Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17400 and ABZR87_RS17405 are separated by 19 nucleotides ABZR87_RS17405 and ABZR87_RS17410 are separated by 78 nucleotides
ABZR87_RS17400: ABZR87_RS17400 - amidohydrolase family protein, at 262,109 to 263,497
_RS17400
ABZR87_RS17405: ABZR87_RS17405 - nucleobase:cation symporter-2 family protein, at 263,517 to 264,860
_RS17405
ABZR87_RS17410: ABZR87_RS17410 - GTP-binding protein, at 264,939 to 266,069
_RS17410
Position (kb) 263
264
265 Strain fitness (log2 ratio) -2
-1
0
1 at 262.726 kb on - strand, within ABZR87_RS17400 at 262.726 kb on - strand, within ABZR87_RS17400 at 262.749 kb on + strand, within ABZR87_RS17400 at 262.749 kb on + strand, within ABZR87_RS17400 at 262.749 kb on + strand, within ABZR87_RS17400 at 262.749 kb on + strand, within ABZR87_RS17400 at 262.749 kb on + strand, within ABZR87_RS17400 at 262.749 kb on + strand, within ABZR87_RS17400 at 262.750 kb on - strand, within ABZR87_RS17400 at 262.750 kb on - strand, within ABZR87_RS17400 at 262.750 kb on - strand, within ABZR87_RS17400 at 262.774 kb on + strand, within ABZR87_RS17400 at 262.775 kb on - strand, within ABZR87_RS17400 at 262.775 kb on - strand, within ABZR87_RS17400 at 262.903 kb on - strand, within ABZR87_RS17400 at 263.094 kb on + strand, within ABZR87_RS17400 at 263.095 kb on - strand, within ABZR87_RS17400 at 263.101 kb on - strand, within ABZR87_RS17400 at 263.534 kb on + strand at 263.731 kb on + strand, within ABZR87_RS17405 at 263.732 kb on - strand, within ABZR87_RS17405 at 263.747 kb on - strand, within ABZR87_RS17405 at 263.747 kb on - strand, within ABZR87_RS17405 at 264.555 kb on + strand, within ABZR87_RS17405 at 264.775 kb on + strand at 264.775 kb on + strand at 264.788 kb on + strand at 264.788 kb on + strand at 264.788 kb on + strand at 264.788 kb on + strand at 264.846 kb on + strand at 264.847 kb on - strand at 264.871 kb on + strand at 264.871 kb on + strand at 264.872 kb on - strand at 265.447 kb on + strand, within ABZR87_RS17410 at 265.448 kb on - strand, within ABZR87_RS17410 at 265.550 kb on + strand, within ABZR87_RS17410 at 265.852 kb on + strand, within ABZR87_RS17410 at 265.852 kb on + strand, within ABZR87_RS17410 at 265.853 kb on - strand, within ABZR87_RS17410
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 262,726 - ABZR87_RS17400 0.44 +0.2 262,726 - ABZR87_RS17400 0.44 +0.4 262,749 + ABZR87_RS17400 0.46 +0.2 262,749 + ABZR87_RS17400 0.46 -1.4 262,749 + ABZR87_RS17400 0.46 +1.1 262,749 + ABZR87_RS17400 0.46 +0.5 262,749 + ABZR87_RS17400 0.46 +0.9 262,749 + ABZR87_RS17400 0.46 +0.9 262,750 - ABZR87_RS17400 0.46 -2.7 262,750 - ABZR87_RS17400 0.46 +0.6 262,750 - ABZR87_RS17400 0.46 -0.3 262,774 + ABZR87_RS17400 0.48 +1.2 262,775 - ABZR87_RS17400 0.48 -2.2 262,775 - ABZR87_RS17400 0.48 -1.3 262,903 - ABZR87_RS17400 0.57 -0.2 263,094 + ABZR87_RS17400 0.71 -1.7 263,095 - ABZR87_RS17400 0.71 +0.3 263,101 - ABZR87_RS17400 0.71 +0.3 263,534 + -0.8 263,731 + ABZR87_RS17405 0.16 +0.4 263,732 - ABZR87_RS17405 0.16 -0.1 263,747 - ABZR87_RS17405 0.17 +1.2 263,747 - ABZR87_RS17405 0.17 +0.2 264,555 + ABZR87_RS17405 0.77 -1.3 264,775 + -1.4 264,775 + -0.9 264,788 + +0.4 264,788 + +0.1 264,788 + -0.7 264,788 + -0.9 264,846 + +0.6 264,847 - +1.4 264,871 + -0.8 264,871 + +0.6 264,872 - -0.8 265,447 + ABZR87_RS17410 0.45 -2.5 265,448 - ABZR87_RS17410 0.45 -1.5 265,550 + ABZR87_RS17410 0.54 -0.1 265,852 + ABZR87_RS17410 0.81 -0.5 265,852 + ABZR87_RS17410 0.81 +0.2 265,853 - ABZR87_RS17410 0.81 -0.9
Or see this region's nucleotide sequence