Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18000

Experiment: no_plant_rhizosphere sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17990 and ABZR87_RS17995 are separated by 149 nucleotidesABZR87_RS17995 and ABZR87_RS18000 overlap by 1 nucleotidesABZR87_RS18000 and ABZR87_RS18005 are separated by 75 nucleotides ABZR87_RS17990: ABZR87_RS17990 - chemotaxis response regulator protein-glutamate methylesterase, at 391,517 to 392,638 _RS17990 ABZR87_RS17995: ABZR87_RS17995 - chemotaxis response regulator CheY, at 392,788 to 393,189 _RS17995 ABZR87_RS18000: ABZR87_RS18000 - protein phosphatase CheZ, at 393,189 to 393,857 _RS18000 ABZR87_RS18005: ABZR87_RS18005 - formylglycine-generating enzyme family protein, at 393,933 to 395,036 _RS18005 Position (kb) 393 394Strain fitness (log2 ratio) -3 -2 -1 0 1at 392.261 kb on + strand, within ABZR87_RS17990at 392.262 kb on - strand, within ABZR87_RS17990at 392.262 kb on - strand, within ABZR87_RS17990at 392.312 kb on + strand, within ABZR87_RS17990at 392.312 kb on + strand, within ABZR87_RS17990at 392.313 kb on - strand, within ABZR87_RS17990at 392.313 kb on - strand, within ABZR87_RS17990at 392.313 kb on - strand, within ABZR87_RS17990at 392.313 kb on - strand, within ABZR87_RS17990at 392.313 kb on - strand, within ABZR87_RS17990at 392.483 kb on + strand, within ABZR87_RS17990at 392.483 kb on + strand, within ABZR87_RS17990at 392.484 kb on - strand, within ABZR87_RS17990at 392.484 kb on - strand, within ABZR87_RS17990at 392.484 kb on - strand, within ABZR87_RS17990at 392.484 kb on - strand, within ABZR87_RS17990at 392.519 kb on + strand, within ABZR87_RS17990at 392.637 kb on - strandat 392.655 kb on + strandat 392.655 kb on + strandat 392.656 kb on - strandat 392.656 kb on - strandat 392.730 kb on - strandat 392.766 kb on + strandat 392.854 kb on - strand, within ABZR87_RS17995at 393.126 kb on + strand, within ABZR87_RS17995at 393.127 kb on - strand, within ABZR87_RS17995at 393.378 kb on + strand, within ABZR87_RS18000at 393.379 kb on - strand, within ABZR87_RS18000at 393.379 kb on - strand, within ABZR87_RS18000at 393.379 kb on - strand, within ABZR87_RS18000at 393.379 kb on - strand, within ABZR87_RS18000at 394.168 kb on + strand, within ABZR87_RS18005at 394.169 kb on - strand, within ABZR87_RS18005at 394.169 kb on - strand, within ABZR87_RS18005at 394.191 kb on + strand, within ABZR87_RS18005at 394.191 kb on + strand, within ABZR87_RS18005at 394.191 kb on + strand, within ABZR87_RS18005at 394.210 kb on + strand, within ABZR87_RS18005at 394.210 kb on + strand, within ABZR87_RS18005at 394.210 kb on + strand, within ABZR87_RS18005at 394.210 kb on + strand, within ABZR87_RS18005at 394.210 kb on + strand, within ABZR87_RS18005at 394.234 kb on + strand, within ABZR87_RS18005at 394.235 kb on - strand, within ABZR87_RS18005at 394.235 kb on - strand, within ABZR87_RS18005at 394.307 kb on - strand, within ABZR87_RS18005at 394.307 kb on - strand, within ABZR87_RS18005at 394.307 kb on - strand, within ABZR87_RS18005at 394.432 kb on + strand, within ABZR87_RS18005at 394.432 kb on + strand, within ABZR87_RS18005at 394.432 kb on + strand, within ABZR87_RS18005at 394.552 kb on + strand, within ABZR87_RS18005at 394.552 kb on + strand, within ABZR87_RS18005at 394.553 kb on - strand, within ABZR87_RS18005at 394.553 kb on - strand, within ABZR87_RS18005at 394.630 kb on + strand, within ABZR87_RS18005at 394.722 kb on - strand, within ABZR87_RS18005at 394.754 kb on - strand, within ABZR87_RS18005

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB
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392,261 + ABZR87_RS17990 0.66 -0.2
392,262 - ABZR87_RS17990 0.66 -1.4
392,262 - ABZR87_RS17990 0.66 +0.3
392,312 + ABZR87_RS17990 0.71 -0.1
392,312 + ABZR87_RS17990 0.71 -1.2
392,313 - ABZR87_RS17990 0.71 -0.2
392,313 - ABZR87_RS17990 0.71 +0.2
392,313 - ABZR87_RS17990 0.71 -0.5
392,313 - ABZR87_RS17990 0.71 -0.4
392,313 - ABZR87_RS17990 0.71 -3.3
392,483 + ABZR87_RS17990 0.86 -1.4
392,483 + ABZR87_RS17990 0.86 -1.6
392,484 - ABZR87_RS17990 0.86 -1.3
392,484 - ABZR87_RS17990 0.86 -2.0
392,484 - ABZR87_RS17990 0.86 -2.2
392,484 - ABZR87_RS17990 0.86 -0.2
392,519 + ABZR87_RS17990 0.89 +0.9
392,637 - -0.1
392,655 + +1.7
392,655 + -0.2
392,656 - -0.2
392,656 - +1.3
392,730 - -0.4
392,766 + -0.9
392,854 - ABZR87_RS17995 0.16 -0.4
393,126 + ABZR87_RS17995 0.84 -1.4
393,127 - ABZR87_RS17995 0.84 -1.7
393,378 + ABZR87_RS18000 0.28 -2.4
393,379 - ABZR87_RS18000 0.28 -1.7
393,379 - ABZR87_RS18000 0.28 +0.3
393,379 - ABZR87_RS18000 0.28 -0.3
393,379 - ABZR87_RS18000 0.28 -0.2
394,168 + ABZR87_RS18005 0.21 -0.4
394,169 - ABZR87_RS18005 0.21 -0.1
394,169 - ABZR87_RS18005 0.21 -0.3
394,191 + ABZR87_RS18005 0.23 -1.4
394,191 + ABZR87_RS18005 0.23 +0.6
394,191 + ABZR87_RS18005 0.23 +1.0
394,210 + ABZR87_RS18005 0.25 -2.2
394,210 + ABZR87_RS18005 0.25 +0.3
394,210 + ABZR87_RS18005 0.25 -2.8
394,210 + ABZR87_RS18005 0.25 +0.3
394,210 + ABZR87_RS18005 0.25 +0.2
394,234 + ABZR87_RS18005 0.27 -0.6
394,235 - ABZR87_RS18005 0.27 +0.5
394,235 - ABZR87_RS18005 0.27 +1.3
394,307 - ABZR87_RS18005 0.34 -1.5
394,307 - ABZR87_RS18005 0.34 -2.4
394,307 - ABZR87_RS18005 0.34 +1.4
394,432 + ABZR87_RS18005 0.45 +0.4
394,432 + ABZR87_RS18005 0.45 +0.1
394,432 + ABZR87_RS18005 0.45 -0.3
394,552 + ABZR87_RS18005 0.56 +1.4
394,552 + ABZR87_RS18005 0.56 -1.8
394,553 - ABZR87_RS18005 0.56 -0.3
394,553 - ABZR87_RS18005 0.56 +1.0
394,630 + ABZR87_RS18005 0.63 -0.3
394,722 - ABZR87_RS18005 0.71 +1.4
394,754 - ABZR87_RS18005 0.74 +0.5

Or see this region's nucleotide sequence