Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19015 and ABZR87_RS19020 are separated by 2 nucleotides ABZR87_RS19020 and ABZR87_RS19025 overlap by 4 nucleotides
ABZR87_RS19015: ABZR87_RS19015 - efflux transporter outer membrane subunit, at 623,522 to 625,027
_RS19015
ABZR87_RS19020: ABZR87_RS19020 - multidrug efflux RND transporter permease subunit, at 625,030 to 628,131
_RS19020
ABZR87_RS19025: ABZR87_RS19025 - MdtB/MuxB family multidrug efflux RND transporter permease subunit, at 628,128 to 631,262
_RS19025
Position (kb) 625
626
627
628
629 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 624.052 kb on - strand, within ABZR87_RS19015 at 624.363 kb on + strand, within ABZR87_RS19015 at 624.456 kb on + strand, within ABZR87_RS19015 at 624.456 kb on + strand, within ABZR87_RS19015 at 624.456 kb on + strand, within ABZR87_RS19015 at 624.456 kb on + strand, within ABZR87_RS19015 at 624.456 kb on + strand, within ABZR87_RS19015 at 624.457 kb on - strand, within ABZR87_RS19015 at 624.500 kb on + strand, within ABZR87_RS19015 at 624.501 kb on - strand, within ABZR87_RS19015 at 624.756 kb on + strand, within ABZR87_RS19015 at 624.906 kb on + strand at 624.906 kb on + strand at 624.906 kb on + strand at 624.906 kb on + strand at 624.906 kb on + strand at 624.907 kb on - strand at 624.907 kb on - strand at 624.907 kb on - strand at 624.907 kb on - strand at 624.939 kb on + strand at 624.940 kb on - strand at 625.115 kb on + strand at 625.115 kb on + strand at 625.133 kb on + strand at 625.134 kb on - strand at 625.134 kb on - strand at 625.504 kb on + strand, within ABZR87_RS19020 at 625.505 kb on - strand, within ABZR87_RS19020 at 625.505 kb on - strand, within ABZR87_RS19020 at 625.505 kb on - strand, within ABZR87_RS19020 at 625.505 kb on - strand, within ABZR87_RS19020 at 625.505 kb on - strand, within ABZR87_RS19020 at 625.505 kb on - strand, within ABZR87_RS19020 at 625.505 kb on - strand, within ABZR87_RS19020 at 625.505 kb on - strand, within ABZR87_RS19020 at 625.508 kb on + strand, within ABZR87_RS19020 at 625.508 kb on + strand, within ABZR87_RS19020 at 625.508 kb on + strand, within ABZR87_RS19020 at 625.508 kb on + strand, within ABZR87_RS19020 at 625.508 kb on + strand, within ABZR87_RS19020 at 625.508 kb on + strand, within ABZR87_RS19020 at 625.508 kb on + strand, within ABZR87_RS19020 at 625.508 kb on + strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.509 kb on - strand, within ABZR87_RS19020 at 625.517 kb on + strand, within ABZR87_RS19020 at 625.518 kb on - strand, within ABZR87_RS19020 at 625.538 kb on + strand, within ABZR87_RS19020 at 625.539 kb on - strand, within ABZR87_RS19020 at 625.829 kb on + strand, within ABZR87_RS19020 at 625.829 kb on + strand, within ABZR87_RS19020 at 625.829 kb on + strand, within ABZR87_RS19020 at 625.829 kb on + strand, within ABZR87_RS19020 at 625.830 kb on - strand, within ABZR87_RS19020 at 625.830 kb on - strand, within ABZR87_RS19020 at 625.830 kb on - strand, within ABZR87_RS19020 at 625.830 kb on - strand, within ABZR87_RS19020 at 625.830 kb on - strand, within ABZR87_RS19020 at 625.863 kb on - strand, within ABZR87_RS19020 at 625.863 kb on - strand, within ABZR87_RS19020 at 625.892 kb on + strand, within ABZR87_RS19020 at 625.910 kb on + strand, within ABZR87_RS19020 at 625.910 kb on + strand, within ABZR87_RS19020 at 625.910 kb on + strand, within ABZR87_RS19020 at 625.911 kb on - strand, within ABZR87_RS19020 at 625.911 kb on - strand, within ABZR87_RS19020 at 625.921 kb on + strand, within ABZR87_RS19020 at 625.922 kb on - strand, within ABZR87_RS19020 at 625.922 kb on - strand, within ABZR87_RS19020 at 626.040 kb on + strand, within ABZR87_RS19020 at 626.041 kb on - strand, within ABZR87_RS19020 at 626.141 kb on + strand, within ABZR87_RS19020 at 626.141 kb on + strand, within ABZR87_RS19020 at 626.141 kb on + strand, within ABZR87_RS19020 at 626.141 kb on + strand, within ABZR87_RS19020 at 626.141 kb on + strand, within ABZR87_RS19020 at 626.142 kb on - strand, within ABZR87_RS19020 at 626.188 kb on + strand, within ABZR87_RS19020 at 626.313 kb on + strand, within ABZR87_RS19020 at 626.334 kb on + strand, within ABZR87_RS19020 at 626.498 kb on + strand, within ABZR87_RS19020 at 626.498 kb on + strand, within ABZR87_RS19020 at 626.498 kb on + strand, within ABZR87_RS19020 at 626.498 kb on + strand, within ABZR87_RS19020 at 626.499 kb on - strand, within ABZR87_RS19020 at 626.499 kb on - strand, within ABZR87_RS19020 at 626.499 kb on - strand, within ABZR87_RS19020 at 626.499 kb on - strand, within ABZR87_RS19020 at 626.504 kb on + strand, within ABZR87_RS19020 at 626.504 kb on + strand, within ABZR87_RS19020 at 626.505 kb on - strand, within ABZR87_RS19020 at 626.505 kb on - strand, within ABZR87_RS19020 at 626.586 kb on - strand, within ABZR87_RS19020 at 626.688 kb on + strand, within ABZR87_RS19020 at 626.987 kb on + strand, within ABZR87_RS19020 at 626.988 kb on - strand, within ABZR87_RS19020 at 626.999 kb on + strand, within ABZR87_RS19020 at 626.999 kb on + strand, within ABZR87_RS19020 at 626.999 kb on + strand, within ABZR87_RS19020 at 626.999 kb on + strand, within ABZR87_RS19020 at 626.999 kb on + strand, within ABZR87_RS19020 at 627.279 kb on + strand, within ABZR87_RS19020 at 627.410 kb on + strand, within ABZR87_RS19020 at 627.410 kb on + strand, within ABZR87_RS19020 at 627.410 kb on + strand, within ABZR87_RS19020 at 627.443 kb on + strand, within ABZR87_RS19020 at 627.443 kb on + strand, within ABZR87_RS19020 at 627.444 kb on - strand, within ABZR87_RS19020 at 627.444 kb on - strand, within ABZR87_RS19020 at 627.444 kb on - strand, within ABZR87_RS19020 at 627.543 kb on - strand, within ABZR87_RS19020 at 627.543 kb on - strand, within ABZR87_RS19020 at 627.668 kb on + strand, within ABZR87_RS19020 at 627.668 kb on + strand, within ABZR87_RS19020 at 627.669 kb on - strand, within ABZR87_RS19020 at 627.669 kb on - strand, within ABZR87_RS19020 at 627.669 kb on - strand, within ABZR87_RS19020 at 627.669 kb on - strand, within ABZR87_RS19020 at 627.669 kb on - strand, within ABZR87_RS19020 at 627.759 kb on + strand, within ABZR87_RS19020 at 627.759 kb on + strand, within ABZR87_RS19020 at 627.759 kb on + strand, within ABZR87_RS19020 at 628.234 kb on + strand at 628.234 kb on + strand at 628.235 kb on - strand at 628.235 kb on - strand at 628.417 kb on + strand at 628.417 kb on + strand at 628.418 kb on - strand at 628.418 kb on - strand at 628.418 kb on - strand at 628.418 kb on - strand at 628.657 kb on + strand, within ABZR87_RS19025 at 628.657 kb on + strand, within ABZR87_RS19025 at 628.657 kb on + strand, within ABZR87_RS19025 at 628.657 kb on + strand, within ABZR87_RS19025 at 628.657 kb on + strand, within ABZR87_RS19025 at 628.657 kb on + strand, within ABZR87_RS19025 at 628.657 kb on + strand, within ABZR87_RS19025 at 628.657 kb on + strand, within ABZR87_RS19025 at 628.657 kb on + strand, within ABZR87_RS19025 at 628.657 kb on + strand, within ABZR87_RS19025 at 628.658 kb on - strand, within ABZR87_RS19025 at 628.658 kb on - strand, within ABZR87_RS19025 at 628.658 kb on - strand, within ABZR87_RS19025 at 628.658 kb on - strand, within ABZR87_RS19025 at 628.658 kb on - strand, within ABZR87_RS19025 at 628.658 kb on - strand, within ABZR87_RS19025 at 628.658 kb on - strand, within ABZR87_RS19025 at 629.056 kb on + strand, within ABZR87_RS19025 at 629.057 kb on - strand, within ABZR87_RS19025 at 629.066 kb on - strand, within ABZR87_RS19025 at 629.101 kb on + strand, within ABZR87_RS19025
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 624,052 - ABZR87_RS19015 0.35 +0.5 624,363 + ABZR87_RS19015 0.56 -0.2 624,456 + ABZR87_RS19015 0.62 -0.3 624,456 + ABZR87_RS19015 0.62 +0.0 624,456 + ABZR87_RS19015 0.62 -0.1 624,456 + ABZR87_RS19015 0.62 +0.6 624,456 + ABZR87_RS19015 0.62 +0.5 624,457 - ABZR87_RS19015 0.62 -0.7 624,500 + ABZR87_RS19015 0.65 -0.8 624,501 - ABZR87_RS19015 0.65 +0.1 624,756 + ABZR87_RS19015 0.82 -0.8 624,906 + -1.9 624,906 + +1.6 624,906 + +0.9 624,906 + +0.3 624,906 + -0.0 624,907 - +0.3 624,907 - +0.6 624,907 - -0.7 624,907 - -1.5 624,939 + -1.1 624,940 - +0.3 625,115 + +1.4 625,115 + +1.2 625,133 + -2.2 625,134 - -1.9 625,134 - -1.1 625,504 + ABZR87_RS19020 0.15 -0.6 625,505 - ABZR87_RS19020 0.15 -0.4 625,505 - ABZR87_RS19020 0.15 -1.2 625,505 - ABZR87_RS19020 0.15 -2.0 625,505 - ABZR87_RS19020 0.15 -3.7 625,505 - ABZR87_RS19020 0.15 +0.2 625,505 - ABZR87_RS19020 0.15 -1.5 625,505 - ABZR87_RS19020 0.15 -3.3 625,505 - ABZR87_RS19020 0.15 -1.3 625,508 + ABZR87_RS19020 0.15 -1.1 625,508 + ABZR87_RS19020 0.15 -0.9 625,508 + ABZR87_RS19020 0.15 -0.5 625,508 + ABZR87_RS19020 0.15 -0.2 625,508 + ABZR87_RS19020 0.15 -0.5 625,508 + ABZR87_RS19020 0.15 -0.8 625,508 + ABZR87_RS19020 0.15 -1.2 625,508 + ABZR87_RS19020 0.15 +1.5 625,509 - ABZR87_RS19020 0.15 -2.4 625,509 - ABZR87_RS19020 0.15 -1.8 625,509 - ABZR87_RS19020 0.15 -2.1 625,509 - ABZR87_RS19020 0.15 -1.4 625,509 - ABZR87_RS19020 0.15 +0.9 625,509 - ABZR87_RS19020 0.15 -0.2 625,509 - ABZR87_RS19020 0.15 +1.4 625,509 - ABZR87_RS19020 0.15 +0.9 625,509 - ABZR87_RS19020 0.15 -1.0 625,509 - ABZR87_RS19020 0.15 -1.5 625,509 - ABZR87_RS19020 0.15 +0.0 625,509 - ABZR87_RS19020 0.15 -1.0 625,509 - ABZR87_RS19020 0.15 -1.0 625,509 - ABZR87_RS19020 0.15 -1.7 625,517 + ABZR87_RS19020 0.16 -1.7 625,518 - ABZR87_RS19020 0.16 -1.2 625,538 + ABZR87_RS19020 0.16 +0.9 625,539 - ABZR87_RS19020 0.16 -3.8 625,829 + ABZR87_RS19020 0.26 -1.3 625,829 + ABZR87_RS19020 0.26 +2.5 625,829 + ABZR87_RS19020 0.26 +0.0 625,829 + ABZR87_RS19020 0.26 -1.8 625,830 - ABZR87_RS19020 0.26 -1.5 625,830 - ABZR87_RS19020 0.26 -0.7 625,830 - ABZR87_RS19020 0.26 -2.5 625,830 - ABZR87_RS19020 0.26 -0.8 625,830 - ABZR87_RS19020 0.26 -0.5 625,863 - ABZR87_RS19020 0.27 -1.7 625,863 - ABZR87_RS19020 0.27 -2.0 625,892 + ABZR87_RS19020 0.28 -2.3 625,910 + ABZR87_RS19020 0.28 -0.9 625,910 + ABZR87_RS19020 0.28 -0.4 625,910 + ABZR87_RS19020 0.28 -1.9 625,911 - ABZR87_RS19020 0.28 +1.6 625,911 - ABZR87_RS19020 0.28 -2.3 625,921 + ABZR87_RS19020 0.29 -1.4 625,922 - ABZR87_RS19020 0.29 -2.4 625,922 - ABZR87_RS19020 0.29 -1.8 626,040 + ABZR87_RS19020 0.33 -2.0 626,041 - ABZR87_RS19020 0.33 -0.1 626,141 + ABZR87_RS19020 0.36 -1.0 626,141 + ABZR87_RS19020 0.36 -1.4 626,141 + ABZR87_RS19020 0.36 -2.1 626,141 + ABZR87_RS19020 0.36 -1.5 626,141 + ABZR87_RS19020 0.36 -1.6 626,142 - ABZR87_RS19020 0.36 -0.4 626,188 + ABZR87_RS19020 0.37 +0.9 626,313 + ABZR87_RS19020 0.41 +0.1 626,334 + ABZR87_RS19020 0.42 -3.1 626,498 + ABZR87_RS19020 0.47 -0.1 626,498 + ABZR87_RS19020 0.47 -0.7 626,498 + ABZR87_RS19020 0.47 -2.0 626,498 + ABZR87_RS19020 0.47 -2.5 626,499 - ABZR87_RS19020 0.47 -1.3 626,499 - ABZR87_RS19020 0.47 -3.6 626,499 - ABZR87_RS19020 0.47 -0.7 626,499 - ABZR87_RS19020 0.47 -2.7 626,504 + ABZR87_RS19020 0.48 +0.2 626,504 + ABZR87_RS19020 0.48 -0.5 626,505 - ABZR87_RS19020 0.48 -3.3 626,505 - ABZR87_RS19020 0.48 -0.4 626,586 - ABZR87_RS19020 0.50 -3.0 626,688 + ABZR87_RS19020 0.53 -2.0 626,987 + ABZR87_RS19020 0.63 +0.2 626,988 - ABZR87_RS19020 0.63 -3.5 626,999 + ABZR87_RS19020 0.63 -1.8 626,999 + ABZR87_RS19020 0.63 -2.7 626,999 + ABZR87_RS19020 0.63 -1.8 626,999 + ABZR87_RS19020 0.63 -2.3 626,999 + ABZR87_RS19020 0.63 -1.1 627,279 + ABZR87_RS19020 0.73 -1.3 627,410 + ABZR87_RS19020 0.77 -1.0 627,410 + ABZR87_RS19020 0.77 -0.5 627,410 + ABZR87_RS19020 0.77 -0.9 627,443 + ABZR87_RS19020 0.78 -1.1 627,443 + ABZR87_RS19020 0.78 +0.4 627,444 - ABZR87_RS19020 0.78 -2.3 627,444 - ABZR87_RS19020 0.78 -2.3 627,444 - ABZR87_RS19020 0.78 -2.8 627,543 - ABZR87_RS19020 0.81 -0.7 627,543 - ABZR87_RS19020 0.81 -1.1 627,668 + ABZR87_RS19020 0.85 -0.2 627,668 + ABZR87_RS19020 0.85 -0.3 627,669 - ABZR87_RS19020 0.85 -2.6 627,669 - ABZR87_RS19020 0.85 -1.6 627,669 - ABZR87_RS19020 0.85 -1.6 627,669 - ABZR87_RS19020 0.85 -2.1 627,669 - ABZR87_RS19020 0.85 +2.0 627,759 + ABZR87_RS19020 0.88 -3.1 627,759 + ABZR87_RS19020 0.88 -0.8 627,759 + ABZR87_RS19020 0.88 +0.2 628,234 + +0.6 628,234 + +0.3 628,235 - -0.3 628,235 - +0.1 628,417 + -0.4 628,417 + +0.2 628,418 - +0.5 628,418 - -0.4 628,418 - +0.0 628,418 - +0.7 628,657 + ABZR87_RS19025 0.17 -1.0 628,657 + ABZR87_RS19025 0.17 +1.2 628,657 + ABZR87_RS19025 0.17 +2.2 628,657 + ABZR87_RS19025 0.17 +0.4 628,657 + ABZR87_RS19025 0.17 -1.8 628,657 + ABZR87_RS19025 0.17 -2.1 628,657 + ABZR87_RS19025 0.17 -0.2 628,657 + ABZR87_RS19025 0.17 +2.6 628,657 + ABZR87_RS19025 0.17 -0.0 628,657 + ABZR87_RS19025 0.17 +1.1 628,658 - ABZR87_RS19025 0.17 +0.8 628,658 - ABZR87_RS19025 0.17 -0.1 628,658 - ABZR87_RS19025 0.17 -1.0 628,658 - ABZR87_RS19025 0.17 +0.2 628,658 - ABZR87_RS19025 0.17 +0.4 628,658 - ABZR87_RS19025 0.17 -0.6 628,658 - ABZR87_RS19025 0.17 +1.4 629,056 + ABZR87_RS19025 0.30 -0.7 629,057 - ABZR87_RS19025 0.30 -0.3 629,066 - ABZR87_RS19025 0.30 +2.3 629,101 + ABZR87_RS19025 0.31 +0.2
Or see this region's nucleotide sequence