Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS06500 and ABZR87_RS06505 are separated by 101 nucleotides ABZR87_RS06505 and ABZR87_RS06510 overlap by 4 nucleotides ABZR87_RS06510 and ABZR87_RS06515 are separated by 187 nucleotides
ABZR87_RS06500: ABZR87_RS06500 - SPOR domain-containing protein, at 1,383,584 to 1,384,357
_RS06500
ABZR87_RS06505: ABZR87_RS06505 - type III pantothenate kinase, at 1,384,459 to 1,385,340
_RS06505
ABZR87_RS06510: ABZR87_RS06510 - biotin--[acetyl-CoA-carboxylase] ligase, at 1,385,337 to 1,386,218
_RS06510
ABZR87_RS06515: ABZR87_RS06515 - ABC transporter permease, at 1,386,406 to 1,387,530
_RS06515
Position (kb)
1385
1386
1387 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1384.420 kb on + strand at 1384.421 kb on - strand at 1384.460 kb on + strand at 1384.461 kb on - strand at 1386.171 kb on - strand at 1386.218 kb on + strand at 1386.218 kb on + strand at 1386.218 kb on + strand at 1386.218 kb on + strand at 1386.219 kb on - strand at 1386.219 kb on - strand at 1386.219 kb on - strand at 1386.219 kb on - strand at 1386.219 kb on - strand at 1386.219 kb on - strand at 1386.219 kb on - strand at 1386.262 kb on + strand at 1386.262 kb on + strand at 1386.263 kb on - strand at 1386.263 kb on - strand at 1386.363 kb on - strand at 1386.393 kb on + strand at 1386.393 kb on + strand at 1386.394 kb on - strand at 1386.420 kb on + strand at 1386.420 kb on + strand at 1386.420 kb on + strand at 1386.420 kb on + strand at 1386.420 kb on + strand at 1386.420 kb on + strand at 1386.421 kb on - strand at 1386.421 kb on - strand at 1386.421 kb on - strand at 1386.421 kb on - strand at 1386.421 kb on - strand at 1386.421 kb on - strand at 1386.889 kb on + strand, within ABZR87_RS06515 at 1386.889 kb on + strand, within ABZR87_RS06515 at 1386.889 kb on + strand, within ABZR87_RS06515 at 1386.889 kb on + strand, within ABZR87_RS06515 at 1386.890 kb on - strand, within ABZR87_RS06515 at 1386.890 kb on - strand, within ABZR87_RS06515 at 1386.890 kb on - strand, within ABZR87_RS06515 at 1386.890 kb on - strand, within ABZR87_RS06515 at 1386.902 kb on - strand, within ABZR87_RS06515 at 1386.958 kb on + strand, within ABZR87_RS06515 at 1386.958 kb on + strand, within ABZR87_RS06515 at 1386.959 kb on - strand, within ABZR87_RS06515 at 1387.011 kb on + strand, within ABZR87_RS06515 at 1387.012 kb on - strand, within ABZR87_RS06515 at 1387.012 kb on - strand, within ABZR87_RS06515 at 1387.012 kb on - strand, within ABZR87_RS06515 at 1387.012 kb on - strand, within ABZR87_RS06515
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 1,384,420 + -0.5 1,384,421 - -0.8 1,384,460 + -0.2 1,384,461 - +0.5 1,386,171 - -0.2 1,386,218 + +2.0 1,386,218 + +1.0 1,386,218 + +0.8 1,386,218 + +1.8 1,386,219 - +0.1 1,386,219 - +0.0 1,386,219 - +0.5 1,386,219 - +0.8 1,386,219 - -0.2 1,386,219 - -1.8 1,386,219 - -1.1 1,386,262 + +0.2 1,386,262 + +0.1 1,386,263 - +0.5 1,386,263 - -0.9 1,386,363 - +0.4 1,386,393 + -0.2 1,386,393 + -0.0 1,386,394 - -1.6 1,386,420 + +0.2 1,386,420 + +0.4 1,386,420 + -1.4 1,386,420 + +0.3 1,386,420 + +0.4 1,386,420 + -0.8 1,386,421 - -1.1 1,386,421 - -1.2 1,386,421 - +2.3 1,386,421 - +2.0 1,386,421 - -2.2 1,386,421 - +0.5 1,386,889 + ABZR87_RS06515 0.43 -1.1 1,386,889 + ABZR87_RS06515 0.43 +1.1 1,386,889 + ABZR87_RS06515 0.43 -1.3 1,386,889 + ABZR87_RS06515 0.43 -1.2 1,386,890 - ABZR87_RS06515 0.43 -1.6 1,386,890 - ABZR87_RS06515 0.43 -2.3 1,386,890 - ABZR87_RS06515 0.43 -1.7 1,386,890 - ABZR87_RS06515 0.43 +1.0 1,386,902 - ABZR87_RS06515 0.44 +2.3 1,386,958 + ABZR87_RS06515 0.49 -0.3 1,386,958 + ABZR87_RS06515 0.49 -0.7 1,386,959 - ABZR87_RS06515 0.49 +3.0 1,387,011 + ABZR87_RS06515 0.54 +2.0 1,387,012 - ABZR87_RS06515 0.54 -1.7 1,387,012 - ABZR87_RS06515 0.54 -0.4 1,387,012 - ABZR87_RS06515 0.54 +0.1 1,387,012 - ABZR87_RS06515 0.54 +0.6
Or see this region's nucleotide sequence