand at 676.016 kb on + strand at 676.016 kb on + strand at 676.017 kb on - strand at 676.017 kb on - strand at 676.062 kb on + strand at 676.063 kb on - strand at 676.063 kb on - strand at 676.063 kb on - strand at 676.063 kb on - strand at 676.081 kb on - strand at 676.081 kb on - strand at 676.081 kb on - strand at 676.207 kb on + strand, within ABZR87_RS19220 at 676.207 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.337 kb on + strand, within ABZR87_RS19220 at 676.337 kb on + strand, within ABZR87_RS19220 at 676.396 kb on + strand, within ABZR87_RS19220 at 676.402 kb on + strand, within ABZR87_RS19220 at 676.402 kb on + strand, within ABZR87_RS19220 at 676.528 kb on - strand at 676.753 kb on + strand, within ABZR87_RS19225 at 676.753 kb on + strand, within ABZR87_RS19225 at 676.753 kb on + strand, within ABZR87_RS19225 at 676.754 kb on - strand, within ABZR87_RS19225 at 676.754 kb on - strand, within ABZR87_RS19225
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 672,625 + -0.7 672,625 + -0.6 672,626 - +0.5 672,649 + -0.7 672,649 + -1.0 672,649 + -0.0 672,657 + -2.6 672,658 - -0.1 672,658 - +0.5 672,658 - +0.1 672,670 + -0.7 672,670 + +1.1 672,670 + +0.4 672,671 - +0.4 672,671 - -2.0 672,671 - -0.4 672,671 - -0.8 672,671 - +0.8 672,671 - -0.0 672,671 - +1.4 672,826 + -1.9 672,827 - -2.0 672,867 + -1.5 672,868 - -0.2 672,874 + +1.9 672,874 + -0.3 672,874 + +0.9 672,874 + -1.6 672,875 - +0.9 672,875 - -2.6 672,897 + -0.5 673,015 + +0.2 673,015 + -2.2 673,016 - +0.7 673,044 + -0.3 673,108 + +0.0 673,108 + -1.3 673,108 + +0.5 673,109 - -0.8 673,109 - +0.9 673,109 - -0.2 673,109 - +0.4 673,500 + ABZR87_RS19215 0.12 +0.4 673,501 - ABZR87_RS19215 0.12 -0.2 673,501 - ABZR87_RS19215 0.12 +2.0 673,541 + ABZR87_RS19215 0.13 -0.3 673,541 + ABZR87_RS19215 0.13 +1.4 673,773 - ABZR87_RS19215 0.22 -0.8 673,787 + ABZR87_RS19215 0.22 +1.7 673,788 - ABZR87_RS19215 0.22 +1.8 673,874 + ABZR87_RS19215 0.25 +0.2 673,875 - ABZR87_RS19215 0.25 -0.1 673,937 + ABZR87_RS19215 0.28 -0.4 673,937 + ABZR87_RS19215 0.28 -0.1 673,938 - ABZR87_RS19215 0.28 +1.2 673,938 - ABZR87_RS19215 0.28 +1.5 673,938 - ABZR87_RS19215 0.28 -0.4 674,090 + ABZR87_RS19215 0.33 +0.5 674,091 - ABZR87_RS19215 0.33 -1.6 674,091 - ABZR87_RS19215 0.33 +1.0 674,453 + ABZR87_RS19215 0.46 +0.3 674,564 - ABZR87_RS19215 0.50 +0.2 674,742 + ABZR87_RS19215 0.57 +2.1 674,963 + ABZR87_RS19215 0.65 +1.1 674,963 + ABZR87_RS19215 0.65 +0.3 674,963 + ABZR87_RS19215 0.65 +0.5 674,964 - ABZR87_RS19215 0.65 +0.6 674,964 - ABZR87_RS19215 0.65 +3.1 674,964 - ABZR87_RS19215 0.65 +0.6 674,994 - ABZR87_RS19215 0.66 +1.4 675,050 + ABZR87_RS19215 0.68 -0.9 675,090 - ABZR87_RS19215 0.70 +1.3 675,125 + ABZR87_RS19215 0.71 +0.3 675,125 + ABZR87_RS19215 0.71 +0.7 675,125 + ABZR87_RS19215 0.71 +1.0 675,125 + ABZR87_RS19215 0.71 +1.2 675,126 - ABZR87_RS19215 0.71 +1.0 675,126 - ABZR87_RS19215 0.71 +0.6 675,182 + ABZR87_RS19215 0.73 +2.4 675,183 - ABZR87_RS19215 0.73 -0.4 675,194 + ABZR87_RS19215 0.73 +0.5 675,195 - ABZR87_RS19215 0.73 +1.4 675,195 - ABZR87_RS19215 0.73 -0.1 675,369 - ABZR87_RS19215 0.80 +0.3 675,608 + ABZR87_RS19215 0.88 +0.6 675,623 + ABZR87_RS19215 0.89 -0.1 675,623 + ABZR87_RS19215 0.89 +0.7 675,624 - ABZR87_RS19215 0.89 -0.4 675,830 + +1.0 675,830 + +0.4 675,831 - -0.2 675,831 - -1.2 675,831 - +1.4 675,831 - +1.8 675,831 - +2.4 676,016 + -0.4 676,016 + -0.5 676,016 + -0.2 676,016 + +0.4 676,017 - -0.2 676,017 - +0.7 676,062 + +0.4 676,063 - -0.2 676,063 - +0.6 676,063 - +0.1 676,063 - +0.1 676,081 - -0.0 676,081 - -1.2 676,081 - +0.3 676,207 + ABZR87_RS19220 0.32 -0.1 676,207 + ABZR87_RS19220 0.32 +0.8 676,291 + ABZR87_RS19220 0.48 +1.1 676,291 + ABZR87_RS19220 0.48 +0.8 676,291 + ABZR87_RS19220 0.48 +1.8 676,291 + ABZR87_RS19220 0.48 -0.9 676,291 + ABZR87_RS19220 0.48 -0.4 676,291 + ABZR87_RS19220 0.48 +0.9 676,291 + ABZR87_RS19220 0.48 +0.7 676,292 - ABZR87_RS19220 0.48 +1.2 676,292 - ABZR87_RS19220 0.48 +0.6 676,292 - ABZR87_RS19220 0.48 -0.3 676,292 - ABZR87_RS19220 0.48 -0.9 676,292 - ABZR87_RS19220 0.48 -0.5 676,292 - ABZR87_RS19220 0.48 -0.0 676,292 - ABZR87_RS19220 0.48 +0.4 676,292 - ABZR87_RS19220 0.48 +1.2 676,292 - ABZR87_RS19220 0.48 -1.3 676,337 + ABZR87_RS19220 0.57 -1.1 676,337 + ABZR87_RS19220 0.57 -0.7 676,396 + ABZR87_RS19220 0.69 +0.5 676,402 + ABZR87_RS19220 0.70 +1.5 676,402 + ABZR87_RS19220 0.70 -1.6 676,528 - +1.0 676,753 + ABZR87_RS19225 0.17 +1.1 676,753 + ABZR87_RS19225 0.17 -0.9 676,753 + ABZR87_RS19225 0.17 -1.4 676,754 - ABZR87_RS19225 0.17 +1.5 676,754 - ABZR87_RS19225 0.17 -0.4
Or see this region's nucleotide sequence