Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18720

Experiment: no_plant_rhizosphere sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18710 and ABZR87_RS18715 are separated by 198 nucleotidesABZR87_RS18715 and ABZR87_RS18720 are separated by 82 nucleotidesABZR87_RS18720 and ABZR87_RS18725 overlap by 1 nucleotides ABZR87_RS18710: ABZR87_RS18710 - hypothetical protein, at 549,611 to 550,792 _RS18710 ABZR87_RS18715: ABZR87_RS18715 - DUF2946 domain-containing protein, at 550,991 to 551,392 _RS18715 ABZR87_RS18720: ABZR87_RS18720 - TonB-dependent receptor, at 551,475 to 553,793 _RS18720 ABZR87_RS18725: ABZR87_RS18725 - sialidase family protein, at 553,793 to 555,046 _RS18725 Position (kb) 551 552 553 554Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 550.580 kb on + strand, within ABZR87_RS18710at 550.580 kb on + strand, within ABZR87_RS18710at 550.580 kb on + strand, within ABZR87_RS18710at 550.580 kb on + strand, within ABZR87_RS18710at 550.580 kb on + strand, within ABZR87_RS18710at 550.581 kb on - strand, within ABZR87_RS18710at 550.581 kb on - strand, within ABZR87_RS18710at 550.581 kb on - strand, within ABZR87_RS18710at 550.590 kb on + strand, within ABZR87_RS18710at 550.590 kb on + strand, within ABZR87_RS18710at 550.590 kb on + strand, within ABZR87_RS18710at 550.590 kb on + strand, within ABZR87_RS18710at 550.590 kb on + strand, within ABZR87_RS18710at 550.590 kb on + strand, within ABZR87_RS18710at 550.590 kb on + strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.861 kb on - strandat 550.861 kb on - strandat 550.861 kb on - strandat 550.961 kb on - strandat 550.962 kb on + strandat 550.962 kb on + strandat 550.962 kb on + strandat 550.962 kb on + strandat 550.963 kb on - strandat 550.986 kb on + strandat 550.987 kb on - strandat 550.987 kb on - strandat 550.987 kb on - strandat 550.987 kb on - strandat 550.987 kb on - strandat 550.991 kb on - strandat 551.034 kb on + strand, within ABZR87_RS18715at 551.035 kb on - strand, within ABZR87_RS18715at 551.035 kb on - strand, within ABZR87_RS18715at 551.035 kb on - strand, within ABZR87_RS18715at 551.043 kb on + strand, within ABZR87_RS18715at 551.043 kb on + strand, within ABZR87_RS18715at 551.043 kb on + strand, within ABZR87_RS18715at 551.044 kb on - strand, within ABZR87_RS18715at 551.044 kb on - strand, within ABZR87_RS18715at 551.044 kb on - strand, within ABZR87_RS18715at 551.044 kb on - strand, within ABZR87_RS18715at 551.045 kb on - strand, within ABZR87_RS18715at 551.213 kb on + strand, within ABZR87_RS18715at 551.213 kb on + strand, within ABZR87_RS18715at 551.213 kb on + strand, within ABZR87_RS18715at 551.214 kb on - strand, within ABZR87_RS18715at 551.214 kb on - strand, within ABZR87_RS18715at 551.288 kb on + strand, within ABZR87_RS18715at 551.288 kb on + strand, within ABZR87_RS18715at 551.288 kb on + strand, within ABZR87_RS18715at 551.289 kb on - strand, within ABZR87_RS18715at 551.289 kb on - strand, within ABZR87_RS18715at 551.324 kb on + strand, within ABZR87_RS18715at 551.325 kb on - strand, within ABZR87_RS18715at 551.407 kb on + strandat 551.407 kb on + strandat 551.407 kb on + strandat 551.407 kb on + strandat 551.407 kb on + strandat 551.408 kb on - strandat 551.673 kb on - strandat 551.673 kb on - strandat 551.673 kb on - strandat 551.752 kb on - strand, within ABZR87_RS18720at 551.752 kb on - strand, within ABZR87_RS18720at 551.752 kb on - strand, within ABZR87_RS18720at 551.853 kb on + strand, within ABZR87_RS18720at 551.853 kb on + strand, within ABZR87_RS18720at 551.853 kb on + strand, within ABZR87_RS18720at 551.854 kb on - strand, within ABZR87_RS18720at 551.854 kb on - strand, within ABZR87_RS18720at 551.854 kb on - strand, within ABZR87_RS18720at 551.854 kb on - strand, within ABZR87_RS18720at 551.854 kb on - strand, within ABZR87_RS18720at 551.895 kb on + strand, within ABZR87_RS18720at 551.895 kb on + strand, within ABZR87_RS18720at 551.896 kb on - strand, within ABZR87_RS18720at 551.951 kb on + strand, within ABZR87_RS18720at 551.952 kb on - strand, within ABZR87_RS18720at 551.954 kb on + strand, within ABZR87_RS18720at 551.958 kb on + strand, within ABZR87_RS18720at 551.958 kb on + strand, within ABZR87_RS18720at 551.958 kb on + strand, within ABZR87_RS18720at 551.959 kb on - strand, within ABZR87_RS18720at 552.075 kb on + strand, within ABZR87_RS18720at 552.075 kb on + strand, within ABZR87_RS18720at 552.076 kb on - strand, within ABZR87_RS18720at 552.076 kb on - strand, within ABZR87_RS18720at 552.087 kb on + strand, within ABZR87_RS18720at 552.088 kb on - strand, within ABZR87_RS18720at 552.159 kb on + strand, within ABZR87_RS18720at 552.160 kb on - strand, within ABZR87_RS18720at 552.160 kb on - strand, within ABZR87_RS18720at 552.207 kb on + strand, within ABZR87_RS18720at 552.207 kb on + strand, within ABZR87_RS18720at 552.208 kb on - strand, within ABZR87_RS18720at 552.208 kb on - strand, within ABZR87_RS18720at 552.364 kb on - strand, within ABZR87_RS18720at 552.364 kb on - strand, within ABZR87_RS18720at 552.504 kb on + strand, within ABZR87_RS18720at 552.505 kb on - strand, within ABZR87_RS18720at 552.505 kb on - strand, within ABZR87_RS18720at 552.505 kb on - strand, within ABZR87_RS18720at 552.562 kb on - strand, within ABZR87_RS18720at 552.602 kb on - strand, within ABZR87_RS18720at 552.621 kb on + strand, within ABZR87_RS18720at 552.621 kb on + strand, within ABZR87_RS18720at 552.621 kb on + strand, within ABZR87_RS18720at 552.690 kb on + strand, within ABZR87_RS18720at 552.755 kb on + strand, within ABZR87_RS18720at 552.755 kb on + strand, within ABZR87_RS18720at 552.755 kb on + strand, within ABZR87_RS18720at 552.755 kb on + strand, within ABZR87_RS18720at 552.756 kb on - strand, within ABZR87_RS18720at 552.756 kb on - strand, within ABZR87_RS18720at 552.756 kb on - strand, within ABZR87_RS18720at 552.756 kb on - strand, within ABZR87_RS18720at 552.756 kb on - strand, within ABZR87_RS18720at 552.778 kb on - strand, within ABZR87_RS18720at 552.778 kb on - strand, within ABZR87_RS18720at 552.786 kb on + strand, within ABZR87_RS18720at 552.787 kb on - strand, within ABZR87_RS18720at 552.787 kb on - strand, within ABZR87_RS18720at 552.787 kb on - strand, within ABZR87_RS18720at 552.787 kb on - strand, within ABZR87_RS18720at 552.839 kb on - strand, within ABZR87_RS18720at 552.963 kb on + strand, within ABZR87_RS18720at 552.964 kb on - strand, within ABZR87_RS18720at 553.241 kb on + strand, within ABZR87_RS18720at 553.242 kb on - strand, within ABZR87_RS18720at 553.242 kb on - strand, within ABZR87_RS18720at 553.278 kb on + strand, within ABZR87_RS18720at 553.278 kb on + strand, within ABZR87_RS18720at 553.279 kb on - strand, within ABZR87_RS18720at 553.279 kb on - strand, within ABZR87_RS18720at 553.279 kb on - strand, within ABZR87_RS18720at 553.365 kb on + strand, within ABZR87_RS18720at 553.473 kb on + strand, within ABZR87_RS18720at 553.473 kb on + strand, within ABZR87_RS18720at 553.474 kb on - strand, within ABZR87_RS18720at 553.626 kb on + strandat 553.627 kb on - strandat 553.671 kb on + strandat 553.676 kb on + strandat 553.732 kb on - strandat 553.740 kb on + strandat 553.741 kb on - strandat 553.767 kb on + strandat 553.767 kb on + strandat 553.768 kb on - strandat 553.768 kb on - strandat 553.768 kb on - strandat 553.768 kb on - strandat 553.768 kb on - strandat 553.768 kb on - strandat 553.768 kb on - strandat 553.791 kb on + strandat 553.791 kb on + strandat 553.791 kb on + strandat 553.792 kb on - strandat 553.792 kb on - strandat 553.792 kb on - strandat 554.057 kb on + strand, within ABZR87_RS18725at 554.057 kb on + strand, within ABZR87_RS18725at 554.057 kb on + strand, within ABZR87_RS18725at 554.057 kb on + strand, within ABZR87_RS18725at 554.057 kb on + strand, within ABZR87_RS18725at 554.057 kb on + strand, within ABZR87_RS18725at 554.058 kb on - strand, within ABZR87_RS18725at 554.058 kb on - strand, within ABZR87_RS18725at 554.058 kb on - strand, within ABZR87_RS18725at 554.111 kb on + strand, within ABZR87_RS18725at 554.111 kb on + strand, within ABZR87_RS18725at 554.111 kb on + strand, within ABZR87_RS18725at 554.111 kb on + strand, within ABZR87_RS18725at 554.111 kb on + strand, within ABZR87_RS18725at 554.111 kb on + strand, within ABZR87_RS18725at 554.111 kb on + strand, within ABZR87_RS18725at 554.111 kb on + strand, within ABZR87_RS18725at 554.111 kb on + strand, within ABZR87_RS18725at 554.111 kb on + strand, within ABZR87_RS18725at 554.112 kb on - strand, within ABZR87_RS18725at 554.112 kb on - strand, within ABZR87_RS18725at 554.112 kb on - strand, within ABZR87_RS18725at 554.112 kb on - strand, within ABZR87_RS18725at 554.112 kb on - strand, within ABZR87_RS18725at 554.112 kb on - strand, within ABZR87_RS18725at 554.144 kb on + strand, within ABZR87_RS18725at 554.144 kb on + strand, within ABZR87_RS18725at 554.144 kb on + strand, within ABZR87_RS18725at 554.337 kb on - strand, within ABZR87_RS18725at 554.354 kb on + strand, within ABZR87_RS18725at 554.354 kb on + strand, within ABZR87_RS18725at 554.354 kb on + strand, within ABZR87_RS18725at 554.355 kb on - strand, within ABZR87_RS18725at 554.357 kb on + strand, within ABZR87_RS18725at 554.357 kb on + strand, within ABZR87_RS18725at 554.357 kb on + strand, within ABZR87_RS18725at 554.357 kb on + strand, within ABZR87_RS18725at 554.357 kb on + strand, within ABZR87_RS18725at 554.357 kb on + strand, within ABZR87_RS18725at 554.358 kb on - strand, within ABZR87_RS18725at 554.358 kb on - strand, within ABZR87_RS18725at 554.358 kb on - strand, within ABZR87_RS18725at 554.358 kb on - strand, within ABZR87_RS18725at 554.358 kb on - strand, within ABZR87_RS18725at 554.536 kb on + strand, within ABZR87_RS18725at 554.537 kb on - strand, within ABZR87_RS18725

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB
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550,580 + ABZR87_RS18710 0.82 -1.5
550,580 + ABZR87_RS18710 0.82 -0.7
550,580 + ABZR87_RS18710 0.82 +1.3
550,580 + ABZR87_RS18710 0.82 -0.1
550,580 + ABZR87_RS18710 0.82 +0.3
550,581 - ABZR87_RS18710 0.82 -0.6
550,581 - ABZR87_RS18710 0.82 +1.2
550,581 - ABZR87_RS18710 0.82 -0.9
550,590 + ABZR87_RS18710 0.83 +0.1
550,590 + ABZR87_RS18710 0.83 -0.6
550,590 + ABZR87_RS18710 0.83 -1.0
550,590 + ABZR87_RS18710 0.83 -0.2
550,590 + ABZR87_RS18710 0.83 -1.4
550,590 + ABZR87_RS18710 0.83 +0.8
550,590 + ABZR87_RS18710 0.83 +1.5
550,591 - ABZR87_RS18710 0.83 +0.3
550,591 - ABZR87_RS18710 0.83 +0.3
550,591 - ABZR87_RS18710 0.83 -3.1
550,591 - ABZR87_RS18710 0.83 -0.8
550,591 - ABZR87_RS18710 0.83 -0.5
550,591 - ABZR87_RS18710 0.83 +0.2
550,591 - ABZR87_RS18710 0.83 +0.8
550,591 - ABZR87_RS18710 0.83 +1.1
550,591 - ABZR87_RS18710 0.83 +0.8
550,591 - ABZR87_RS18710 0.83 -1.6
550,861 - +2.4
550,861 - -0.2
550,861 - +1.4
550,961 - -0.4
550,962 + -2.2
550,962 + -1.5
550,962 + -1.1
550,962 + +0.4
550,963 - +0.7
550,986 + +0.0
550,987 - +0.5
550,987 - +0.6
550,987 - +0.1
550,987 - -0.9
550,987 - -0.2
550,991 - -0.2
551,034 + ABZR87_RS18715 0.11 +1.3
551,035 - ABZR87_RS18715 0.11 -1.1
551,035 - ABZR87_RS18715 0.11 -1.0
551,035 - ABZR87_RS18715 0.11 -1.0
551,043 + ABZR87_RS18715 0.13 +0.7
551,043 + ABZR87_RS18715 0.13 +1.5
551,043 + ABZR87_RS18715 0.13 +1.0
551,044 - ABZR87_RS18715 0.13 -0.2
551,044 - ABZR87_RS18715 0.13 +0.5
551,044 - ABZR87_RS18715 0.13 +1.1
551,044 - ABZR87_RS18715 0.13 +1.2
551,045 - ABZR87_RS18715 0.13 +0.3
551,213 + ABZR87_RS18715 0.55 -1.4
551,213 + ABZR87_RS18715 0.55 +0.4
551,213 + ABZR87_RS18715 0.55 -1.6
551,214 - ABZR87_RS18715 0.55 -1.3
551,214 - ABZR87_RS18715 0.55 +0.0
551,288 + ABZR87_RS18715 0.74 +0.5
551,288 + ABZR87_RS18715 0.74 +1.1
551,288 + ABZR87_RS18715 0.74 +0.6
551,289 - ABZR87_RS18715 0.74 +0.1
551,289 - ABZR87_RS18715 0.74 -0.2
551,324 + ABZR87_RS18715 0.83 -0.6
551,325 - ABZR87_RS18715 0.83 -0.5
551,407 + -1.3
551,407 + +1.2
551,407 + -1.2
551,407 + -0.6
551,407 + -0.1
551,408 - -1.1
551,673 - +0.3
551,673 - +0.5
551,673 - -0.4
551,752 - ABZR87_RS18720 0.12 -0.1
551,752 - ABZR87_RS18720 0.12 -0.8
551,752 - ABZR87_RS18720 0.12 -0.2
551,853 + ABZR87_RS18720 0.16 -0.7
551,853 + ABZR87_RS18720 0.16 +0.6
551,853 + ABZR87_RS18720 0.16 +0.1
551,854 - ABZR87_RS18720 0.16 -0.4
551,854 - ABZR87_RS18720 0.16 -0.0
551,854 - ABZR87_RS18720 0.16 -0.2
551,854 - ABZR87_RS18720 0.16 -0.4
551,854 - ABZR87_RS18720 0.16 +0.7
551,895 + ABZR87_RS18720 0.18 -1.8
551,895 + ABZR87_RS18720 0.18 -0.2
551,896 - ABZR87_RS18720 0.18 +0.2
551,951 + ABZR87_RS18720 0.21 -0.2
551,952 - ABZR87_RS18720 0.21 +2.3
551,954 + ABZR87_RS18720 0.21 -0.4
551,958 + ABZR87_RS18720 0.21 -1.0
551,958 + ABZR87_RS18720 0.21 +0.9
551,958 + ABZR87_RS18720 0.21 -0.8
551,959 - ABZR87_RS18720 0.21 +0.7
552,075 + ABZR87_RS18720 0.26 -0.4
552,075 + ABZR87_RS18720 0.26 -1.2
552,076 - ABZR87_RS18720 0.26 -1.9
552,076 - ABZR87_RS18720 0.26 -1.6
552,087 + ABZR87_RS18720 0.26 -0.4
552,088 - ABZR87_RS18720 0.26 +0.2
552,159 + ABZR87_RS18720 0.29 -1.3
552,160 - ABZR87_RS18720 0.30 -0.9
552,160 - ABZR87_RS18720 0.30 +0.8
552,207 + ABZR87_RS18720 0.32 +0.4
552,207 + ABZR87_RS18720 0.32 -0.5
552,208 - ABZR87_RS18720 0.32 +0.7
552,208 - ABZR87_RS18720 0.32 +1.0
552,364 - ABZR87_RS18720 0.38 -0.8
552,364 - ABZR87_RS18720 0.38 -1.3
552,504 + ABZR87_RS18720 0.44 -1.9
552,505 - ABZR87_RS18720 0.44 -1.7
552,505 - ABZR87_RS18720 0.44 -1.7
552,505 - ABZR87_RS18720 0.44 -0.1
552,562 - ABZR87_RS18720 0.47 +1.1
552,602 - ABZR87_RS18720 0.49 -1.0
552,621 + ABZR87_RS18720 0.49 -0.5
552,621 + ABZR87_RS18720 0.49 -0.8
552,621 + ABZR87_RS18720 0.49 -0.3
552,690 + ABZR87_RS18720 0.52 -0.3
552,755 + ABZR87_RS18720 0.55 +0.8
552,755 + ABZR87_RS18720 0.55 +0.2
552,755 + ABZR87_RS18720 0.55 +0.2
552,755 + ABZR87_RS18720 0.55 -0.0
552,756 - ABZR87_RS18720 0.55 +0.7
552,756 - ABZR87_RS18720 0.55 -1.5
552,756 - ABZR87_RS18720 0.55 -1.7
552,756 - ABZR87_RS18720 0.55 +0.1
552,756 - ABZR87_RS18720 0.55 -0.3
552,778 - ABZR87_RS18720 0.56 -0.2
552,778 - ABZR87_RS18720 0.56 +0.1
552,786 + ABZR87_RS18720 0.57 +0.1
552,787 - ABZR87_RS18720 0.57 +0.4
552,787 - ABZR87_RS18720 0.57 -0.6
552,787 - ABZR87_RS18720 0.57 -2.8
552,787 - ABZR87_RS18720 0.57 -2.0
552,839 - ABZR87_RS18720 0.59 -0.9
552,963 + ABZR87_RS18720 0.64 +0.5
552,964 - ABZR87_RS18720 0.64 +0.4
553,241 + ABZR87_RS18720 0.76 -1.1
553,242 - ABZR87_RS18720 0.76 -0.9
553,242 - ABZR87_RS18720 0.76 -2.2
553,278 + ABZR87_RS18720 0.78 -0.1
553,278 + ABZR87_RS18720 0.78 -2.3
553,279 - ABZR87_RS18720 0.78 -0.7
553,279 - ABZR87_RS18720 0.78 +0.1
553,279 - ABZR87_RS18720 0.78 +0.5
553,365 + ABZR87_RS18720 0.82 +0.2
553,473 + ABZR87_RS18720 0.86 -0.2
553,473 + ABZR87_RS18720 0.86 -0.4
553,474 - ABZR87_RS18720 0.86 +3.6
553,626 + -0.4
553,627 - +1.2
553,671 + -0.3
553,676 + +2.0
553,732 - +0.0
553,740 + -0.5
553,741 - +0.8
553,767 + +2.9
553,767 + -1.5
553,768 - -0.2
553,768 - -0.5
553,768 - -1.1
553,768 - -2.0
553,768 - -1.4
553,768 - -2.0
553,768 - +0.1
553,791 + +2.9
553,791 + +0.5
553,791 + +0.0
553,792 - +0.1
553,792 - -0.1
553,792 - +0.0
554,057 + ABZR87_RS18725 0.21 -1.0
554,057 + ABZR87_RS18725 0.21 -0.2
554,057 + ABZR87_RS18725 0.21 -1.9
554,057 + ABZR87_RS18725 0.21 +0.6
554,057 + ABZR87_RS18725 0.21 +2.3
554,057 + ABZR87_RS18725 0.21 -0.2
554,058 - ABZR87_RS18725 0.21 +1.0
554,058 - ABZR87_RS18725 0.21 +0.1
554,058 - ABZR87_RS18725 0.21 -1.0
554,111 + ABZR87_RS18725 0.25 +1.6
554,111 + ABZR87_RS18725 0.25 -0.5
554,111 + ABZR87_RS18725 0.25 +0.2
554,111 + ABZR87_RS18725 0.25 -1.1
554,111 + ABZR87_RS18725 0.25 +0.9
554,111 + ABZR87_RS18725 0.25 -0.1
554,111 + ABZR87_RS18725 0.25 +0.2
554,111 + ABZR87_RS18725 0.25 -1.4
554,111 + ABZR87_RS18725 0.25 -0.5
554,111 + ABZR87_RS18725 0.25 +1.3
554,112 - ABZR87_RS18725 0.25 +0.9
554,112 - ABZR87_RS18725 0.25 +0.4
554,112 - ABZR87_RS18725 0.25 -1.3
554,112 - ABZR87_RS18725 0.25 -1.3
554,112 - ABZR87_RS18725 0.25 -1.0
554,112 - ABZR87_RS18725 0.25 -1.2
554,144 + ABZR87_RS18725 0.28 -0.5
554,144 + ABZR87_RS18725 0.28 -0.2
554,144 + ABZR87_RS18725 0.28 +0.6
554,337 - ABZR87_RS18725 0.43 +2.3
554,354 + ABZR87_RS18725 0.45 -0.3
554,354 + ABZR87_RS18725 0.45 -0.4
554,354 + ABZR87_RS18725 0.45 +0.5
554,355 - ABZR87_RS18725 0.45 +0.5
554,357 + ABZR87_RS18725 0.45 +0.2
554,357 + ABZR87_RS18725 0.45 -0.0
554,357 + ABZR87_RS18725 0.45 -0.0
554,357 + ABZR87_RS18725 0.45 +0.3
554,357 + ABZR87_RS18725 0.45 +2.3
554,357 + ABZR87_RS18725 0.45 -1.8
554,358 - ABZR87_RS18725 0.45 +0.5
554,358 - ABZR87_RS18725 0.45 +0.2
554,358 - ABZR87_RS18725 0.45 +1.1
554,358 - ABZR87_RS18725 0.45 +0.5
554,358 - ABZR87_RS18725 0.45 -1.2
554,536 + ABZR87_RS18725 0.59 +0.4
554,537 - ABZR87_RS18725 0.59 +0.2

Or see this region's nucleotide sequence