Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS12920

Experiment: no_plant_rhizosphere sample 2; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no_plant_rhizosphere sample 2; outgrowth in LB
2,748,575	+				+0.0
2,748,575	+				-0.4
2,748,575	+				-0.4
2,748,575	+				-0.4
2,748,576	-				+0.3
2,748,576	-				-3.2
2,748,578	-				-0.1
2,748,578	-				-0.0
2,748,584	+				+0.5
2,748,597	+				-0.9
2,748,597	+				+1.6
2,748,678	+				+0.7
2,748,678	+				-0.2
2,748,678	+				-1.2
2,748,678	+				+0.7
2,748,678	+				-1.0
2,748,679	-				-1.6
2,748,828	-				-0.5
2,748,844	+				+1.1
2,748,844	+				+0.2
2,748,844	+				+0.4
2,748,844	+				-1.5
2,748,844	+				+0.3
2,748,845	-				-2.6
2,748,845	-				-0.2
2,748,845	-				-1.1
2,748,845	-				+0.3
2,748,845	-				+1.3
2,748,845	-				+0.0
2,748,845	-				+0.8
2,748,856	+				+0.7
2,748,866	+				+2.5
2,748,867	-				-0.7
2,748,867	-				-0.7
2,748,867	-				+0.7
2,748,867	-				-0.7
2,748,867	-				+0.6
2,748,897	+				+1.8
2,748,897	+				-0.6
2,748,898	-				+0.7
2,748,898	-				-0.4
2,748,898	-				-0.9
2,748,932	-				+0.2
2,748,932	-				+1.2
2,748,998	+				+0.1
2,749,267	+		ABZR87_RS12915	0.59	+0.6
2,749,278	+		ABZR87_RS12915	0.61	-2.1
2,749,278	+		ABZR87_RS12915	0.61	-0.0
2,749,278	+		ABZR87_RS12915	0.61	+0.4
2,749,278	+		ABZR87_RS12915	0.61	-0.1
2,749,278	+		ABZR87_RS12915	0.61	-1.2
2,749,278	+		ABZR87_RS12915	0.61	+0.8
2,749,278	+		ABZR87_RS12915	0.61	+1.6
2,749,278	+		ABZR87_RS12915	0.61	+1.1
2,749,278	+		ABZR87_RS12915	0.61	-1.0
2,749,279	-		ABZR87_RS12915	0.62	+0.5
2,749,279	-		ABZR87_RS12915	0.62	-0.5
2,749,279	-		ABZR87_RS12915	0.62	-1.2
2,749,279	-		ABZR87_RS12915	0.62	+0.5
2,749,279	-		ABZR87_RS12915	0.62	+0.3
2,749,279	-		ABZR87_RS12915	0.62	-0.5
2,749,280	-		ABZR87_RS12915	0.62	+0.0
2,749,283	+		ABZR87_RS12915	0.62	-0.2
2,749,283	+		ABZR87_RS12915	0.62	-0.8
2,749,283	+		ABZR87_RS12915	0.62	+0.7
2,749,283	+		ABZR87_RS12915	0.62	+0.4
2,749,283	+		ABZR87_RS12915	0.62	+1.0
2,749,283	+		ABZR87_RS12915	0.62	+0.8
2,749,283	+		ABZR87_RS12915	0.62	+0.5
2,749,284	-		ABZR87_RS12915	0.62	+0.7
2,749,284	-		ABZR87_RS12915	0.62	-0.4
2,749,284	-		ABZR87_RS12915	0.62	+0.2
2,749,284	-		ABZR87_RS12915	0.62	+1.6
2,749,284	-		ABZR87_RS12915	0.62	+0.1
2,749,284	-		ABZR87_RS12915	0.62	-0.0
2,749,284	-		ABZR87_RS12915	0.62	+0.9
2,749,284	-		ABZR87_RS12915	0.62	-0.0
2,749,284	-		ABZR87_RS12915	0.62	-0.2
2,749,284	-		ABZR87_RS12915	0.62	-1.1
2,749,284	-		ABZR87_RS12915	0.62	-1.5
2,749,284	-		ABZR87_RS12915	0.62	-0.2
2,749,284	-		ABZR87_RS12915	0.62	-0.4
2,749,287	+		ABZR87_RS12915	0.63	-3.3
2,749,313	+		ABZR87_RS12915	0.68	-0.5
2,749,314	-		ABZR87_RS12915	0.68	+1.8
2,749,314	-		ABZR87_RS12915	0.68	-0.9
2,749,314	-		ABZR87_RS12915	0.68	+0.6
2,749,389	+		ABZR87_RS12915	0.82	+0.6
2,749,422	+		ABZR87_RS12915	0.89	-1.8
2,749,422	+		ABZR87_RS12915	0.89	-1.1
2,749,453	-				-1.3
2,749,483	+				-0.9
2,749,483	+				-2.2
2,749,483	+				-0.4
2,749,483	+				-0.4
2,749,483	+				+0.2
2,749,483	+				-0.3
2,749,483	+				-1.1
2,749,483	+				-0.1
2,749,483	+				-1.3
2,749,483	+				+1.1
2,749,483	+				-0.9
2,749,484	-				-1.2
2,749,484	-				+0.6
2,749,484	-				+0.3
2,749,484	-				+0.5
2,749,484	-				-0.1
2,749,484	-				+0.6
2,749,484	-				-1.2
2,749,484	-				+0.5
2,749,484	-				+0.2
2,749,484	-				-1.8
2,749,484	-				-1.3
2,749,484	-				+0.0
2,749,484	-				+0.2
2,749,499	-				-0.9
2,749,556	-				-0.4
2,749,563	+				+0.5
2,749,563	+				+0.6
2,749,611	+		ABZR87_RS12920	0.11	+1.1
2,749,611	+		ABZR87_RS12920	0.11	+0.4
2,749,611	+		ABZR87_RS12920	0.11	-0.0
2,749,612	-		ABZR87_RS12920	0.11	-1.0
2,749,612	-		ABZR87_RS12920	0.11	+0.1
2,749,612	-		ABZR87_RS12920	0.11	+0.6
2,749,612	-		ABZR87_RS12920	0.11	-0.9
2,749,612	-		ABZR87_RS12920	0.11	+1.6
2,749,612	-		ABZR87_RS12920	0.11	+1.3
2,749,920	+		ABZR87_RS12920	0.44	+4.3
2,749,921	-		ABZR87_RS12920	0.44	+0.9
2,749,986	+		ABZR87_RS12920	0.51	+1.1
2,750,019	+		ABZR87_RS12920	0.54	-0.0
2,750,020	-		ABZR87_RS12920	0.54	-0.0
2,750,020	-		ABZR87_RS12920	0.54	+1.3
2,750,031	+		ABZR87_RS12920	0.55	-1.5
2,750,043	+		ABZR87_RS12920	0.57	+1.2
2,750,043	+		ABZR87_RS12920	0.57	+0.8
2,750,043	+		ABZR87_RS12920	0.57	-1.0
2,750,043	+		ABZR87_RS12920	0.57	+0.2
2,750,043	+		ABZR87_RS12920	0.57	+0.3
2,750,043	+		ABZR87_RS12920	0.57	-0.7
2,750,044	-		ABZR87_RS12920	0.57	+0.3
2,750,088	+		ABZR87_RS12920	0.62	+0.6
2,750,107	+		ABZR87_RS12920	0.64	-2.1
2,750,127	+		ABZR87_RS12920	0.66	-0.4
2,750,389	+				-2.1
2,750,389	+				-0.7
2,750,389	+				+0.7
2,750,389	+				-1.8
2,750,390	-				-2.5
2,750,390	-				+1.1
2,750,390	-				-1.4
2,750,421	+				+1.5
2,750,421	+				+0.3
2,750,422	-				-0.5
2,750,422	-				-0.8
2,750,424	+				+1.1
2,750,424	+				-1.6
2,750,424	+				-0.8
2,750,424	+				-0.3
2,750,425	-				-0.0
2,750,425	-				+1.1
2,750,513	+				-1.6
2,750,514	-				-0.3
2,750,514	-				+3.2
2,750,514	-				-0.6
2,750,514	-				+2.2
2,750,576	+				+0.7
2,750,593	+				-0.6
2,750,594	-				-1.1
2,750,594	-				-2.2
2,750,662	-		ABZR87_RS12925	0.23	-1.0
2,750,679	+		ABZR87_RS12925	0.27	+1.0
2,750,688	+		ABZR87_RS12925	0.29	+0.6
2,750,688	+		ABZR87_RS12925	0.29	+0.1
2,750,688	+		ABZR87_RS12925	0.29	-1.1
2,750,688	+		ABZR87_RS12925	0.29	-0.4
2,750,688	+		ABZR87_RS12925	0.29	-1.3
2,750,688	+		ABZR87_RS12925	0.29	+0.1
2,750,688	+		ABZR87_RS12925	0.29	-0.4
2,750,750	+		ABZR87_RS12925	0.43	-0.3
2,750,751	-		ABZR87_RS12925	0.43	-0.3
2,750,785	+		ABZR87_RS12925	0.51	-0.2
2,750,785	+		ABZR87_RS12925	0.51	-1.8
2,750,785	+		ABZR87_RS12925	0.51	+0.4
2,750,786	-		ABZR87_RS12925	0.51	+1.3
2,750,786	-		ABZR87_RS12925	0.51	+1.1
2,750,829	+		ABZR87_RS12925	0.61	-0.7
2,750,829	+		ABZR87_RS12925	0.61	+0.6
2,750,845	+		ABZR87_RS12925	0.65	-0.6
2,750,846	-		ABZR87_RS12925	0.65	-0.6
2,750,846	-		ABZR87_RS12925	0.65	+0.3
2,750,846	-		ABZR87_RS12925	0.65	-0.4
2,750,900	-		ABZR87_RS12925	0.77	-0.2
2,750,900	-		ABZR87_RS12925	0.77	-0.9
2,750,901	+		ABZR87_RS12925	0.77	+0.1
2,750,901	+		ABZR87_RS12925	0.77	-0.7
2,750,901	+		ABZR87_RS12925	0.77	+3.5
2,750,902	-		ABZR87_RS12925	0.78	-1.1
2,750,902	-		ABZR87_RS12925	0.78	+0.4
2,750,961	+				-1.4
2,750,961	+				-1.1
2,750,961	+				+0.1
2,750,961	+				-2.0
2,750,962	-				-0.2
2,750,962	-				+0.3
2,750,985	+				-0.3
2,751,035	+				+1.1
2,751,035	+				+0.9
2,751,035	+				-0.6
2,751,035	+				+0.3
2,751,035	+				-1.7
2,751,036	-				+1.2
2,751,036	-				-0.1
2,751,036	-				-0.5
2,751,036	-				-1.1
2,751,036	-				+1.0
2,751,105	+				+0.7
2,751,105	+				-0.3
2,751,144	-		ABZR87_RS12930	0.12	-0.7
2,751,174	-		ABZR87_RS12930	0.17	+0.3
2,751,187	-		ABZR87_RS12930	0.20	+0.7
2,751,187	-		ABZR87_RS12930	0.20	+0.1
2,751,200	+		ABZR87_RS12930	0.22	-0.6
2,751,200	+		ABZR87_RS12930	0.22	+0.8
2,751,200	+		ABZR87_RS12930	0.22	+0.2
2,751,200	+		ABZR87_RS12930	0.22	+0.6
2,751,201	-		ABZR87_RS12930	0.22	-0.4
2,751,201	-		ABZR87_RS12930	0.22	+1.5
2,751,201	-		ABZR87_RS12930	0.22	-0.6
2,751,201	-		ABZR87_RS12930	0.22	-0.4
2,751,201	-		ABZR87_RS12930	0.22	-0.0
2,751,201	-		ABZR87_RS12930	0.22	-0.3
2,751,202	+		ABZR87_RS12930	0.23	+0.4
2,751,222	+		ABZR87_RS12930	0.26	+1.1
2,751,246	+		ABZR87_RS12930	0.31	-1.5
2,751,247	-		ABZR87_RS12930	0.31	+0.1
2,751,247	-		ABZR87_RS12930	0.31	-2.0
2,751,247	-		ABZR87_RS12930	0.31	+0.4
2,751,247	-		ABZR87_RS12930	0.31	-1.4
2,751,247	-		ABZR87_RS12930	0.31	-0.6
2,751,324	-		ABZR87_RS12930	0.45	+1.2
2,751,406	+		ABZR87_RS12930	0.60	-0.7
2,751,407	-		ABZR87_RS12930	0.61	+0.5
2,751,407	-		ABZR87_RS12930	0.61	-3.4
2,751,409	+		ABZR87_RS12930	0.61	-2.6
2,751,410	-		ABZR87_RS12930	0.61	-1.1
2,751,414	+		ABZR87_RS12930	0.62	-1.4
2,751,414	+		ABZR87_RS12930	0.62	-1.0
2,751,414	+		ABZR87_RS12930	0.62	-0.0