Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17610 and ABZR87_RS17615 are separated by 79 nucleotides ABZR87_RS17615 and ABZR87_RS17620 are separated by 208 nucleotides ABZR87_RS17620 and ABZR87_RS17625 are separated by 112 nucleotides ABZR87_RS17625 and ABZR87_RS17630 are separated by 55 nucleotides
ABZR87_RS17610: ABZR87_RS17610 - SulP family inorganic anion transporter, at 315,850 to 317,619
_RS17610
ABZR87_RS17615: ABZR87_RS17615 - hypothetical protein, at 317,699 to 318,250
_RS17615
ABZR87_RS17620: ABZR87_RS17620 - LysR family transcriptional regulator, at 318,459 to 319,397
_RS17620
ABZR87_RS17625: ABZR87_RS17625 - SDR family oxidoreductase, at 319,510 to 320,271
_RS17625
ABZR87_RS17630: ABZR87_RS17630 - alpha/beta hydrolase, at 320,327 to 321,283
_RS17630
Position (kb) 318
319
320 Strain fitness (log2 ratio) -2
-1
0
1
2 at 317.462 kb on + strand at 317.463 kb on - strand at 317.604 kb on - strand at 317.700 kb on + strand at 317.700 kb on + strand at 317.700 kb on + strand at 317.701 kb on - strand at 317.701 kb on - strand at 317.701 kb on - strand at 317.701 kb on - strand at 317.701 kb on - strand at 317.766 kb on + strand, within ABZR87_RS17615 at 317.766 kb on + strand, within ABZR87_RS17615 at 317.766 kb on + strand, within ABZR87_RS17615 at 317.766 kb on + strand, within ABZR87_RS17615 at 317.766 kb on + strand, within ABZR87_RS17615 at 317.766 kb on + strand, within ABZR87_RS17615 at 317.767 kb on - strand, within ABZR87_RS17615 at 317.767 kb on - strand, within ABZR87_RS17615 at 317.767 kb on - strand, within ABZR87_RS17615 at 317.790 kb on + strand, within ABZR87_RS17615 at 317.790 kb on + strand, within ABZR87_RS17615 at 317.790 kb on + strand, within ABZR87_RS17615 at 317.793 kb on + strand, within ABZR87_RS17615 at 317.794 kb on - strand, within ABZR87_RS17615 at 317.794 kb on - strand, within ABZR87_RS17615 at 317.814 kb on + strand, within ABZR87_RS17615 at 317.814 kb on + strand, within ABZR87_RS17615 at 317.815 kb on - strand, within ABZR87_RS17615 at 317.815 kb on - strand, within ABZR87_RS17615 at 317.815 kb on - strand, within ABZR87_RS17615 at 317.815 kb on - strand, within ABZR87_RS17615 at 318.111 kb on + strand, within ABZR87_RS17615 at 318.111 kb on + strand, within ABZR87_RS17615 at 318.111 kb on + strand, within ABZR87_RS17615 at 318.112 kb on - strand, within ABZR87_RS17615 at 318.278 kb on + strand at 318.278 kb on + strand at 318.278 kb on + strand at 318.278 kb on + strand at 318.279 kb on - strand at 318.279 kb on - strand at 318.279 kb on - strand at 318.279 kb on - strand at 318.279 kb on - strand at 318.389 kb on + strand at 318.389 kb on + strand at 318.390 kb on - strand at 318.390 kb on - strand at 318.430 kb on + strand at 318.430 kb on + strand at 318.430 kb on + strand at 318.430 kb on + strand at 318.430 kb on + strand at 318.431 kb on - strand at 318.431 kb on - strand at 318.431 kb on - strand at 318.513 kb on + strand at 318.513 kb on + strand at 318.514 kb on - strand at 318.514 kb on - strand at 318.592 kb on + strand, within ABZR87_RS17620 at 318.592 kb on + strand, within ABZR87_RS17620 at 318.592 kb on + strand, within ABZR87_RS17620 at 318.592 kb on + strand, within ABZR87_RS17620 at 318.593 kb on - strand, within ABZR87_RS17620 at 318.593 kb on - strand, within ABZR87_RS17620 at 318.593 kb on - strand, within ABZR87_RS17620 at 319.435 kb on - strand at 319.969 kb on + strand, within ABZR87_RS17625 at 319.969 kb on + strand, within ABZR87_RS17625 at 320.084 kb on - strand, within ABZR87_RS17625 at 320.084 kb on - strand, within ABZR87_RS17625 at 320.269 kb on + strand at 320.285 kb on - strand at 320.285 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 317,462 + -0.6 317,463 - -0.5 317,604 - +1.5 317,700 + -0.9 317,700 + +1.6 317,700 + +1.9 317,701 - -0.6 317,701 - -0.7 317,701 - +0.1 317,701 - +0.3 317,701 - +1.2 317,766 + ABZR87_RS17615 0.12 -0.3 317,766 + ABZR87_RS17615 0.12 +0.7 317,766 + ABZR87_RS17615 0.12 -1.0 317,766 + ABZR87_RS17615 0.12 -0.8 317,766 + ABZR87_RS17615 0.12 -0.1 317,766 + ABZR87_RS17615 0.12 -0.7 317,767 - ABZR87_RS17615 0.12 -0.1 317,767 - ABZR87_RS17615 0.12 -2.3 317,767 - ABZR87_RS17615 0.12 +0.5 317,790 + ABZR87_RS17615 0.16 +0.9 317,790 + ABZR87_RS17615 0.16 -0.4 317,790 + ABZR87_RS17615 0.16 -1.6 317,793 + ABZR87_RS17615 0.17 -0.7 317,794 - ABZR87_RS17615 0.17 -0.4 317,794 - ABZR87_RS17615 0.17 -0.5 317,814 + ABZR87_RS17615 0.21 +0.4 317,814 + ABZR87_RS17615 0.21 +0.2 317,815 - ABZR87_RS17615 0.21 +0.6 317,815 - ABZR87_RS17615 0.21 +0.7 317,815 - ABZR87_RS17615 0.21 +0.6 317,815 - ABZR87_RS17615 0.21 -0.2 318,111 + ABZR87_RS17615 0.75 +1.1 318,111 + ABZR87_RS17615 0.75 +0.4 318,111 + ABZR87_RS17615 0.75 -1.6 318,112 - ABZR87_RS17615 0.75 +0.2 318,278 + +0.4 318,278 + -1.3 318,278 + -0.1 318,278 + -0.3 318,279 - -0.6 318,279 - +0.4 318,279 - +0.8 318,279 - +0.7 318,279 - -0.7 318,389 + +0.1 318,389 + -0.6 318,390 - +0.4 318,390 - -1.0 318,430 + +0.1 318,430 + +0.2 318,430 + +1.6 318,430 + +0.1 318,430 + +0.1 318,431 - +1.8 318,431 - +1.5 318,431 - +1.1 318,513 + -0.2 318,513 + -0.7 318,514 - -0.4 318,514 - -0.5 318,592 + ABZR87_RS17620 0.14 -0.8 318,592 + ABZR87_RS17620 0.14 +2.3 318,592 + ABZR87_RS17620 0.14 -0.5 318,592 + ABZR87_RS17620 0.14 +0.0 318,593 - ABZR87_RS17620 0.14 +0.3 318,593 - ABZR87_RS17620 0.14 -2.3 318,593 - ABZR87_RS17620 0.14 -0.5 319,435 - -0.3 319,969 + ABZR87_RS17625 0.60 -0.4 319,969 + ABZR87_RS17625 0.60 -1.8 320,084 - ABZR87_RS17625 0.75 +0.6 320,084 - ABZR87_RS17625 0.75 -0.2 320,269 + -2.5 320,285 - -2.4 320,285 - +0.3
Or see this region's nucleotide sequence