Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16605 and ABZR87_RS16610 are separated by 779 nucleotides ABZR87_RS16610 and ABZR87_RS16615 are separated by 306 nucleotides
ABZR87_RS16605: ABZR87_RS16605 - PhnD/SsuA/transferrin family substrate-binding protein, at 74,083 to 74,910
_RS16605
ABZR87_RS16610: ABZR87_RS16610 - hypothetical protein, at 75,690 to 76,058
_RS16610
ABZR87_RS16615: ABZR87_RS16615 - response regulator transcription factor, at 76,365 to 77,102
_RS16615
Position (kb) 75
76
77 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 75.267 kb on + strand at 75.267 kb on + strand at 75.267 kb on + strand at 75.268 kb on - strand at 75.268 kb on - strand at 75.450 kb on + strand at 75.450 kb on + strand at 75.450 kb on + strand at 75.451 kb on - strand at 75.451 kb on - strand at 75.451 kb on - strand at 75.451 kb on - strand at 75.451 kb on - strand at 75.452 kb on + strand at 75.452 kb on + strand at 75.453 kb on - strand at 75.453 kb on - strand at 75.453 kb on - strand at 75.555 kb on + strand at 75.555 kb on + strand at 75.556 kb on - strand at 75.556 kb on - strand at 75.556 kb on - strand at 75.591 kb on - strand at 75.617 kb on - strand at 75.617 kb on - strand at 75.617 kb on - strand at 75.695 kb on + strand at 75.696 kb on - strand at 75.696 kb on - strand at 75.723 kb on + strand at 75.723 kb on + strand at 75.801 kb on + strand, within ABZR87_RS16610 at 75.801 kb on + strand, within ABZR87_RS16610 at 75.801 kb on + strand, within ABZR87_RS16610 at 75.801 kb on + strand, within ABZR87_RS16610 at 75.816 kb on - strand, within ABZR87_RS16610 at 75.831 kb on + strand, within ABZR87_RS16610 at 75.832 kb on - strand, within ABZR87_RS16610 at 75.832 kb on - strand, within ABZR87_RS16610 at 75.969 kb on + strand, within ABZR87_RS16610 at 75.970 kb on - strand, within ABZR87_RS16610 at 75.970 kb on - strand, within ABZR87_RS16610 at 75.970 kb on - strand, within ABZR87_RS16610 at 76.048 kb on - strand at 76.252 kb on + strand at 76.252 kb on + strand at 76.252 kb on + strand at 76.366 kb on + strand at 76.367 kb on - strand at 76.447 kb on + strand, within ABZR87_RS16615 at 76.447 kb on + strand, within ABZR87_RS16615 at 76.447 kb on + strand, within ABZR87_RS16615 at 76.447 kb on + strand, within ABZR87_RS16615 at 76.447 kb on + strand, within ABZR87_RS16615 at 76.448 kb on - strand, within ABZR87_RS16615 at 76.448 kb on - strand, within ABZR87_RS16615 at 76.507 kb on + strand, within ABZR87_RS16615 at 76.507 kb on + strand, within ABZR87_RS16615 at 76.507 kb on + strand, within ABZR87_RS16615 at 76.507 kb on + strand, within ABZR87_RS16615 at 76.507 kb on + strand, within ABZR87_RS16615 at 76.507 kb on + strand, within ABZR87_RS16615 at 76.508 kb on - strand, within ABZR87_RS16615 at 76.508 kb on - strand, within ABZR87_RS16615 at 76.508 kb on - strand, within ABZR87_RS16615 at 76.508 kb on - strand, within ABZR87_RS16615 at 76.508 kb on - strand, within ABZR87_RS16615 at 76.508 kb on - strand, within ABZR87_RS16615 at 76.508 kb on - strand, within ABZR87_RS16615 at 76.508 kb on - strand, within ABZR87_RS16615 at 76.696 kb on + strand, within ABZR87_RS16615 at 76.934 kb on + strand, within ABZR87_RS16615
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 75,267 + +0.3 75,267 + -0.9 75,267 + -0.8 75,268 - -0.4 75,268 - -2.9 75,450 + +0.5 75,450 + +0.8 75,450 + -0.4 75,451 - -0.9 75,451 - +1.9 75,451 - +1.2 75,451 - -1.7 75,451 - -0.0 75,452 + -2.2 75,452 + +0.7 75,453 - -3.0 75,453 - +0.3 75,453 - +0.1 75,555 + +1.7 75,555 + +0.1 75,556 - +0.4 75,556 - +2.2 75,556 - -2.0 75,591 - +0.5 75,617 - -1.3 75,617 - +1.0 75,617 - -0.9 75,695 + -2.0 75,696 - -0.2 75,696 - -1.8 75,723 + -0.7 75,723 + -0.1 75,801 + ABZR87_RS16610 0.30 +0.1 75,801 + ABZR87_RS16610 0.30 -0.9 75,801 + ABZR87_RS16610 0.30 -0.0 75,801 + ABZR87_RS16610 0.30 -0.7 75,816 - ABZR87_RS16610 0.34 +0.7 75,831 + ABZR87_RS16610 0.38 -0.7 75,832 - ABZR87_RS16610 0.38 +0.4 75,832 - ABZR87_RS16610 0.38 +0.0 75,969 + ABZR87_RS16610 0.76 -2.7 75,970 - ABZR87_RS16610 0.76 -0.5 75,970 - ABZR87_RS16610 0.76 +0.9 75,970 - ABZR87_RS16610 0.76 +0.6 76,048 - -0.5 76,252 + +0.3 76,252 + -0.7 76,252 + -1.1 76,366 + -0.1 76,367 - -1.8 76,447 + ABZR87_RS16615 0.11 -0.8 76,447 + ABZR87_RS16615 0.11 +0.3 76,447 + ABZR87_RS16615 0.11 +1.4 76,447 + ABZR87_RS16615 0.11 -1.9 76,447 + ABZR87_RS16615 0.11 -1.3 76,448 - ABZR87_RS16615 0.11 -0.3 76,448 - ABZR87_RS16615 0.11 +2.1 76,507 + ABZR87_RS16615 0.19 +0.9 76,507 + ABZR87_RS16615 0.19 +0.2 76,507 + ABZR87_RS16615 0.19 -1.1 76,507 + ABZR87_RS16615 0.19 -0.2 76,507 + ABZR87_RS16615 0.19 -0.2 76,507 + ABZR87_RS16615 0.19 +0.2 76,508 - ABZR87_RS16615 0.19 +2.0 76,508 - ABZR87_RS16615 0.19 +0.8 76,508 - ABZR87_RS16615 0.19 -1.3 76,508 - ABZR87_RS16615 0.19 -1.5 76,508 - ABZR87_RS16615 0.19 -0.2 76,508 - ABZR87_RS16615 0.19 -0.3 76,508 - ABZR87_RS16615 0.19 -0.5 76,508 - ABZR87_RS16615 0.19 -1.2 76,696 + ABZR87_RS16615 0.45 -0.0 76,934 + ABZR87_RS16615 0.77 +0.9
Or see this region's nucleotide sequence