Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18405

Experiment: no_plant_rhizosphere sample 2; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS18395 and ABZR87_RS18400 are separated by 60 nucleotidesABZR87_RS18400 and ABZR87_RS18405 are separated by 49 nucleotidesABZR87_RS18405 and ABZR87_RS18410 are separated by 81 nucleotides ABZR87_RS18395: ABZR87_RS18395 - lysophospholipid acyltransferase family protein, at 492,847 to 493,725 _RS18395 ABZR87_RS18400: ABZR87_RS18400 - hypothetical protein, at 493,786 to 494,007 _RS18400 ABZR87_RS18405: ABZR87_RS18405 - hypothetical protein, at 494,057 to 494,311 _RS18405 ABZR87_RS18410: ABZR87_RS18410 - hypothetical protein, at 494,393 to 494,626 _RS18410 Position (kb) 494 495Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 493.115 kb on + strand, within ABZR87_RS18395at 493.115 kb on + strand, within ABZR87_RS18395at 493.115 kb on + strand, within ABZR87_RS18395at 493.115 kb on + strand, within ABZR87_RS18395at 493.116 kb on - strand, within ABZR87_RS18395at 493.210 kb on + strand, within ABZR87_RS18395at 493.302 kb on + strand, within ABZR87_RS18395at 493.302 kb on + strand, within ABZR87_RS18395at 493.349 kb on + strand, within ABZR87_RS18395at 493.610 kb on + strand, within ABZR87_RS18395at 493.611 kb on - strand, within ABZR87_RS18395at 493.611 kb on - strand, within ABZR87_RS18395at 493.611 kb on - strand, within ABZR87_RS18395at 493.788 kb on - strandat 493.844 kb on + strand, within ABZR87_RS18400at 493.845 kb on - strand, within ABZR87_RS18400at 494.026 kb on + strandat 494.026 kb on + strandat 494.058 kb on + strandat 494.059 kb on - strandat 494.059 kb on - strandat 494.082 kb on + strandat 494.082 kb on + strandat 494.083 kb on - strand, within ABZR87_RS18405at 494.094 kb on - strand, within ABZR87_RS18405at 494.134 kb on + strand, within ABZR87_RS18405at 494.134 kb on + strand, within ABZR87_RS18405at 494.134 kb on + strand, within ABZR87_RS18405at 494.135 kb on - strand, within ABZR87_RS18405at 494.247 kb on + strand, within ABZR87_RS18405at 494.247 kb on + strand, within ABZR87_RS18405at 494.248 kb on - strand, within ABZR87_RS18405at 494.248 kb on - strand, within ABZR87_RS18405at 494.305 kb on + strandat 494.305 kb on + strandat 494.305 kb on + strandat 494.305 kb on + strandat 494.306 kb on - strandat 494.488 kb on + strand, within ABZR87_RS18410at 494.489 kb on - strand, within ABZR87_RS18410at 494.489 kb on - strand, within ABZR87_RS18410at 494.507 kb on - strand, within ABZR87_RS18410at 494.551 kb on - strand, within ABZR87_RS18410at 494.551 kb on - strand, within ABZR87_RS18410at 494.551 kb on - strand, within ABZR87_RS18410at 494.589 kb on + strand, within ABZR87_RS18410at 494.589 kb on + strand, within ABZR87_RS18410at 494.604 kb on + strandat 494.702 kb on - strandat 494.715 kb on + strandat 494.781 kb on + strandat 494.782 kb on - strandat 494.782 kb on - strandat 494.801 kb on + strandat 494.802 kb on - strandat 494.802 kb on - strandat 494.804 kb on + strandat 494.804 kb on + strandat 494.805 kb on - strandat 494.805 kb on - strandat 494.846 kb on + strandat 494.846 kb on + strandat 494.847 kb on - strandat 494.847 kb on - strandat 494.884 kb on - strandat 494.884 kb on - strandat 494.910 kb on + strandat 494.911 kb on - strandat 494.911 kb on - strandat 494.972 kb on + strandat 494.972 kb on + strandat 494.986 kb on - strandat 495.127 kb on + strandat 495.127 kb on + strandat 495.127 kb on + strandat 495.186 kb on + strandat 495.186 kb on + strandat 495.187 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB
remove
493,115 + ABZR87_RS18395 0.30 +1.2
493,115 + ABZR87_RS18395 0.30 +0.3
493,115 + ABZR87_RS18395 0.30 +0.0
493,115 + ABZR87_RS18395 0.30 +0.1
493,116 - ABZR87_RS18395 0.31 -0.1
493,210 + ABZR87_RS18395 0.41 +0.6
493,302 + ABZR87_RS18395 0.52 -0.7
493,302 + ABZR87_RS18395 0.52 +0.2
493,349 + ABZR87_RS18395 0.57 -0.6
493,610 + ABZR87_RS18395 0.87 -0.2
493,611 - ABZR87_RS18395 0.87 -0.9
493,611 - ABZR87_RS18395 0.87 +0.7
493,611 - ABZR87_RS18395 0.87 +1.2
493,788 - -2.1
493,844 + ABZR87_RS18400 0.26 +1.1
493,845 - ABZR87_RS18400 0.27 -0.8
494,026 + -0.1
494,026 + +1.2
494,058 + -3.2
494,059 - +1.4
494,059 - -0.1
494,082 + +0.8
494,082 + +0.4
494,083 - ABZR87_RS18405 0.10 -1.3
494,094 - ABZR87_RS18405 0.15 +2.0
494,134 + ABZR87_RS18405 0.30 +2.1
494,134 + ABZR87_RS18405 0.30 +0.3
494,134 + ABZR87_RS18405 0.30 +1.4
494,135 - ABZR87_RS18405 0.31 +0.9
494,247 + ABZR87_RS18405 0.75 -0.6
494,247 + ABZR87_RS18405 0.75 -1.0
494,248 - ABZR87_RS18405 0.75 +1.3
494,248 - ABZR87_RS18405 0.75 +0.4
494,305 + -0.4
494,305 + +0.5
494,305 + -1.1
494,305 + -0.5
494,306 - -1.4
494,488 + ABZR87_RS18410 0.41 -0.7
494,489 - ABZR87_RS18410 0.41 +0.9
494,489 - ABZR87_RS18410 0.41 +0.2
494,507 - ABZR87_RS18410 0.49 +1.4
494,551 - ABZR87_RS18410 0.68 +0.9
494,551 - ABZR87_RS18410 0.68 -0.7
494,551 - ABZR87_RS18410 0.68 +1.0
494,589 + ABZR87_RS18410 0.84 +0.7
494,589 + ABZR87_RS18410 0.84 +0.9
494,604 + +0.4
494,702 - -0.6
494,715 + -0.4
494,781 + +1.4
494,782 - +0.2
494,782 - -2.8
494,801 + -0.4
494,802 - -0.3
494,802 - -0.1
494,804 + +0.7
494,804 + +0.5
494,805 - -1.3
494,805 - -3.5
494,846 + -0.3
494,846 + -0.5
494,847 - -1.4
494,847 - +0.1
494,884 - +0.7
494,884 - +0.9
494,910 + -0.5
494,911 - +0.0
494,911 - -0.8
494,972 + +0.8
494,972 + -0.2
494,986 - +0.1
495,127 + -1.1
495,127 + +0.5
495,127 + -0.9
495,186 + +1.4
495,186 + -1.6
495,187 - +0.5

Or see this region's nucleotide sequence