Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04660 and ABZR87_RS04665 are separated by 84 nucleotides ABZR87_RS04665 and ABZR87_RS04670 are separated by 102 nucleotides
ABZR87_RS04660: ABZR87_RS04660 - bifunctional allantoicase/(S)-ureidoglycine aminohydrolase, at 974,312 to 975,148
_RS04660
ABZR87_RS04665: ABZR87_RS04665 - trans-aconitate 2-methyltransferase, at 975,233 to 976,012
_RS04665
ABZR87_RS04670: ABZR87_RS04670 - LysR family transcriptional regulator, at 976,115 to 977,011
_RS04670
Position (kb) 975
976
977 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 974.252 kb on + strand at 974.252 kb on + strand at 974.253 kb on - strand at 974.317 kb on + strand at 974.317 kb on + strand at 974.317 kb on + strand at 974.318 kb on - strand at 974.318 kb on - strand at 974.318 kb on - strand at 974.327 kb on + strand at 974.327 kb on + strand at 974.327 kb on + strand at 974.327 kb on + strand at 974.327 kb on + strand at 974.328 kb on - strand at 974.328 kb on - strand at 974.328 kb on - strand at 974.328 kb on - strand at 974.331 kb on - strand at 974.331 kb on - strand at 974.399 kb on + strand, within ABZR87_RS04660 at 974.400 kb on - strand, within ABZR87_RS04660 at 974.522 kb on + strand, within ABZR87_RS04660 at 974.522 kb on + strand, within ABZR87_RS04660 at 974.522 kb on + strand, within ABZR87_RS04660 at 974.522 kb on + strand, within ABZR87_RS04660 at 974.523 kb on - strand, within ABZR87_RS04660 at 974.523 kb on - strand, within ABZR87_RS04660 at 974.660 kb on + strand, within ABZR87_RS04660 at 974.744 kb on + strand, within ABZR87_RS04660 at 974.744 kb on + strand, within ABZR87_RS04660 at 974.745 kb on - strand, within ABZR87_RS04660 at 974.745 kb on - strand, within ABZR87_RS04660 at 974.745 kb on - strand, within ABZR87_RS04660 at 974.960 kb on + strand, within ABZR87_RS04660 at 974.960 kb on + strand, within ABZR87_RS04660 at 974.960 kb on + strand, within ABZR87_RS04660 at 974.960 kb on + strand, within ABZR87_RS04660 at 974.960 kb on + strand, within ABZR87_RS04660 at 974.961 kb on - strand, within ABZR87_RS04660 at 974.961 kb on - strand, within ABZR87_RS04660 at 974.961 kb on - strand, within ABZR87_RS04660 at 974.961 kb on - strand, within ABZR87_RS04660 at 974.961 kb on - strand, within ABZR87_RS04660 at 974.961 kb on - strand, within ABZR87_RS04660 at 974.985 kb on - strand, within ABZR87_RS04660 at 975.062 kb on + strand, within ABZR87_RS04660 at 975.062 kb on + strand, within ABZR87_RS04660 at 975.062 kb on + strand, within ABZR87_RS04660 at 975.063 kb on - strand, within ABZR87_RS04660 at 975.063 kb on - strand, within ABZR87_RS04660 at 975.090 kb on - strand at 975.098 kb on + strand at 975.098 kb on + strand at 975.098 kb on + strand at 975.099 kb on - strand at 975.099 kb on - strand at 975.099 kb on - strand at 975.099 kb on - strand at 975.166 kb on + strand at 975.167 kb on - strand at 975.167 kb on - strand at 975.167 kb on - strand at 975.167 kb on - strand at 975.234 kb on + strand at 975.234 kb on + strand at 975.235 kb on - strand at 975.235 kb on - strand at 975.304 kb on - strand at 975.304 kb on - strand at 975.304 kb on - strand at 975.341 kb on + strand, within ABZR87_RS04665 at 975.341 kb on + strand, within ABZR87_RS04665 at 975.342 kb on - strand, within ABZR87_RS04665 at 975.342 kb on - strand, within ABZR87_RS04665 at 975.444 kb on + strand, within ABZR87_RS04665 at 975.444 kb on + strand, within ABZR87_RS04665 at 975.444 kb on + strand, within ABZR87_RS04665 at 975.444 kb on + strand, within ABZR87_RS04665 at 975.444 kb on + strand, within ABZR87_RS04665 at 975.445 kb on - strand, within ABZR87_RS04665 at 975.445 kb on - strand, within ABZR87_RS04665 at 975.445 kb on - strand, within ABZR87_RS04665 at 975.445 kb on - strand, within ABZR87_RS04665 at 975.445 kb on - strand, within ABZR87_RS04665 at 975.445 kb on - strand, within ABZR87_RS04665 at 975.445 kb on - strand, within ABZR87_RS04665 at 975.445 kb on - strand, within ABZR87_RS04665 at 975.445 kb on - strand, within ABZR87_RS04665 at 975.445 kb on - strand, within ABZR87_RS04665 at 975.445 kb on - strand, within ABZR87_RS04665 at 975.445 kb on - strand, within ABZR87_RS04665 at 975.445 kb on - strand, within ABZR87_RS04665 at 975.495 kb on + strand, within ABZR87_RS04665 at 975.495 kb on + strand, within ABZR87_RS04665 at 975.495 kb on + strand, within ABZR87_RS04665 at 975.496 kb on - strand, within ABZR87_RS04665 at 975.498 kb on + strand, within ABZR87_RS04665 at 975.498 kb on + strand, within ABZR87_RS04665 at 975.498 kb on + strand, within ABZR87_RS04665 at 975.723 kb on + strand, within ABZR87_RS04665 at 975.904 kb on + strand, within ABZR87_RS04665 at 975.955 kb on + strand at 975.955 kb on + strand at 975.956 kb on - strand at 975.956 kb on - strand at 975.978 kb on + strand at 975.978 kb on + strand at 975.979 kb on - strand at 975.979 kb on - strand at 975.990 kb on + strand at 975.990 kb on + strand at 975.990 kb on + strand at 975.991 kb on - strand at 976.107 kb on + strand at 976.174 kb on + strand at 976.174 kb on + strand at 976.433 kb on + strand, within ABZR87_RS04670 at 976.434 kb on - strand, within ABZR87_RS04670 at 976.434 kb on - strand, within ABZR87_RS04670 at 976.434 kb on - strand, within ABZR87_RS04670 at 976.614 kb on - strand, within ABZR87_RS04670 at 976.614 kb on - strand, within ABZR87_RS04670 at 976.614 kb on - strand, within ABZR87_RS04670 at 976.775 kb on + strand, within ABZR87_RS04670 at 976.775 kb on + strand, within ABZR87_RS04670 at 976.775 kb on + strand, within ABZR87_RS04670 at 976.775 kb on + strand, within ABZR87_RS04670 at 976.775 kb on + strand, within ABZR87_RS04670 at 976.775 kb on + strand, within ABZR87_RS04670 at 976.775 kb on + strand, within ABZR87_RS04670 at 976.776 kb on - strand, within ABZR87_RS04670 at 976.776 kb on - strand, within ABZR87_RS04670 at 976.882 kb on + strand, within ABZR87_RS04670 at 976.883 kb on - strand, within ABZR87_RS04670 at 976.883 kb on - strand, within ABZR87_RS04670 at 976.951 kb on - strand at 976.951 kb on - strand at 976.973 kb on + strand at 976.973 kb on + strand at 976.974 kb on - strand at 976.974 kb on - strand at 976.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 974,252 + +0.2 974,252 + -1.0 974,253 - -0.4 974,317 + -1.0 974,317 + -2.4 974,317 + -0.8 974,318 - -3.6 974,318 - +0.4 974,318 - +0.2 974,327 + +0.1 974,327 + +0.2 974,327 + -0.3 974,327 + -0.5 974,327 + +0.0 974,328 - -3.4 974,328 - +1.2 974,328 - -0.1 974,328 - -0.6 974,331 - -0.5 974,331 - +0.8 974,399 + ABZR87_RS04660 0.10 -0.2 974,400 - ABZR87_RS04660 0.11 +0.0 974,522 + ABZR87_RS04660 0.25 +0.7 974,522 + ABZR87_RS04660 0.25 -1.6 974,522 + ABZR87_RS04660 0.25 +2.0 974,522 + ABZR87_RS04660 0.25 +0.1 974,523 - ABZR87_RS04660 0.25 -0.5 974,523 - ABZR87_RS04660 0.25 -1.4 974,660 + ABZR87_RS04660 0.42 -0.0 974,744 + ABZR87_RS04660 0.52 -1.1 974,744 + ABZR87_RS04660 0.52 -1.6 974,745 - ABZR87_RS04660 0.52 +0.1 974,745 - ABZR87_RS04660 0.52 -0.1 974,745 - ABZR87_RS04660 0.52 -0.3 974,960 + ABZR87_RS04660 0.77 +0.4 974,960 + ABZR87_RS04660 0.77 -0.4 974,960 + ABZR87_RS04660 0.77 +0.2 974,960 + ABZR87_RS04660 0.77 -0.8 974,960 + ABZR87_RS04660 0.77 +0.8 974,961 - ABZR87_RS04660 0.78 -2.4 974,961 - ABZR87_RS04660 0.78 +0.6 974,961 - ABZR87_RS04660 0.78 -0.3 974,961 - ABZR87_RS04660 0.78 -0.7 974,961 - ABZR87_RS04660 0.78 +0.3 974,961 - ABZR87_RS04660 0.78 -1.1 974,985 - ABZR87_RS04660 0.80 -0.5 975,062 + ABZR87_RS04660 0.90 -2.8 975,062 + ABZR87_RS04660 0.90 +1.0 975,062 + ABZR87_RS04660 0.90 -1.2 975,063 - ABZR87_RS04660 0.90 -1.1 975,063 - ABZR87_RS04660 0.90 -0.5 975,090 - -1.9 975,098 + -0.3 975,098 + -0.8 975,098 + +0.3 975,099 - +0.0 975,099 - -0.9 975,099 - +0.5 975,099 - -2.4 975,166 + +0.2 975,167 - +1.0 975,167 - +0.5 975,167 - +0.9 975,167 - +1.9 975,234 + +0.5 975,234 + -0.3 975,235 - -0.4 975,235 - -0.0 975,304 - +0.3 975,304 - +0.3 975,304 - -0.5 975,341 + ABZR87_RS04665 0.14 -0.8 975,341 + ABZR87_RS04665 0.14 +0.5 975,342 - ABZR87_RS04665 0.14 -2.3 975,342 - ABZR87_RS04665 0.14 -0.2 975,444 + ABZR87_RS04665 0.27 +0.1 975,444 + ABZR87_RS04665 0.27 +0.7 975,444 + ABZR87_RS04665 0.27 +0.9 975,444 + ABZR87_RS04665 0.27 +1.1 975,444 + ABZR87_RS04665 0.27 -1.1 975,445 - ABZR87_RS04665 0.27 +1.0 975,445 - ABZR87_RS04665 0.27 +0.4 975,445 - ABZR87_RS04665 0.27 +0.9 975,445 - ABZR87_RS04665 0.27 -0.5 975,445 - ABZR87_RS04665 0.27 +1.0 975,445 - ABZR87_RS04665 0.27 -0.1 975,445 - ABZR87_RS04665 0.27 -0.8 975,445 - ABZR87_RS04665 0.27 -1.2 975,445 - ABZR87_RS04665 0.27 +1.4 975,445 - ABZR87_RS04665 0.27 +5.5 975,445 - ABZR87_RS04665 0.27 -0.3 975,445 - ABZR87_RS04665 0.27 -0.4 975,445 - ABZR87_RS04665 0.27 +0.0 975,495 + ABZR87_RS04665 0.34 +2.0 975,495 + ABZR87_RS04665 0.34 +0.2 975,495 + ABZR87_RS04665 0.34 +0.4 975,496 - ABZR87_RS04665 0.34 -1.1 975,498 + ABZR87_RS04665 0.34 -2.3 975,498 + ABZR87_RS04665 0.34 -0.6 975,498 + ABZR87_RS04665 0.34 +0.7 975,723 + ABZR87_RS04665 0.63 +0.3 975,904 + ABZR87_RS04665 0.86 -1.9 975,955 + -0.3 975,955 + -2.5 975,956 - -1.5 975,956 - -0.1 975,978 + -1.5 975,978 + +0.5 975,979 - -1.0 975,979 - -0.4 975,990 + -0.9 975,990 + +0.8 975,990 + -0.7 975,991 - +0.9 976,107 + +0.3 976,174 + +0.5 976,174 + -0.6 976,433 + ABZR87_RS04670 0.35 +1.5 976,434 - ABZR87_RS04670 0.36 -0.1 976,434 - ABZR87_RS04670 0.36 +0.7 976,434 - ABZR87_RS04670 0.36 +0.8 976,614 - ABZR87_RS04670 0.56 -1.1 976,614 - ABZR87_RS04670 0.56 -1.6 976,614 - ABZR87_RS04670 0.56 -0.5 976,775 + ABZR87_RS04670 0.74 +0.0 976,775 + ABZR87_RS04670 0.74 -0.2 976,775 + ABZR87_RS04670 0.74 +0.9 976,775 + ABZR87_RS04670 0.74 -0.7 976,775 + ABZR87_RS04670 0.74 -0.8 976,775 + ABZR87_RS04670 0.74 +0.6 976,775 + ABZR87_RS04670 0.74 +0.2 976,776 - ABZR87_RS04670 0.74 +0.2 976,776 - ABZR87_RS04670 0.74 +1.3 976,882 + ABZR87_RS04670 0.86 -0.2 976,883 - ABZR87_RS04670 0.86 +1.0 976,883 - ABZR87_RS04670 0.86 +0.5 976,951 - +0.0 976,951 - +2.5 976,973 + +0.7 976,973 + +0.3 976,974 - +0.0 976,974 - -1.5 976,974 - +0.7
Or see this region's nucleotide sequence