Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05220

Experiment: no_plant_rhizosphere sample 2; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no_plant_rhizosphere sample 2; outgrowth in LB
1,095,022	+		ABZR87_RS05210	0.20	-1.2
1,095,103	+		ABZR87_RS05210	0.31	+0.1
1,095,103	+		ABZR87_RS05210	0.31	-0.4
1,095,104	-		ABZR87_RS05210	0.31	+0.9
1,095,274	+		ABZR87_RS05210	0.54	-0.8
1,095,275	-		ABZR87_RS05210	0.54	-0.6
1,095,332	-		ABZR87_RS05210	0.62	-0.8
1,095,332	-		ABZR87_RS05210	0.62	+0.2
1,095,382	+		ABZR87_RS05210	0.69	+0.4
1,095,383	-		ABZR87_RS05210	0.69	-0.4
1,095,383	-		ABZR87_RS05210	0.69	+0.5
1,095,383	-		ABZR87_RS05210	0.69	+2.4
1,095,421	+		ABZR87_RS05210	0.74	+0.5
1,095,421	+		ABZR87_RS05210	0.74	+0.8
1,095,421	+		ABZR87_RS05210	0.74	-0.8
1,095,421	+		ABZR87_RS05210	0.74	+0.2
1,095,421	+		ABZR87_RS05210	0.74	+0.2
1,095,422	-		ABZR87_RS05210	0.74	+0.2
1,095,422	-		ABZR87_RS05210	0.74	-0.7
1,095,422	-		ABZR87_RS05210	0.74	-0.4
1,095,422	-		ABZR87_RS05210	0.74	+0.8
1,095,422	-		ABZR87_RS05210	0.74	-0.3
1,095,436	+		ABZR87_RS05210	0.76	-1.2
1,095,437	-		ABZR87_RS05210	0.76	-0.6
1,095,437	-		ABZR87_RS05210	0.76	+0.2
1,095,439	+		ABZR87_RS05210	0.76	-0.7
1,095,439	+		ABZR87_RS05210	0.76	+1.2
1,095,439	+		ABZR87_RS05210	0.76	-1.0
1,095,439	+		ABZR87_RS05210	0.76	+0.9
1,095,440	-		ABZR87_RS05210	0.76	+0.4
1,095,440	-		ABZR87_RS05210	0.76	-1.1
1,095,440	-		ABZR87_RS05210	0.76	-1.0
1,095,496	+		ABZR87_RS05210	0.84	-1.2
1,095,565	+				+1.0
1,095,565	+				-1.8
1,095,565	+				+0.4
1,095,613	+				+0.8
1,095,613	+				-1.3
1,095,613	+				-0.4
1,095,613	+				+0.9
1,095,613	+				-1.6
1,095,614	-				+1.1
1,095,614	-				-1.2
1,095,614	-				-0.2
1,095,614	-				-0.8
1,095,614	-				+0.1
1,095,755	+		ABZR87_RS05215	0.33	-0.5
1,095,755	+		ABZR87_RS05215	0.33	+0.2
1,095,755	+		ABZR87_RS05215	0.33	+0.2
1,095,756	-		ABZR87_RS05215	0.33	-3.1
1,095,756	-		ABZR87_RS05215	0.33	+0.6
1,095,803	+		ABZR87_RS05215	0.57	+0.1
1,095,804	-		ABZR87_RS05215	0.58	+0.9
1,095,804	-		ABZR87_RS05215	0.58	+0.0
1,095,804	-		ABZR87_RS05215	0.58	-1.2
1,095,804	-		ABZR87_RS05215	0.58	-2.5
1,095,854	+		ABZR87_RS05215	0.84	-0.2
1,095,913	+				-1.0
1,095,913	+				-1.6
1,095,914	-				+1.0
1,095,976	+				-0.5
1,095,977	-				-0.6
1,096,114	+		ABZR87_RS05220	0.11	-1.0
1,096,114	+		ABZR87_RS05220	0.11	+0.2
1,096,115	-		ABZR87_RS05220	0.11	-0.5
1,096,232	-		ABZR87_RS05220	0.16	-1.7
1,096,232	-		ABZR87_RS05220	0.16	+1.2
1,096,372	+		ABZR87_RS05220	0.23	+0.8
1,096,372	+		ABZR87_RS05220	0.23	+0.4
1,096,372	+		ABZR87_RS05220	0.23	+0.2
1,096,373	-		ABZR87_RS05220	0.23	-1.5
1,096,373	-		ABZR87_RS05220	0.23	+0.0
1,096,549	+		ABZR87_RS05220	0.32	+0.8
1,096,734	-		ABZR87_RS05220	0.41	+1.0
1,096,780	+		ABZR87_RS05220	0.43	-1.5
1,096,780	+		ABZR87_RS05220	0.43	-0.4
1,096,781	-		ABZR87_RS05220	0.43	-0.3
1,096,781	-		ABZR87_RS05220	0.43	-2.0
1,096,781	-		ABZR87_RS05220	0.43	+0.1
1,097,107	+		ABZR87_RS05220	0.59	-2.2
1,097,108	-		ABZR87_RS05220	0.59	-0.8
1,097,108	-		ABZR87_RS05220	0.59	-2.0
1,097,162	-		ABZR87_RS05220	0.62	+0.4
1,097,314	+		ABZR87_RS05220	0.69	-0.1
1,097,314	+		ABZR87_RS05220	0.69	-0.2
1,097,314	+		ABZR87_RS05220	0.69	-0.0
1,097,314	+		ABZR87_RS05220	0.69	+1.4
1,097,315	-		ABZR87_RS05220	0.69	-0.5
1,097,315	-		ABZR87_RS05220	0.69	-1.0
1,097,315	-		ABZR87_RS05220	0.69	+0.1
1,097,315	-		ABZR87_RS05220	0.69	+1.2
1,097,315	-		ABZR87_RS05220	0.69	+1.1
1,097,315	-		ABZR87_RS05220	0.69	+2.0
1,097,323	+		ABZR87_RS05220	0.70	+0.3
1,097,323	+		ABZR87_RS05220	0.70	-2.4
1,097,324	-		ABZR87_RS05220	0.70	-1.0
1,097,611	+		ABZR87_RS05220	0.84	+0.4
1,097,611	+		ABZR87_RS05220	0.84	-0.6
1,097,611	+		ABZR87_RS05220	0.84	-1.3
1,097,612	-		ABZR87_RS05220	0.84	+0.6
1,097,612	-		ABZR87_RS05220	0.84	-2.8
1,097,710	+		ABZR87_RS05220	0.88	-2.3
1,097,710	+		ABZR87_RS05220	0.88	-0.5
1,097,711	-		ABZR87_RS05220	0.88	-1.0
1,097,728	+		ABZR87_RS05220	0.89	+0.8
1,097,728	+		ABZR87_RS05220	0.89	-0.2
1,097,794	+				+0.6
1,097,794	+				+1.2
1,097,795	-				+1.2
1,097,795	-				-0.0
1,097,795	-				-0.9
1,097,795	-				+1.9
1,097,795	-				+1.1
1,097,797	+				-1.3
1,097,797	+				+0.5
1,097,797	+				-1.0
1,097,797	+				-1.7
1,097,797	+				-0.8
1,097,803	+				-2.3
1,097,804	-				-0.3
1,097,815	+				-0.9
1,097,815	+				+1.8
1,097,815	+				-2.4
1,097,815	+				+0.1
1,097,815	+				+0.0
1,097,816	-				-0.0
1,097,816	-				-0.8
1,097,816	-				+0.2
1,097,823	+				-0.6
1,097,823	+				-2.2
1,097,824	-				-0.2
1,097,824	-				-0.2
1,097,836	-				-0.7
1,098,041	+				-0.4
1,098,041	+				-0.8
1,098,041	+				-0.5
1,098,041	+				+1.2
1,098,042	-				-0.3
1,098,042	-				+1.4
1,098,042	-				-0.2
1,098,044	+				-0.3
1,098,044	+				+0.7
1,098,044	+				+1.1
1,098,044	+				-0.5
1,098,044	+				+1.1
1,098,044	+				+0.8
1,098,044	+				-0.0
1,098,044	+				+0.2
1,098,044	+				-0.6
1,098,044	+				-0.7
1,098,045	-				+2.7
1,098,045	-				-1.2
1,098,045	-				-0.2
1,098,045	-				+0.7
1,098,045	-				-0.4
1,098,081	+				-0.8
1,098,082	-				+0.8
1,098,082	-				-0.8
1,098,098	+				+0.5
1,098,098	+				+0.1
1,098,098	+				-0.5
1,098,098	+				+0.4
1,098,098	+				+1.4
1,098,099	-				-0.1
1,098,099	-				+0.3
1,098,104	+				+1.3
1,098,104	+				-0.7
1,098,105	-				+0.9
1,098,105	-				-2.1
1,098,174	+				+0.2
1,098,174	+				-0.8
1,098,175	-				+1.3
1,098,175	-				+2.1
1,098,340	+		ABZR87_RS05225	0.11	+0.1
1,098,340	+		ABZR87_RS05225	0.11	-1.5
1,098,340	+		ABZR87_RS05225	0.11	-1.1
1,098,340	+		ABZR87_RS05225	0.11	+1.6
1,098,340	+		ABZR87_RS05225	0.11	+0.7
1,098,340	+		ABZR87_RS05225	0.11	-1.1
1,098,341	-		ABZR87_RS05225	0.12	+0.4
1,098,473	-		ABZR87_RS05225	0.21	-0.8
1,098,484	+		ABZR87_RS05225	0.21	-0.0
1,098,484	+		ABZR87_RS05225	0.21	-2.5
1,098,485	-		ABZR87_RS05225	0.22	+1.8
1,098,628	+		ABZR87_RS05225	0.31	+0.4
1,098,629	-		ABZR87_RS05225	0.32	-0.1
1,098,677	-		ABZR87_RS05225	0.35	+0.2
1,098,724	+		ABZR87_RS05225	0.38	-1.7
1,098,725	-		ABZR87_RS05225	0.38	-0.7