Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04555 and ABZR87_RS04560 are separated by 19 nucleotides ABZR87_RS04560 and ABZR87_RS04565 are separated by 23 nucleotides ABZR87_RS04565 and ABZR87_RS04570 are separated by 288 nucleotides
ABZR87_RS04555: ABZR87_RS04555 - helix-turn-helix transcriptional regulator, at 953,792 to 954,685
_RS04555
ABZR87_RS04560: ABZR87_RS04560 - hydrolase, at 954,705 to 955,304
_RS04560
ABZR87_RS04565: ABZR87_RS04565 - PaaI family thioesterase, at 955,328 to 955,762
_RS04565
ABZR87_RS04570: ABZR87_RS04570 - porin, at 956,051 to 957,178
_RS04570
Position (kb) 955
956 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.363 kb on - strand, within ABZR87_RS04555 at 954.363 kb on - strand, within ABZR87_RS04555 at 954.363 kb on - strand, within ABZR87_RS04555 at 954.374 kb on + strand, within ABZR87_RS04555 at 954.375 kb on - strand, within ABZR87_RS04555 at 954.375 kb on - strand, within ABZR87_RS04555 at 954.375 kb on - strand, within ABZR87_RS04555 at 954.375 kb on - strand, within ABZR87_RS04555 at 954.523 kb on + strand, within ABZR87_RS04555 at 954.611 kb on + strand at 954.612 kb on - strand at 954.612 kb on - strand at 954.612 kb on - strand at 954.612 kb on - strand at 954.659 kb on + strand at 954.659 kb on + strand at 954.659 kb on + strand at 954.659 kb on + strand at 954.659 kb on + strand at 954.659 kb on + strand at 954.660 kb on - strand at 954.660 kb on - strand at 954.660 kb on - strand at 954.660 kb on - strand at 954.765 kb on + strand, within ABZR87_RS04560 at 954.765 kb on + strand, within ABZR87_RS04560 at 954.765 kb on + strand, within ABZR87_RS04560 at 954.766 kb on - strand, within ABZR87_RS04560 at 954.955 kb on + strand, within ABZR87_RS04560 at 954.956 kb on - strand, within ABZR87_RS04560 at 955.099 kb on + strand, within ABZR87_RS04560 at 955.099 kb on + strand, within ABZR87_RS04560 at 955.100 kb on - strand, within ABZR87_RS04560 at 955.100 kb on - strand, within ABZR87_RS04560 at 955.185 kb on + strand, within ABZR87_RS04560 at 955.186 kb on - strand, within ABZR87_RS04560 at 955.199 kb on + strand, within ABZR87_RS04560 at 955.200 kb on - strand, within ABZR87_RS04560 at 955.329 kb on + strand at 955.330 kb on - strand at 955.331 kb on - strand at 955.463 kb on + strand, within ABZR87_RS04565 at 955.509 kb on + strand, within ABZR87_RS04565 at 955.531 kb on + strand, within ABZR87_RS04565 at 955.806 kb on - strand at 955.887 kb on + strand at 955.894 kb on + strand at 955.895 kb on - strand at 955.895 kb on - strand at 955.895 kb on - strand at 955.944 kb on + strand at 955.945 kb on - strand at 955.945 kb on - strand at 955.945 kb on - strand at 955.945 kb on - strand at 955.945 kb on - strand at 955.945 kb on - strand at 955.945 kb on - strand at 956.144 kb on + strand at 956.144 kb on + strand at 956.291 kb on + strand, within ABZR87_RS04570 at 956.395 kb on + strand, within ABZR87_RS04570 at 956.396 kb on - strand, within ABZR87_RS04570 at 956.447 kb on + strand, within ABZR87_RS04570 at 956.447 kb on + strand, within ABZR87_RS04570 at 956.448 kb on - strand, within ABZR87_RS04570 at 956.459 kb on + strand, within ABZR87_RS04570 at 956.459 kb on + strand, within ABZR87_RS04570 at 956.460 kb on - strand, within ABZR87_RS04570 at 956.496 kb on - strand, within ABZR87_RS04570 at 956.531 kb on + strand, within ABZR87_RS04570 at 956.531 kb on + strand, within ABZR87_RS04570 at 956.532 kb on - strand, within ABZR87_RS04570 at 956.532 kb on - strand, within ABZR87_RS04570 at 956.540 kb on - strand, within ABZR87_RS04570 at 956.619 kb on - strand, within ABZR87_RS04570 at 956.681 kb on + strand, within ABZR87_RS04570 at 956.681 kb on + strand, within ABZR87_RS04570 at 956.681 kb on + strand, within ABZR87_RS04570 at 956.682 kb on - strand, within ABZR87_RS04570 at 956.682 kb on - strand, within ABZR87_RS04570 at 956.682 kb on - strand, within ABZR87_RS04570 at 956.682 kb on - strand, within ABZR87_RS04570 at 956.682 kb on - strand, within ABZR87_RS04570 at 956.753 kb on + strand, within ABZR87_RS04570 at 956.754 kb on - strand, within ABZR87_RS04570
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 954,362 + ABZR87_RS04555 0.64 +0.1 954,362 + ABZR87_RS04555 0.64 -0.5 954,362 + ABZR87_RS04555 0.64 -0.6 954,362 + ABZR87_RS04555 0.64 -0.5 954,362 + ABZR87_RS04555 0.64 +0.4 954,362 + ABZR87_RS04555 0.64 +0.1 954,362 + ABZR87_RS04555 0.64 +0.9 954,362 + ABZR87_RS04555 0.64 +0.4 954,362 + ABZR87_RS04555 0.64 +0.2 954,362 + ABZR87_RS04555 0.64 -0.7 954,362 + ABZR87_RS04555 0.64 +0.9 954,362 + ABZR87_RS04555 0.64 -1.3 954,362 + ABZR87_RS04555 0.64 -0.1 954,362 + ABZR87_RS04555 0.64 -0.5 954,362 + ABZR87_RS04555 0.64 -0.5 954,363 - ABZR87_RS04555 0.64 +0.5 954,363 - ABZR87_RS04555 0.64 +0.9 954,363 - ABZR87_RS04555 0.64 -0.8 954,374 + ABZR87_RS04555 0.65 +0.1 954,375 - ABZR87_RS04555 0.65 -0.0 954,375 - ABZR87_RS04555 0.65 -0.4 954,375 - ABZR87_RS04555 0.65 -0.2 954,375 - ABZR87_RS04555 0.65 -0.2 954,523 + ABZR87_RS04555 0.82 -0.7 954,611 + -1.7 954,612 - +0.6 954,612 - -0.3 954,612 - +1.8 954,612 - -0.3 954,659 + +1.1 954,659 + +0.9 954,659 + -0.4 954,659 + -2.4 954,659 + +0.5 954,659 + +1.0 954,660 - -2.6 954,660 - +0.8 954,660 - +0.6 954,660 - +1.7 954,765 + ABZR87_RS04560 0.10 +1.8 954,765 + ABZR87_RS04560 0.10 -1.6 954,765 + ABZR87_RS04560 0.10 -0.4 954,766 - ABZR87_RS04560 0.10 +1.4 954,955 + ABZR87_RS04560 0.42 -0.5 954,956 - ABZR87_RS04560 0.42 -1.2 955,099 + ABZR87_RS04560 0.66 -0.4 955,099 + ABZR87_RS04560 0.66 +0.5 955,100 - ABZR87_RS04560 0.66 -0.5 955,100 - ABZR87_RS04560 0.66 -1.2 955,185 + ABZR87_RS04560 0.80 -0.6 955,186 - ABZR87_RS04560 0.80 +1.5 955,199 + ABZR87_RS04560 0.82 -0.3 955,200 - ABZR87_RS04560 0.82 -0.9 955,329 + -0.4 955,330 - +0.2 955,331 - -1.8 955,463 + ABZR87_RS04565 0.31 -0.7 955,509 + ABZR87_RS04565 0.42 -0.0 955,531 + ABZR87_RS04565 0.47 -0.1 955,806 - +0.6 955,887 + -0.5 955,894 + +0.0 955,895 - +1.6 955,895 - +1.8 955,895 - -0.7 955,944 + -0.1 955,945 - -0.5 955,945 - -0.0 955,945 - -0.3 955,945 - -1.4 955,945 - +0.1 955,945 - +0.6 955,945 - +0.4 956,144 + -1.0 956,144 + +1.0 956,291 + ABZR87_RS04570 0.21 +0.9 956,395 + ABZR87_RS04570 0.30 -0.3 956,396 - ABZR87_RS04570 0.31 -0.0 956,447 + ABZR87_RS04570 0.35 -0.6 956,447 + ABZR87_RS04570 0.35 +1.0 956,448 - ABZR87_RS04570 0.35 +0.6 956,459 + ABZR87_RS04570 0.36 -0.9 956,459 + ABZR87_RS04570 0.36 +2.6 956,460 - ABZR87_RS04570 0.36 -2.0 956,496 - ABZR87_RS04570 0.39 +1.6 956,531 + ABZR87_RS04570 0.43 -0.5 956,531 + ABZR87_RS04570 0.43 +0.5 956,532 - ABZR87_RS04570 0.43 -0.7 956,532 - ABZR87_RS04570 0.43 -1.6 956,540 - ABZR87_RS04570 0.43 -0.7 956,619 - ABZR87_RS04570 0.50 +0.6 956,681 + ABZR87_RS04570 0.56 +6.3 956,681 + ABZR87_RS04570 0.56 +1.2 956,681 + ABZR87_RS04570 0.56 -0.5 956,682 - ABZR87_RS04570 0.56 +2.4 956,682 - ABZR87_RS04570 0.56 +2.9 956,682 - ABZR87_RS04570 0.56 +0.9 956,682 - ABZR87_RS04570 0.56 -1.0 956,682 - ABZR87_RS04570 0.56 -0.7 956,753 + ABZR87_RS04570 0.62 +0.2 956,754 - ABZR87_RS04570 0.62 -0.0
Or see this region's nucleotide sequence