Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07530

Experiment: no_plant_rhizosphere sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07520 and ABZR87_RS07525 are separated by 99 nucleotidesABZR87_RS07525 and ABZR87_RS07530 are separated by 18 nucleotidesABZR87_RS07530 and ABZR87_RS07535 overlap by 4 nucleotidesABZR87_RS07535 and ABZR87_RS07540 are separated by 76 nucleotides ABZR87_RS07520: ABZR87_RS07520 - glutamate/aspartate ABC transporter substrate-binding protein, at 1,598,190 to 1,599,098 _RS07520 ABZR87_RS07525: ABZR87_RS07525 - amino acid ABC transporter permease, at 1,599,198 to 1,599,926 _RS07525 ABZR87_RS07530: ABZR87_RS07530 - glutamate/aspartate ABC transporter permease GltK, at 1,599,945 to 1,600,628 _RS07530 ABZR87_RS07535: ABZR87_RS07535 - amino acid ABC transporter ATP-binding protein, at 1,600,625 to 1,601,359 _RS07535 ABZR87_RS07540: ABZR87_RS07540 - class II glutamine amidotransferase, at 1,601,436 to 1,602,266 _RS07540 Position (kb) 1599 1600 1601Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1598.985 kb on + strand, within ABZR87_RS07520at 1598.986 kb on - strand, within ABZR87_RS07520at 1598.986 kb on - strand, within ABZR87_RS07520at 1598.986 kb on - strand, within ABZR87_RS07520at 1599.121 kb on + strandat 1599.121 kb on + strandat 1599.122 kb on - strandat 1599.122 kb on - strandat 1599.204 kb on + strandat 1599.204 kb on + strandat 1599.204 kb on + strandat 1599.204 kb on + strandat 1599.205 kb on - strandat 1599.255 kb on + strandat 1599.256 kb on - strandat 1599.396 kb on + strand, within ABZR87_RS07525at 1599.396 kb on + strand, within ABZR87_RS07525at 1599.396 kb on + strand, within ABZR87_RS07525at 1599.397 kb on - strand, within ABZR87_RS07525at 1599.397 kb on - strand, within ABZR87_RS07525at 1599.397 kb on - strand, within ABZR87_RS07525at 1599.397 kb on - strand, within ABZR87_RS07525at 1599.397 kb on - strand, within ABZR87_RS07525at 1599.397 kb on - strand, within ABZR87_RS07525at 1599.397 kb on - strand, within ABZR87_RS07525at 1599.397 kb on - strand, within ABZR87_RS07525at 1599.397 kb on - strand, within ABZR87_RS07525at 1599.447 kb on + strand, within ABZR87_RS07525at 1599.448 kb on - strand, within ABZR87_RS07525at 1599.484 kb on - strand, within ABZR87_RS07525at 1599.484 kb on - strand, within ABZR87_RS07525at 1599.484 kb on - strand, within ABZR87_RS07525at 1599.484 kb on - strand, within ABZR87_RS07525at 1599.506 kb on + strand, within ABZR87_RS07525at 1599.506 kb on + strand, within ABZR87_RS07525at 1599.507 kb on - strand, within ABZR87_RS07525at 1599.543 kb on - strand, within ABZR87_RS07525at 1599.651 kb on + strand, within ABZR87_RS07525at 1599.651 kb on + strand, within ABZR87_RS07525at 1599.651 kb on + strand, within ABZR87_RS07525at 1599.652 kb on - strand, within ABZR87_RS07525at 1599.652 kb on - strand, within ABZR87_RS07525at 1599.657 kb on + strand, within ABZR87_RS07525at 1599.657 kb on + strand, within ABZR87_RS07525at 1599.658 kb on - strand, within ABZR87_RS07525at 1599.658 kb on - strand, within ABZR87_RS07525at 1599.658 kb on - strand, within ABZR87_RS07525at 1599.658 kb on - strand, within ABZR87_RS07525at 1599.796 kb on - strand, within ABZR87_RS07525at 1599.811 kb on - strand, within ABZR87_RS07525at 1599.840 kb on + strand, within ABZR87_RS07525at 1599.840 kb on + strand, within ABZR87_RS07525at 1599.840 kb on + strand, within ABZR87_RS07525at 1599.840 kb on + strand, within ABZR87_RS07525at 1599.840 kb on + strand, within ABZR87_RS07525at 1599.841 kb on - strand, within ABZR87_RS07525at 1599.841 kb on - strand, within ABZR87_RS07525at 1599.841 kb on - strand, within ABZR87_RS07525at 1599.841 kb on - strand, within ABZR87_RS07525at 1599.841 kb on - strand, within ABZR87_RS07525at 1599.924 kb on + strandat 1599.924 kb on + strandat 1599.951 kb on + strandat 1599.952 kb on - strandat 1600.125 kb on + strand, within ABZR87_RS07530at 1600.126 kb on - strand, within ABZR87_RS07530at 1600.281 kb on + strand, within ABZR87_RS07530at 1600.281 kb on + strand, within ABZR87_RS07530at 1600.281 kb on + strand, within ABZR87_RS07530at 1600.344 kb on + strand, within ABZR87_RS07530at 1600.344 kb on + strand, within ABZR87_RS07530at 1600.345 kb on - strand, within ABZR87_RS07530at 1600.345 kb on - strand, within ABZR87_RS07530at 1600.355 kb on + strand, within ABZR87_RS07530at 1600.356 kb on - strand, within ABZR87_RS07530at 1600.356 kb on - strand, within ABZR87_RS07530at 1600.362 kb on + strand, within ABZR87_RS07530at 1600.362 kb on + strand, within ABZR87_RS07530at 1600.363 kb on - strand, within ABZR87_RS07530at 1600.454 kb on + strand, within ABZR87_RS07530at 1600.455 kb on - strand, within ABZR87_RS07530at 1600.467 kb on + strand, within ABZR87_RS07530at 1600.468 kb on - strand, within ABZR87_RS07530at 1600.468 kb on - strand, within ABZR87_RS07530at 1600.468 kb on - strand, within ABZR87_RS07530at 1600.468 kb on - strand, within ABZR87_RS07530at 1600.468 kb on - strand, within ABZR87_RS07530at 1600.494 kb on - strand, within ABZR87_RS07530at 1600.494 kb on - strand, within ABZR87_RS07530at 1600.503 kb on + strand, within ABZR87_RS07530at 1600.503 kb on + strand, within ABZR87_RS07530at 1600.503 kb on + strand, within ABZR87_RS07530at 1600.504 kb on - strand, within ABZR87_RS07530at 1600.504 kb on - strand, within ABZR87_RS07530at 1600.504 kb on - strand, within ABZR87_RS07530at 1600.504 kb on - strand, within ABZR87_RS07530at 1600.504 kb on - strand, within ABZR87_RS07530at 1600.504 kb on - strand, within ABZR87_RS07530at 1600.504 kb on - strand, within ABZR87_RS07530at 1600.530 kb on - strand, within ABZR87_RS07530at 1600.563 kb on + strandat 1600.563 kb on + strandat 1600.564 kb on - strandat 1600.564 kb on - strandat 1600.982 kb on + strand, within ABZR87_RS07535at 1600.983 kb on - strand, within ABZR87_RS07535at 1600.983 kb on - strand, within ABZR87_RS07535at 1601.022 kb on - strand, within ABZR87_RS07535at 1601.357 kb on + strandat 1601.357 kb on + strandat 1601.358 kb on - strandat 1601.377 kb on + strandat 1601.378 kb on - strandat 1601.396 kb on + strandat 1601.396 kb on + strandat 1601.421 kb on - strandat 1601.620 kb on + strand, within ABZR87_RS07540at 1601.620 kb on + strand, within ABZR87_RS07540at 1601.620 kb on + strand, within ABZR87_RS07540at 1601.620 kb on + strand, within ABZR87_RS07540at 1601.621 kb on - strand, within ABZR87_RS07540

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB
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1,598,985 + ABZR87_RS07520 0.87 +0.2
1,598,986 - ABZR87_RS07520 0.88 -0.2
1,598,986 - ABZR87_RS07520 0.88 -0.3
1,598,986 - ABZR87_RS07520 0.88 +0.4
1,599,121 + +2.2
1,599,121 + +1.5
1,599,122 - +1.0
1,599,122 - +0.5
1,599,204 + +0.0
1,599,204 + -0.1
1,599,204 + -0.8
1,599,204 + -0.4
1,599,205 - -1.6
1,599,255 + -0.2
1,599,256 - -0.7
1,599,396 + ABZR87_RS07525 0.27 -2.5
1,599,396 + ABZR87_RS07525 0.27 -0.2
1,599,396 + ABZR87_RS07525 0.27 -1.1
1,599,397 - ABZR87_RS07525 0.27 -2.9
1,599,397 - ABZR87_RS07525 0.27 -2.4
1,599,397 - ABZR87_RS07525 0.27 +1.2
1,599,397 - ABZR87_RS07525 0.27 +0.5
1,599,397 - ABZR87_RS07525 0.27 +1.2
1,599,397 - ABZR87_RS07525 0.27 +0.8
1,599,397 - ABZR87_RS07525 0.27 -0.0
1,599,397 - ABZR87_RS07525 0.27 -1.0
1,599,397 - ABZR87_RS07525 0.27 -0.4
1,599,447 + ABZR87_RS07525 0.34 -0.6
1,599,448 - ABZR87_RS07525 0.34 -1.3
1,599,484 - ABZR87_RS07525 0.39 -1.4
1,599,484 - ABZR87_RS07525 0.39 +0.6
1,599,484 - ABZR87_RS07525 0.39 +0.6
1,599,484 - ABZR87_RS07525 0.39 -0.8
1,599,506 + ABZR87_RS07525 0.42 -0.8
1,599,506 + ABZR87_RS07525 0.42 -0.4
1,599,507 - ABZR87_RS07525 0.42 -2.4
1,599,543 - ABZR87_RS07525 0.47 -0.7
1,599,651 + ABZR87_RS07525 0.62 +0.8
1,599,651 + ABZR87_RS07525 0.62 +2.8
1,599,651 + ABZR87_RS07525 0.62 +0.6
1,599,652 - ABZR87_RS07525 0.62 +1.7
1,599,652 - ABZR87_RS07525 0.62 -0.1
1,599,657 + ABZR87_RS07525 0.63 -0.7
1,599,657 + ABZR87_RS07525 0.63 -0.6
1,599,658 - ABZR87_RS07525 0.63 -0.5
1,599,658 - ABZR87_RS07525 0.63 -1.2
1,599,658 - ABZR87_RS07525 0.63 +0.8
1,599,658 - ABZR87_RS07525 0.63 -2.1
1,599,796 - ABZR87_RS07525 0.82 -1.1
1,599,811 - ABZR87_RS07525 0.84 -2.5
1,599,840 + ABZR87_RS07525 0.88 +1.5
1,599,840 + ABZR87_RS07525 0.88 -3.4
1,599,840 + ABZR87_RS07525 0.88 -0.2
1,599,840 + ABZR87_RS07525 0.88 -0.5
1,599,840 + ABZR87_RS07525 0.88 -1.3
1,599,841 - ABZR87_RS07525 0.88 -1.8
1,599,841 - ABZR87_RS07525 0.88 -2.1
1,599,841 - ABZR87_RS07525 0.88 +0.0
1,599,841 - ABZR87_RS07525 0.88 -0.6
1,599,841 - ABZR87_RS07525 0.88 -0.1
1,599,924 + +0.1
1,599,924 + -0.6
1,599,951 + -0.6
1,599,952 - -1.9
1,600,125 + ABZR87_RS07530 0.26 -0.5
1,600,126 - ABZR87_RS07530 0.26 -0.1
1,600,281 + ABZR87_RS07530 0.49 +0.5
1,600,281 + ABZR87_RS07530 0.49 -0.9
1,600,281 + ABZR87_RS07530 0.49 -1.4
1,600,344 + ABZR87_RS07530 0.58 +0.1
1,600,344 + ABZR87_RS07530 0.58 -0.8
1,600,345 - ABZR87_RS07530 0.58 -2.9
1,600,345 - ABZR87_RS07530 0.58 -0.1
1,600,355 + ABZR87_RS07530 0.60 -1.4
1,600,356 - ABZR87_RS07530 0.60 -0.1
1,600,356 - ABZR87_RS07530 0.60 +0.1
1,600,362 + ABZR87_RS07530 0.61 +0.5
1,600,362 + ABZR87_RS07530 0.61 -1.1
1,600,363 - ABZR87_RS07530 0.61 -2.3
1,600,454 + ABZR87_RS07530 0.74 -0.5
1,600,455 - ABZR87_RS07530 0.75 -0.4
1,600,467 + ABZR87_RS07530 0.76 +0.4
1,600,468 - ABZR87_RS07530 0.76 +0.2
1,600,468 - ABZR87_RS07530 0.76 -1.6
1,600,468 - ABZR87_RS07530 0.76 -1.4
1,600,468 - ABZR87_RS07530 0.76 -0.4
1,600,468 - ABZR87_RS07530 0.76 +0.0
1,600,494 - ABZR87_RS07530 0.80 -1.7
1,600,494 - ABZR87_RS07530 0.80 -0.1
1,600,503 + ABZR87_RS07530 0.82 -2.1
1,600,503 + ABZR87_RS07530 0.82 -2.8
1,600,503 + ABZR87_RS07530 0.82 +0.4
1,600,504 - ABZR87_RS07530 0.82 -2.0
1,600,504 - ABZR87_RS07530 0.82 +0.6
1,600,504 - ABZR87_RS07530 0.82 +0.6
1,600,504 - ABZR87_RS07530 0.82 +0.9
1,600,504 - ABZR87_RS07530 0.82 -0.2
1,600,504 - ABZR87_RS07530 0.82 -0.8
1,600,504 - ABZR87_RS07530 0.82 +1.5
1,600,530 - ABZR87_RS07530 0.86 +0.2
1,600,563 + +1.1
1,600,563 + +0.1
1,600,564 - -0.5
1,600,564 - -1.0
1,600,982 + ABZR87_RS07535 0.49 +1.2
1,600,983 - ABZR87_RS07535 0.49 -0.0
1,600,983 - ABZR87_RS07535 0.49 +0.7
1,601,022 - ABZR87_RS07535 0.54 +0.8
1,601,357 + +1.0
1,601,357 + -0.3
1,601,358 - -0.6
1,601,377 + +0.6
1,601,378 - -0.4
1,601,396 + -0.3
1,601,396 + -0.4
1,601,421 - -0.5
1,601,620 + ABZR87_RS07540 0.22 -0.0
1,601,620 + ABZR87_RS07540 0.22 -0.2
1,601,620 + ABZR87_RS07540 0.22 +0.5
1,601,620 + ABZR87_RS07540 0.22 +0.3
1,601,621 - ABZR87_RS07540 0.22 +0.7

Or see this region's nucleotide sequence