Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS06900 and ABZR87_RS06905 are separated by 219 nucleotides ABZR87_RS06905 and ABZR87_RS06910 are separated by 88 nucleotides ABZR87_RS06910 and ABZR87_RS06915 are separated by 146 nucleotides ABZR87_RS06915 and ABZR87_RS06920 are separated by 26 nucleotides
ABZR87_RS06900: ABZR87_RS06900 - CmpA/NrtA family ABC transporter substrate-binding protein, at 1,460,901 to 1,462,181
_RS06900
ABZR87_RS06905: ABZR87_RS06905 - hypothetical protein, at 1,462,401 to 1,462,664
_RS06905
ABZR87_RS06910: ABZR87_RS06910 - ANTAR domain-containing protein, at 1,462,753 to 1,463,379
_RS06910
ABZR87_RS06915: ABZR87_RS06915 - fumarylacetoacetate hydrolase family protein, at 1,463,526 to 1,464,227
_RS06915
ABZR87_RS06920: ABZR87_RS06920 - maleylacetoacetate isomerase, at 1,464,254 to 1,464,898
_RS06920
Position (kb) 1462
1463
1464 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12 at 1461.829 kb on + strand, within ABZR87_RS06900 at 1461.829 kb on + strand, within ABZR87_RS06900 at 1461.829 kb on + strand, within ABZR87_RS06900 at 1461.829 kb on + strand, within ABZR87_RS06900 at 1461.830 kb on - strand, within ABZR87_RS06900 at 1461.830 kb on - strand, within ABZR87_RS06900 at 1461.830 kb on - strand, within ABZR87_RS06900 at 1461.830 kb on - strand, within ABZR87_RS06900 at 1461.841 kb on + strand, within ABZR87_RS06900 at 1461.841 kb on + strand, within ABZR87_RS06900 at 1461.934 kb on + strand, within ABZR87_RS06900 at 1461.934 kb on + strand, within ABZR87_RS06900 at 1461.934 kb on + strand, within ABZR87_RS06900 at 1461.934 kb on + strand, within ABZR87_RS06900 at 1462.321 kb on + strand at 1462.322 kb on - strand at 1462.425 kb on + strand at 1462.425 kb on + strand at 1462.425 kb on + strand at 1462.426 kb on - strand at 1462.509 kb on + strand, within ABZR87_RS06905 at 1462.510 kb on - strand, within ABZR87_RS06905 at 1462.552 kb on - strand, within ABZR87_RS06905 at 1462.552 kb on - strand, within ABZR87_RS06905 at 1462.552 kb on - strand, within ABZR87_RS06905 at 1462.552 kb on - strand, within ABZR87_RS06905 at 1462.635 kb on + strand, within ABZR87_RS06905 at 1462.636 kb on - strand, within ABZR87_RS06905 at 1462.636 kb on - strand, within ABZR87_RS06905 at 1462.636 kb on - strand, within ABZR87_RS06905 at 1462.636 kb on - strand, within ABZR87_RS06905 at 1462.974 kb on - strand, within ABZR87_RS06910 at 1462.974 kb on - strand, within ABZR87_RS06910 at 1462.974 kb on - strand, within ABZR87_RS06910 at 1462.974 kb on - strand, within ABZR87_RS06910 at 1463.027 kb on + strand, within ABZR87_RS06910 at 1463.027 kb on + strand, within ABZR87_RS06910 at 1463.027 kb on + strand, within ABZR87_RS06910 at 1463.028 kb on - strand, within ABZR87_RS06910 at 1463.028 kb on - strand, within ABZR87_RS06910 at 1463.442 kb on + strand at 1463.442 kb on + strand at 1463.442 kb on + strand at 1463.442 kb on + strand at 1463.442 kb on + strand at 1463.508 kb on + strand at 1463.508 kb on + strand at 1463.509 kb on - strand at 1463.509 kb on - strand at 1463.610 kb on + strand, within ABZR87_RS06915 at 1463.611 kb on - strand, within ABZR87_RS06915 at 1463.611 kb on - strand, within ABZR87_RS06915 at 1463.628 kb on + strand, within ABZR87_RS06915 at 1463.628 kb on + strand, within ABZR87_RS06915 at 1463.628 kb on + strand, within ABZR87_RS06915 at 1463.629 kb on - strand, within ABZR87_RS06915 at 1463.629 kb on - strand, within ABZR87_RS06915 at 1463.629 kb on - strand, within ABZR87_RS06915 at 1463.712 kb on + strand, within ABZR87_RS06915 at 1463.713 kb on - strand, within ABZR87_RS06915 at 1463.713 kb on - strand, within ABZR87_RS06915 at 1463.713 kb on - strand, within ABZR87_RS06915 at 1463.745 kb on + strand, within ABZR87_RS06915 at 1463.746 kb on - strand, within ABZR87_RS06915 at 1463.773 kb on - strand, within ABZR87_RS06915 at 1463.843 kb on + strand, within ABZR87_RS06915 at 1463.843 kb on + strand, within ABZR87_RS06915 at 1463.843 kb on + strand, within ABZR87_RS06915 at 1463.843 kb on + strand, within ABZR87_RS06915 at 1463.843 kb on + strand, within ABZR87_RS06915 at 1463.843 kb on + strand, within ABZR87_RS06915 at 1463.847 kb on + strand, within ABZR87_RS06915 at 1463.847 kb on + strand, within ABZR87_RS06915 at 1463.847 kb on + strand, within ABZR87_RS06915 at 1463.847 kb on + strand, within ABZR87_RS06915 at 1463.847 kb on + strand, within ABZR87_RS06915 at 1463.847 kb on + strand, within ABZR87_RS06915 at 1463.847 kb on + strand, within ABZR87_RS06915 at 1463.848 kb on - strand, within ABZR87_RS06915 at 1463.848 kb on - strand, within ABZR87_RS06915 at 1463.848 kb on - strand, within ABZR87_RS06915 at 1463.848 kb on - strand, within ABZR87_RS06915 at 1463.848 kb on - strand, within ABZR87_RS06915 at 1463.848 kb on - strand, within ABZR87_RS06915 at 1463.848 kb on - strand, within ABZR87_RS06915 at 1463.848 kb on - strand, within ABZR87_RS06915 at 1464.087 kb on + strand, within ABZR87_RS06915 at 1464.087 kb on + strand, within ABZR87_RS06915 at 1464.087 kb on + strand, within ABZR87_RS06915 at 1464.087 kb on + strand, within ABZR87_RS06915 at 1464.087 kb on + strand, within ABZR87_RS06915 at 1464.088 kb on - strand, within ABZR87_RS06915 at 1464.088 kb on - strand, within ABZR87_RS06915 at 1464.088 kb on - strand, within ABZR87_RS06915 at 1464.129 kb on + strand, within ABZR87_RS06915 at 1464.130 kb on - strand, within ABZR87_RS06915 at 1464.130 kb on - strand, within ABZR87_RS06915 at 1464.130 kb on - strand, within ABZR87_RS06915 at 1464.269 kb on + strand at 1464.269 kb on + strand at 1464.269 kb on + strand at 1464.270 kb on - strand at 1464.270 kb on - strand at 1464.270 kb on - strand at 1464.270 kb on - strand at 1464.275 kb on + strand at 1464.275 kb on + strand at 1464.276 kb on - strand at 1464.276 kb on - strand at 1464.335 kb on + strand, within ABZR87_RS06920 at 1464.341 kb on + strand, within ABZR87_RS06920
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 1,461,829 + ABZR87_RS06900 0.72 -0.4 1,461,829 + ABZR87_RS06900 0.72 -2.6 1,461,829 + ABZR87_RS06900 0.72 -1.4 1,461,829 + ABZR87_RS06900 0.72 -0.3 1,461,830 - ABZR87_RS06900 0.73 -0.3 1,461,830 - ABZR87_RS06900 0.73 -0.5 1,461,830 - ABZR87_RS06900 0.73 +1.1 1,461,830 - ABZR87_RS06900 0.73 -0.9 1,461,841 + ABZR87_RS06900 0.73 +0.9 1,461,841 + ABZR87_RS06900 0.73 -0.2 1,461,934 + ABZR87_RS06900 0.81 -0.3 1,461,934 + ABZR87_RS06900 0.81 +12.2 1,461,934 + ABZR87_RS06900 0.81 +0.3 1,461,934 + ABZR87_RS06900 0.81 +1.4 1,462,321 + -1.5 1,462,322 - +0.1 1,462,425 + +0.5 1,462,425 + +0.8 1,462,425 + -0.0 1,462,426 - +0.4 1,462,509 + ABZR87_RS06905 0.41 -1.2 1,462,510 - ABZR87_RS06905 0.41 +0.5 1,462,552 - ABZR87_RS06905 0.57 -0.5 1,462,552 - ABZR87_RS06905 0.57 +0.7 1,462,552 - ABZR87_RS06905 0.57 -0.8 1,462,552 - ABZR87_RS06905 0.57 +0.7 1,462,635 + ABZR87_RS06905 0.89 -0.3 1,462,636 - ABZR87_RS06905 0.89 +0.6 1,462,636 - ABZR87_RS06905 0.89 -0.7 1,462,636 - ABZR87_RS06905 0.89 -0.1 1,462,636 - ABZR87_RS06905 0.89 -0.6 1,462,974 - ABZR87_RS06910 0.35 +0.2 1,462,974 - ABZR87_RS06910 0.35 -0.2 1,462,974 - ABZR87_RS06910 0.35 -1.2 1,462,974 - ABZR87_RS06910 0.35 -1.8 1,463,027 + ABZR87_RS06910 0.44 -2.1 1,463,027 + ABZR87_RS06910 0.44 +0.4 1,463,027 + ABZR87_RS06910 0.44 -0.8 1,463,028 - ABZR87_RS06910 0.44 +0.8 1,463,028 - ABZR87_RS06910 0.44 -1.5 1,463,442 + -0.0 1,463,442 + -1.2 1,463,442 + +0.3 1,463,442 + +0.6 1,463,442 + -0.6 1,463,508 + +0.7 1,463,508 + -1.4 1,463,509 - -2.6 1,463,509 - +1.4 1,463,610 + ABZR87_RS06915 0.12 +1.6 1,463,611 - ABZR87_RS06915 0.12 -2.0 1,463,611 - ABZR87_RS06915 0.12 +0.1 1,463,628 + ABZR87_RS06915 0.15 +0.3 1,463,628 + ABZR87_RS06915 0.15 -0.3 1,463,628 + ABZR87_RS06915 0.15 +0.6 1,463,629 - ABZR87_RS06915 0.15 -1.0 1,463,629 - ABZR87_RS06915 0.15 -0.7 1,463,629 - ABZR87_RS06915 0.15 -2.7 1,463,712 + ABZR87_RS06915 0.26 +2.4 1,463,713 - ABZR87_RS06915 0.27 -2.3 1,463,713 - ABZR87_RS06915 0.27 +1.6 1,463,713 - ABZR87_RS06915 0.27 +0.9 1,463,745 + ABZR87_RS06915 0.31 +0.7 1,463,746 - ABZR87_RS06915 0.31 -0.2 1,463,773 - ABZR87_RS06915 0.35 +0.3 1,463,843 + ABZR87_RS06915 0.45 -0.6 1,463,843 + ABZR87_RS06915 0.45 -1.6 1,463,843 + ABZR87_RS06915 0.45 +0.9 1,463,843 + ABZR87_RS06915 0.45 -0.2 1,463,843 + ABZR87_RS06915 0.45 -0.5 1,463,843 + ABZR87_RS06915 0.45 +0.9 1,463,847 + ABZR87_RS06915 0.46 -1.0 1,463,847 + ABZR87_RS06915 0.46 -2.0 1,463,847 + ABZR87_RS06915 0.46 -0.2 1,463,847 + ABZR87_RS06915 0.46 +0.9 1,463,847 + ABZR87_RS06915 0.46 +1.3 1,463,847 + ABZR87_RS06915 0.46 -0.3 1,463,847 + ABZR87_RS06915 0.46 +0.1 1,463,848 - ABZR87_RS06915 0.46 -0.6 1,463,848 - ABZR87_RS06915 0.46 -2.8 1,463,848 - ABZR87_RS06915 0.46 -0.4 1,463,848 - ABZR87_RS06915 0.46 -0.9 1,463,848 - ABZR87_RS06915 0.46 -0.3 1,463,848 - ABZR87_RS06915 0.46 -0.5 1,463,848 - ABZR87_RS06915 0.46 +1.2 1,463,848 - ABZR87_RS06915 0.46 +0.3 1,464,087 + ABZR87_RS06915 0.80 +0.5 1,464,087 + ABZR87_RS06915 0.80 -0.6 1,464,087 + ABZR87_RS06915 0.80 -1.9 1,464,087 + ABZR87_RS06915 0.80 +0.6 1,464,087 + ABZR87_RS06915 0.80 -2.0 1,464,088 - ABZR87_RS06915 0.80 -0.8 1,464,088 - ABZR87_RS06915 0.80 +2.0 1,464,088 - ABZR87_RS06915 0.80 +0.5 1,464,129 + ABZR87_RS06915 0.86 -0.2 1,464,130 - ABZR87_RS06915 0.86 +0.8 1,464,130 - ABZR87_RS06915 0.86 -2.6 1,464,130 - ABZR87_RS06915 0.86 +0.2 1,464,269 + -0.8 1,464,269 + +0.9 1,464,269 + +0.9 1,464,270 - +0.9 1,464,270 - -1.0 1,464,270 - +1.3 1,464,270 - -1.5 1,464,275 + +0.9 1,464,275 + +0.5 1,464,276 - +0.2 1,464,276 - +1.0 1,464,335 + ABZR87_RS06920 0.13 -1.1 1,464,341 + ABZR87_RS06920 0.13 +0.1
Or see this region's nucleotide sequence