Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07250 and ABZR87_RS07255 are separated by 25 nucleotides ABZR87_RS07255 and ABZR87_RS07260 are separated by 405 nucleotides ABZR87_RS07260 and ABZR87_RS07265 are separated by 54 nucleotides
ABZR87_RS07250: ABZR87_RS07250 - AMP-binding protein, at 1,536,486 to 1,538,183
_RS07250
ABZR87_RS07255: ABZR87_RS07255 - membrane protein, at 1,538,209 to 1,538,883
_RS07255
ABZR87_RS07260: ABZR87_RS07260 - phosphopantetheine-binding protein, at 1,539,289 to 1,539,549
_RS07260
ABZR87_RS07265: ABZR87_RS07265 - glycosyltransferase family 2 protein, at 1,539,604 to 1,540,374
_RS07265
Position (kb) 1538
1539 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1537.297 kb on + strand, within ABZR87_RS07250 at 1537.363 kb on + strand, within ABZR87_RS07250 at 1537.363 kb on + strand, within ABZR87_RS07250 at 1537.565 kb on - strand, within ABZR87_RS07250 at 1537.633 kb on + strand, within ABZR87_RS07250 at 1537.633 kb on + strand, within ABZR87_RS07250 at 1537.633 kb on + strand, within ABZR87_RS07250 at 1537.634 kb on - strand, within ABZR87_RS07250 at 1537.634 kb on - strand, within ABZR87_RS07250 at 1537.634 kb on - strand, within ABZR87_RS07250 at 1537.634 kb on - strand, within ABZR87_RS07250 at 1537.634 kb on - strand, within ABZR87_RS07250 at 1537.634 kb on - strand, within ABZR87_RS07250 at 1537.634 kb on - strand, within ABZR87_RS07250 at 1537.634 kb on - strand, within ABZR87_RS07250 at 1538.046 kb on + strand at 1538.046 kb on + strand at 1538.046 kb on + strand at 1538.046 kb on + strand at 1538.046 kb on + strand at 1538.046 kb on + strand at 1538.046 kb on + strand at 1538.047 kb on - strand at 1538.047 kb on - strand at 1538.047 kb on - strand at 1538.173 kb on + strand at 1538.334 kb on - strand, within ABZR87_RS07255 at 1538.375 kb on + strand, within ABZR87_RS07255 at 1538.375 kb on + strand, within ABZR87_RS07255 at 1538.376 kb on - strand, within ABZR87_RS07255 at 1538.376 kb on - strand, within ABZR87_RS07255 at 1538.376 kb on - strand, within ABZR87_RS07255 at 1538.376 kb on - strand, within ABZR87_RS07255 at 1538.376 kb on - strand, within ABZR87_RS07255 at 1538.431 kb on + strand, within ABZR87_RS07255 at 1538.432 kb on - strand, within ABZR87_RS07255 at 1538.432 kb on - strand, within ABZR87_RS07255 at 1538.487 kb on - strand, within ABZR87_RS07255 at 1538.582 kb on + strand, within ABZR87_RS07255 at 1538.582 kb on + strand, within ABZR87_RS07255 at 1538.582 kb on + strand, within ABZR87_RS07255 at 1538.582 kb on + strand, within ABZR87_RS07255 at 1538.583 kb on - strand, within ABZR87_RS07255 at 1538.583 kb on - strand, within ABZR87_RS07255 at 1538.583 kb on - strand, within ABZR87_RS07255 at 1538.583 kb on - strand, within ABZR87_RS07255 at 1538.583 kb on - strand, within ABZR87_RS07255 at 1538.583 kb on - strand, within ABZR87_RS07255 at 1538.583 kb on - strand, within ABZR87_RS07255 at 1538.618 kb on + strand, within ABZR87_RS07255 at 1538.618 kb on + strand, within ABZR87_RS07255 at 1538.618 kb on + strand, within ABZR87_RS07255 at 1538.619 kb on - strand, within ABZR87_RS07255 at 1538.619 kb on - strand, within ABZR87_RS07255 at 1538.619 kb on - strand, within ABZR87_RS07255 at 1538.807 kb on + strand, within ABZR87_RS07255 at 1538.807 kb on + strand, within ABZR87_RS07255 at 1538.808 kb on - strand, within ABZR87_RS07255 at 1538.808 kb on - strand, within ABZR87_RS07255 at 1538.826 kb on - strand at 1538.947 kb on - strand at 1538.962 kb on + strand at 1538.963 kb on - strand at 1539.007 kb on + strand at 1539.017 kb on + strand at 1539.017 kb on + strand at 1539.017 kb on + strand at 1539.017 kb on + strand at 1539.017 kb on + strand at 1539.017 kb on + strand at 1539.017 kb on + strand at 1539.017 kb on + strand at 1539.018 kb on - strand at 1539.018 kb on - strand at 1539.018 kb on - strand at 1539.018 kb on - strand at 1539.058 kb on + strand at 1539.059 kb on - strand at 1539.113 kb on - strand at 1539.113 kb on - strand at 1539.140 kb on - strand at 1539.141 kb on + strand at 1539.142 kb on - strand at 1539.162 kb on + strand at 1539.162 kb on + strand at 1539.162 kb on + strand at 1539.174 kb on - strand at 1539.174 kb on - strand at 1539.178 kb on + strand at 1539.178 kb on + strand at 1539.178 kb on + strand at 1539.178 kb on + strand at 1539.178 kb on + strand at 1539.262 kb on + strand at 1539.263 kb on - strand at 1539.263 kb on - strand at 1539.263 kb on - strand at 1539.263 kb on - strand at 1539.385 kb on + strand, within ABZR87_RS07260 at 1539.385 kb on + strand, within ABZR87_RS07260 at 1539.451 kb on + strand, within ABZR87_RS07260 at 1539.451 kb on + strand, within ABZR87_RS07260 at 1539.451 kb on + strand, within ABZR87_RS07260 at 1539.452 kb on - strand, within ABZR87_RS07260 at 1539.523 kb on + strand, within ABZR87_RS07260 at 1539.523 kb on + strand, within ABZR87_RS07260 at 1539.524 kb on - strand at 1539.524 kb on - strand at 1539.524 kb on - strand at 1539.547 kb on + strand at 1539.548 kb on - strand at 1539.548 kb on - strand at 1539.586 kb on + strand at 1539.586 kb on + strand at 1539.587 kb on - strand at 1539.652 kb on + strand at 1539.652 kb on + strand at 1539.652 kb on + strand at 1539.653 kb on - strand at 1539.653 kb on - strand at 1539.875 kb on - strand, within ABZR87_RS07265 at 1539.875 kb on - strand, within ABZR87_RS07265
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 1,537,297 + ABZR87_RS07250 0.48 +0.9 1,537,363 + ABZR87_RS07250 0.52 +0.2 1,537,363 + ABZR87_RS07250 0.52 -1.3 1,537,565 - ABZR87_RS07250 0.64 +1.2 1,537,633 + ABZR87_RS07250 0.68 -2.6 1,537,633 + ABZR87_RS07250 0.68 +0.1 1,537,633 + ABZR87_RS07250 0.68 +0.7 1,537,634 - ABZR87_RS07250 0.68 -0.6 1,537,634 - ABZR87_RS07250 0.68 +0.3 1,537,634 - ABZR87_RS07250 0.68 -1.6 1,537,634 - ABZR87_RS07250 0.68 +0.2 1,537,634 - ABZR87_RS07250 0.68 -0.0 1,537,634 - ABZR87_RS07250 0.68 -0.7 1,537,634 - ABZR87_RS07250 0.68 +0.9 1,537,634 - ABZR87_RS07250 0.68 -1.9 1,538,046 + +0.9 1,538,046 + +1.0 1,538,046 + +1.0 1,538,046 + +0.2 1,538,046 + +0.9 1,538,046 + -0.5 1,538,046 + -0.5 1,538,047 - -2.0 1,538,047 - +2.7 1,538,047 - -0.1 1,538,173 + +0.1 1,538,334 - ABZR87_RS07255 0.19 +0.7 1,538,375 + ABZR87_RS07255 0.25 +1.0 1,538,375 + ABZR87_RS07255 0.25 -0.9 1,538,376 - ABZR87_RS07255 0.25 -0.6 1,538,376 - ABZR87_RS07255 0.25 -2.8 1,538,376 - ABZR87_RS07255 0.25 +0.6 1,538,376 - ABZR87_RS07255 0.25 -1.0 1,538,376 - ABZR87_RS07255 0.25 -1.5 1,538,431 + ABZR87_RS07255 0.33 -2.3 1,538,432 - ABZR87_RS07255 0.33 -0.8 1,538,432 - ABZR87_RS07255 0.33 +1.6 1,538,487 - ABZR87_RS07255 0.41 -0.7 1,538,582 + ABZR87_RS07255 0.55 -1.3 1,538,582 + ABZR87_RS07255 0.55 +0.4 1,538,582 + ABZR87_RS07255 0.55 +1.4 1,538,582 + ABZR87_RS07255 0.55 -1.0 1,538,583 - ABZR87_RS07255 0.55 +0.2 1,538,583 - ABZR87_RS07255 0.55 -0.6 1,538,583 - ABZR87_RS07255 0.55 -1.7 1,538,583 - ABZR87_RS07255 0.55 +1.4 1,538,583 - ABZR87_RS07255 0.55 -0.1 1,538,583 - ABZR87_RS07255 0.55 +0.1 1,538,583 - ABZR87_RS07255 0.55 +0.7 1,538,618 + ABZR87_RS07255 0.61 -0.4 1,538,618 + ABZR87_RS07255 0.61 +0.7 1,538,618 + ABZR87_RS07255 0.61 +0.0 1,538,619 - ABZR87_RS07255 0.61 +1.3 1,538,619 - ABZR87_RS07255 0.61 +0.4 1,538,619 - ABZR87_RS07255 0.61 +1.1 1,538,807 + ABZR87_RS07255 0.89 +0.6 1,538,807 + ABZR87_RS07255 0.89 +0.9 1,538,808 - ABZR87_RS07255 0.89 -0.7 1,538,808 - ABZR87_RS07255 0.89 -0.4 1,538,826 - +1.0 1,538,947 - +0.8 1,538,962 + +0.1 1,538,963 - +0.0 1,539,007 + -0.3 1,539,017 + +0.2 1,539,017 + -0.9 1,539,017 + -1.3 1,539,017 + +0.3 1,539,017 + +1.0 1,539,017 + +0.1 1,539,017 + -0.4 1,539,017 + -0.2 1,539,018 - +1.9 1,539,018 - +0.3 1,539,018 - -0.1 1,539,018 - +0.9 1,539,058 + -0.3 1,539,059 - -0.2 1,539,113 - -2.0 1,539,113 - +0.8 1,539,140 - +0.2 1,539,141 + -0.0 1,539,142 - -0.1 1,539,162 + -2.1 1,539,162 + +1.1 1,539,162 + +0.6 1,539,174 - +1.4 1,539,174 - +1.1 1,539,178 + -1.2 1,539,178 + -0.6 1,539,178 + -1.9 1,539,178 + -1.2 1,539,178 + -2.0 1,539,262 + +1.2 1,539,263 - +0.1 1,539,263 - +0.3 1,539,263 - -0.1 1,539,263 - -1.6 1,539,385 + ABZR87_RS07260 0.37 +1.1 1,539,385 + ABZR87_RS07260 0.37 +0.7 1,539,451 + ABZR87_RS07260 0.62 +1.7 1,539,451 + ABZR87_RS07260 0.62 +0.1 1,539,451 + ABZR87_RS07260 0.62 +1.5 1,539,452 - ABZR87_RS07260 0.62 +0.2 1,539,523 + ABZR87_RS07260 0.90 +1.1 1,539,523 + ABZR87_RS07260 0.90 -1.5 1,539,524 - +0.5 1,539,524 - +1.5 1,539,524 - -0.1 1,539,547 + -0.9 1,539,548 - -0.1 1,539,548 - -1.5 1,539,586 + -0.5 1,539,586 + +0.4 1,539,587 - +0.8 1,539,652 + -1.1 1,539,652 + -1.9 1,539,652 + +0.2 1,539,653 - +0.9 1,539,653 - -0.2 1,539,875 - ABZR87_RS07265 0.35 -0.4 1,539,875 - ABZR87_RS07265 0.35 +1.7
Or see this region's nucleotide sequence