Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15120

Experiment: no_plant_rhizosphere sample 2; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no_plant_rhizosphere sample 2; outgrowth in LB
3,191,084	-				+0.3
3,191,161	+				-1.3
3,191,176	-				-0.1
3,191,182	+				-1.5
3,191,182	+				+1.4
3,191,183	-				-1.6
3,191,183	-				-0.4
3,191,183	-				-1.9
3,191,183	-				-0.2
3,191,183	-				-1.4
3,191,196	+				+0.2
3,191,196	+				+1.8
3,191,197	-				+0.2
3,191,197	-				+0.2
3,191,197	-				-1.6
3,191,197	-				-0.5
3,191,197	-				-0.1
3,191,201	+				-1.4
3,191,201	+				-1.3
3,191,202	-				+0.1
3,191,233	+				-1.1
3,191,234	-				+1.0
3,191,234	-				-0.6
3,191,234	-				+0.4
3,191,237	+				+1.9
3,191,237	+				-1.5
3,191,237	+				-0.4
3,191,237	+				-0.3
3,191,237	+				-1.2
3,191,237	+				-0.5
3,191,237	+				+0.4
3,191,237	+				-0.3
3,191,237	+				-0.1
3,191,238	-				-0.1
3,191,238	-				+0.4
3,191,238	-				+0.4
3,191,238	-				+1.4
3,191,238	-				+1.3
3,191,238	-				+0.6
3,191,238	-				+0.3
3,191,238	-				-0.1
3,191,238	-				-1.0
3,191,238	-				-0.7
3,191,238	-				+0.4
3,191,356	+		ABZR87_RS15115	0.19	-0.2
3,191,357	-		ABZR87_RS15115	0.19	+0.0
3,191,357	-		ABZR87_RS15115	0.19	+0.2
3,191,357	-		ABZR87_RS15115	0.19	-0.3
3,191,413	+		ABZR87_RS15115	0.27	+0.0
3,191,455	+		ABZR87_RS15115	0.33	-0.8
3,191,461	+		ABZR87_RS15115	0.34	+0.1
3,191,461	+		ABZR87_RS15115	0.34	+0.4
3,191,461	+		ABZR87_RS15115	0.34	+0.6
3,191,461	+		ABZR87_RS15115	0.34	-1.2
3,191,462	-		ABZR87_RS15115	0.34	+0.2
3,191,491	+		ABZR87_RS15115	0.39	+0.8
3,191,491	+		ABZR87_RS15115	0.39	-1.7
3,191,492	-		ABZR87_RS15115	0.39	-1.1
3,191,492	-		ABZR87_RS15115	0.39	-1.1
3,191,560	+		ABZR87_RS15115	0.49	+0.5
3,191,614	+		ABZR87_RS15115	0.57	+0.2
3,191,632	+		ABZR87_RS15115	0.60	+0.3
3,191,632	+		ABZR87_RS15115	0.60	-2.2
3,191,632	+		ABZR87_RS15115	0.60	-0.9
3,191,633	-		ABZR87_RS15115	0.60	+0.1
3,191,633	-		ABZR87_RS15115	0.60	+0.2
3,191,633	-		ABZR87_RS15115	0.60	+0.3
3,191,633	-		ABZR87_RS15115	0.60	+0.1
3,191,633	-		ABZR87_RS15115	0.60	-0.2
3,191,701	+		ABZR87_RS15115	0.70	+0.7
3,191,702	-		ABZR87_RS15115	0.70	-2.3
3,191,702	-		ABZR87_RS15115	0.70	-0.6
3,191,702	-		ABZR87_RS15115	0.70	-0.6
3,191,702	-		ABZR87_RS15115	0.70	-0.2
3,191,702	-		ABZR87_RS15115	0.70	+0.1
3,191,752	+		ABZR87_RS15115	0.78	-2.2
3,191,752	+		ABZR87_RS15115	0.78	+1.6
3,191,752	+		ABZR87_RS15115	0.78	+0.8
3,191,752	+		ABZR87_RS15115	0.78	-0.8
3,191,900	+				+0.8
3,191,900	+				-0.6
3,191,901	-				-2.4
3,191,969	-				-0.6
3,192,015	+				+0.1
3,192,015	+				-1.3
3,192,015	+				-1.1
3,192,015	+				-0.6
3,192,015	+				+0.5
3,192,016	-				-0.1
3,192,016	-				-0.0
3,192,016	-				-1.9
3,192,016	-				+1.2
3,192,038	+				-0.0
3,192,038	+				-0.1
3,192,038	+				+0.1
3,192,039	-				+0.5
3,192,049	+				-0.7
3,192,050	-				+0.8
3,192,085	-				+0.7
3,192,096	+				+0.2
3,192,096	+				-1.5
3,192,097	-				+1.4
3,192,097	-				+0.8
3,192,357	+		ABZR87_RS15120	0.11	+0.5
3,192,357	+		ABZR87_RS15120	0.11	+0.4
3,192,358	-		ABZR87_RS15120	0.11	+0.6
3,192,396	+		ABZR87_RS15120	0.13	+1.2
3,192,396	+		ABZR87_RS15120	0.13	+0.5
3,192,456	+		ABZR87_RS15120	0.15	+1.7
3,192,456	+		ABZR87_RS15120	0.15	+1.2
3,192,456	+		ABZR87_RS15120	0.15	+0.3
3,192,456	+		ABZR87_RS15120	0.15	+0.4
3,192,490	-		ABZR87_RS15120	0.16	-0.8
3,192,490	-		ABZR87_RS15120	0.16	-1.9
3,192,490	-		ABZR87_RS15120	0.16	-0.2
3,192,621	+		ABZR87_RS15120	0.21	-0.8
3,192,621	+		ABZR87_RS15120	0.21	+1.4
3,192,622	-		ABZR87_RS15120	0.21	+1.5
3,192,622	-		ABZR87_RS15120	0.21	+0.8
3,192,622	-		ABZR87_RS15120	0.21	-0.1
3,192,891	+		ABZR87_RS15120	0.31	+0.5
3,192,891	+		ABZR87_RS15120	0.31	-0.1
3,192,891	+		ABZR87_RS15120	0.31	+3.0
3,192,892	-		ABZR87_RS15120	0.31	+0.5
3,192,892	-		ABZR87_RS15120	0.31	-0.4
3,192,892	-		ABZR87_RS15120	0.31	+1.0
3,192,963	+		ABZR87_RS15120	0.33	-0.6
3,192,964	-		ABZR87_RS15120	0.34	-0.7
3,192,964	-		ABZR87_RS15120	0.34	-0.8
3,193,219	-		ABZR87_RS15120	0.43	+0.2
3,193,219	-		ABZR87_RS15120	0.43	-0.3
3,193,239	+		ABZR87_RS15120	0.44	-3.0
3,193,239	+		ABZR87_RS15120	0.44	+0.2
3,193,239	+		ABZR87_RS15120	0.44	-0.5
3,193,239	+		ABZR87_RS15120	0.44	+0.1
3,193,240	-		ABZR87_RS15120	0.44	+0.6
3,193,240	-		ABZR87_RS15120	0.44	+1.1
3,193,240	-		ABZR87_RS15120	0.44	+0.8
3,193,255	-		ABZR87_RS15120	0.44	-1.2
3,193,284	+		ABZR87_RS15120	0.45	+1.7
3,193,284	+		ABZR87_RS15120	0.45	+0.4
3,193,284	+		ABZR87_RS15120	0.45	+0.8
3,193,284	+		ABZR87_RS15120	0.45	-0.4
3,193,285	-		ABZR87_RS15120	0.45	-0.3
3,193,332	+		ABZR87_RS15120	0.47	-0.4
3,193,431	+		ABZR87_RS15120	0.51	+1.8
3,193,432	-		ABZR87_RS15120	0.51	-1.6
3,193,494	+		ABZR87_RS15120	0.53	+0.3
3,193,495	-		ABZR87_RS15120	0.53	-1.0
3,193,771	-		ABZR87_RS15120	0.63	+0.7
3,193,773	+		ABZR87_RS15120	0.63	-0.4
3,193,773	+		ABZR87_RS15120	0.63	-0.5
3,193,773	+		ABZR87_RS15120	0.63	-1.6
3,193,773	+		ABZR87_RS15120	0.63	-0.5
3,193,773	+		ABZR87_RS15120	0.63	-1.7
3,193,774	-		ABZR87_RS15120	0.63	+0.4
3,193,774	-		ABZR87_RS15120	0.63	+0.2
3,193,779	+		ABZR87_RS15120	0.64	+0.6
3,193,779	+		ABZR87_RS15120	0.64	-0.0
3,193,781	+		ABZR87_RS15120	0.64	+0.2
3,193,781	+		ABZR87_RS15120	0.64	+1.2
3,193,781	+		ABZR87_RS15120	0.64	+0.1
3,193,782	-		ABZR87_RS15120	0.64	+0.8
3,193,782	-		ABZR87_RS15120	0.64	+1.4
3,193,782	-		ABZR87_RS15120	0.64	+1.0
3,193,782	-		ABZR87_RS15120	0.64	+0.3
3,194,013	+		ABZR87_RS15120	0.72	-0.3
3,194,013	+		ABZR87_RS15120	0.72	+0.3
3,194,013	+		ABZR87_RS15120	0.72	+0.2
3,194,013	+		ABZR87_RS15120	0.72	+0.3
3,194,014	-		ABZR87_RS15120	0.72	+0.2
3,194,014	-		ABZR87_RS15120	0.72	-0.7
3,194,205	+		ABZR87_RS15120	0.79	-0.2
3,194,213	-		ABZR87_RS15120	0.80	+0.6
3,194,213	-		ABZR87_RS15120	0.80	+0.5
3,194,213	-		ABZR87_RS15120	0.80	-1.2
3,194,256	+		ABZR87_RS15120	0.81	+0.2
3,194,256	+		ABZR87_RS15120	0.81	+0.4
3,194,256	+		ABZR87_RS15120	0.81	-1.4
3,194,256	+		ABZR87_RS15120	0.81	+1.9
3,194,256	+		ABZR87_RS15120	0.81	+0.4
3,194,257	-		ABZR87_RS15120	0.81	+1.3
3,194,257	-		ABZR87_RS15120	0.81	+0.2
3,194,257	-		ABZR87_RS15120	0.81	+1.3
3,194,257	-		ABZR87_RS15120	0.81	+0.6
3,194,257	-		ABZR87_RS15120	0.81	+0.7
3,194,316	+		ABZR87_RS15120	0.83	-0.7
3,194,316	+		ABZR87_RS15120	0.83	-0.0
3,194,316	+		ABZR87_RS15120	0.83	-2.5
3,194,317	-		ABZR87_RS15120	0.83	-0.3
3,194,317	-		ABZR87_RS15120	0.83	+1.1
3,194,317	-		ABZR87_RS15120	0.83	-1.6
3,194,317	-		ABZR87_RS15120	0.83	+0.5
3,194,317	-		ABZR87_RS15120	0.83	-0.4
3,194,317	-		ABZR87_RS15120	0.83	+0.7
3,194,317	-		ABZR87_RS15120	0.83	+0.4
3,194,317	-		ABZR87_RS15120	0.83	-2.1
3,194,352	+		ABZR87_RS15120	0.85	+2.8
3,194,450	-		ABZR87_RS15120	0.88	+1.0
3,194,450	-		ABZR87_RS15120	0.88	+1.2
3,194,661	+				-2.3
3,194,661	+				-0.8
3,194,661	+				+0.2
3,194,782	+				-2.3
3,194,783	-				+0.8
3,194,787	+				+1.6
3,194,788	-				-1.8