Experiment: no_plant_rhizosphere sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04295 and ABZR87_RS04300 are separated by 145 nucleotides ABZR87_RS04300 and ABZR87_RS04305 are separated by 112 nucleotides ABZR87_RS04305 and ABZR87_RS04310 are separated by 16 nucleotides
ABZR87_RS04295: ABZR87_RS04295 - HU family DNA-binding protein, at 895,956 to 896,234
_RS04295
ABZR87_RS04300: ABZR87_RS04300 - DUF2272 domain-containing protein, at 896,380 to 897,327
_RS04300
ABZR87_RS04305: ABZR87_RS04305 - class II aldolase/adducin family protein, at 897,440 to 898,264
_RS04305
ABZR87_RS04310: ABZR87_RS04310 - 2-dehydropantoate 2-reductase, at 898,281 to 899,258
_RS04310
Position (kb) 896
897
898 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 895.461 kb on + strand at 895.462 kb on - strand at 895.462 kb on - strand at 895.465 kb on + strand at 895.465 kb on + strand at 895.465 kb on + strand at 895.465 kb on + strand at 895.562 kb on + strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.620 kb on + strand at 895.621 kb on - strand at 895.634 kb on + strand at 895.638 kb on + strand at 895.652 kb on - strand at 895.661 kb on + strand at 895.662 kb on - strand at 895.662 kb on - strand at 895.665 kb on + strand at 895.665 kb on + strand at 895.665 kb on + strand at 895.668 kb on + strand at 895.668 kb on + strand at 895.669 kb on - strand at 895.669 kb on - strand at 895.669 kb on - strand at 895.669 kb on - strand at 895.669 kb on - strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.672 kb on - strand at 895.672 kb on - strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.680 kb on + strand at 895.681 kb on + strand at 895.681 kb on - strand at 895.682 kb on + strand at 895.682 kb on + strand at 895.682 kb on + strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.686 kb on + strand at 895.686 kb on + strand at 895.686 kb on + strand at 895.686 kb on + strand at 895.686 kb on + strand at 895.687 kb on - strand at 895.687 kb on - strand at 895.687 kb on - strand at 895.687 kb on - strand at 895.687 kb on - strand at 895.698 kb on + strand at 895.698 kb on + strand at 895.699 kb on - strand at 895.804 kb on + strand at 895.804 kb on + strand at 895.805 kb on - strand at 895.805 kb on - strand at 895.847 kb on + strand at 895.848 kb on - strand at 895.848 kb on - strand at 895.930 kb on + strand at 895.930 kb on + strand at 895.931 kb on - strand at 895.931 kb on - strand at 895.931 kb on - strand at 895.931 kb on - strand at 895.931 kb on - strand at 895.934 kb on + strand at 895.935 kb on - strand at 895.935 kb on - strand at 895.935 kb on - strand at 895.996 kb on + strand, within ABZR87_RS04295 at 895.996 kb on + strand, within ABZR87_RS04295 at 895.997 kb on - strand, within ABZR87_RS04295 at 896.102 kb on + strand, within ABZR87_RS04295 at 896.102 kb on + strand, within ABZR87_RS04295 at 896.102 kb on + strand, within ABZR87_RS04295 at 896.132 kb on + strand, within ABZR87_RS04295 at 896.132 kb on + strand, within ABZR87_RS04295 at 896.133 kb on - strand, within ABZR87_RS04295 at 896.133 kb on - strand, within ABZR87_RS04295 at 896.133 kb on - strand, within ABZR87_RS04295 at 896.133 kb on - strand, within ABZR87_RS04295 at 896.327 kb on + strand at 896.328 kb on - strand at 896.418 kb on + strand at 896.419 kb on - strand at 896.625 kb on + strand, within ABZR87_RS04300 at 896.625 kb on + strand, within ABZR87_RS04300 at 896.625 kb on + strand, within ABZR87_RS04300 at 896.626 kb on - strand, within ABZR87_RS04300 at 896.626 kb on - strand, within ABZR87_RS04300 at 896.626 kb on - strand, within ABZR87_RS04300 at 896.629 kb on + strand, within ABZR87_RS04300 at 896.629 kb on + strand, within ABZR87_RS04300 at 896.629 kb on + strand, within ABZR87_RS04300 at 896.629 kb on + strand, within ABZR87_RS04300 at 896.629 kb on + strand, within ABZR87_RS04300 at 896.629 kb on + strand, within ABZR87_RS04300 at 896.629 kb on + strand, within ABZR87_RS04300 at 896.629 kb on + strand, within ABZR87_RS04300 at 896.629 kb on + strand, within ABZR87_RS04300 at 896.629 kb on + strand, within ABZR87_RS04300 at 896.629 kb on + strand, within ABZR87_RS04300 at 896.629 kb on + strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.765 kb on + strand, within ABZR87_RS04300 at 896.766 kb on - strand, within ABZR87_RS04300 at 896.849 kb on - strand, within ABZR87_RS04300 at 896.849 kb on - strand, within ABZR87_RS04300 at 896.992 kb on + strand, within ABZR87_RS04300 at 896.992 kb on + strand, within ABZR87_RS04300 at 896.992 kb on + strand, within ABZR87_RS04300 at 896.993 kb on - strand, within ABZR87_RS04300 at 897.085 kb on - strand, within ABZR87_RS04300 at 897.085 kb on - strand, within ABZR87_RS04300 at 897.085 kb on - strand, within ABZR87_RS04300 at 897.085 kb on - strand, within ABZR87_RS04300 at 897.275 kb on - strand at 897.275 kb on - strand at 897.302 kb on + strand at 897.302 kb on + strand at 897.302 kb on + strand at 897.302 kb on + strand at 897.302 kb on + strand at 897.302 kb on + strand at 897.303 kb on - strand at 897.303 kb on - strand at 897.325 kb on + strand at 897.326 kb on - strand at 897.341 kb on + strand at 897.341 kb on + strand at 897.341 kb on + strand at 897.341 kb on + strand at 897.341 kb on + strand at 897.342 kb on - strand at 897.342 kb on - strand at 897.342 kb on - strand at 897.342 kb on - strand at 897.342 kb on - strand at 897.549 kb on - strand, within ABZR87_RS04305 at 897.587 kb on + strand, within ABZR87_RS04305 at 897.587 kb on + strand, within ABZR87_RS04305 at 897.587 kb on + strand, within ABZR87_RS04305 at 897.588 kb on - strand, within ABZR87_RS04305 at 897.588 kb on - strand, within ABZR87_RS04305 at 897.677 kb on + strand, within ABZR87_RS04305 at 897.677 kb on + strand, within ABZR87_RS04305 at 897.677 kb on + strand, within ABZR87_RS04305 at 897.677 kb on + strand, within ABZR87_RS04305 at 897.677 kb on + strand, within ABZR87_RS04305 at 897.678 kb on - strand, within ABZR87_RS04305 at 897.678 kb on - strand, within ABZR87_RS04305 at 897.678 kb on - strand, within ABZR87_RS04305 at 897.678 kb on - strand, within ABZR87_RS04305 at 897.678 kb on - strand, within ABZR87_RS04305 at 897.678 kb on - strand, within ABZR87_RS04305 at 897.679 kb on + strand, within ABZR87_RS04305 at 897.680 kb on - strand, within ABZR87_RS04305 at 897.706 kb on - strand, within ABZR87_RS04305 at 897.926 kb on + strand, within ABZR87_RS04305 at 897.927 kb on - strand, within ABZR87_RS04305 at 897.947 kb on - strand, within ABZR87_RS04305 at 897.947 kb on - strand, within ABZR87_RS04305 at 898.253 kb on + strand at 898.254 kb on - strand at 898.280 kb on + strand at 898.280 kb on + strand at 898.280 kb on + strand at 898.280 kb on + strand at 898.281 kb on - strand at 898.323 kb on + strand at 898.323 kb on + strand at 898.324 kb on - strand at 898.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 2; outgrowth in LB remove 895,461 + +0.2 895,462 - +1.5 895,462 - +0.8 895,465 + +0.6 895,465 + -2.9 895,465 + -1.4 895,465 + +1.2 895,562 + -0.6 895,563 - -0.4 895,563 - +0.8 895,563 - +0.6 895,563 - +0.3 895,563 - +0.8 895,563 - +1.5 895,620 + +1.0 895,621 - +0.8 895,634 + -1.2 895,638 + +0.6 895,652 - -0.6 895,661 + +1.6 895,662 - +0.4 895,662 - -0.3 895,665 + +1.6 895,665 + -0.5 895,665 + +0.6 895,668 + -2.2 895,668 + -0.3 895,669 - -0.4 895,669 - -0.3 895,669 - +0.0 895,669 - -2.6 895,669 - +0.4 895,671 + -1.8 895,671 + -0.8 895,671 + +1.9 895,671 + +0.6 895,671 + -0.1 895,671 + +0.4 895,672 - -1.8 895,672 - -0.5 895,674 + +0.1 895,674 + -1.6 895,674 + +0.6 895,674 + +0.3 895,674 + +0.8 895,674 + -0.4 895,674 + +0.2 895,674 + -1.7 895,674 + +0.2 895,674 + -0.3 895,674 + +0.1 895,674 + -1.3 895,675 - -0.6 895,675 - -0.8 895,675 - -1.0 895,675 - -1.1 895,675 - -0.4 895,675 - -3.1 895,675 - -0.5 895,675 - +0.6 895,675 - +0.2 895,675 - -0.0 895,675 - +0.4 895,675 - -0.3 895,675 - +0.2 895,680 + +2.3 895,681 + -0.0 895,681 - +0.4 895,682 + -2.3 895,682 + +0.9 895,682 + +0.8 895,683 - +0.2 895,683 - +0.1 895,683 - -0.2 895,683 - -1.1 895,683 - +0.5 895,683 - -1.0 895,683 - +0.5 895,683 - +0.3 895,683 - -1.3 895,683 - -0.2 895,683 - -0.5 895,686 + -0.4 895,686 + +1.7 895,686 + -0.2 895,686 + +0.6 895,686 + -1.8 895,687 - -1.4 895,687 - +0.1 895,687 - -1.5 895,687 - -0.2 895,687 - -0.1 895,698 + +0.1 895,698 + +0.5 895,699 - -1.5 895,804 + +0.6 895,804 + -0.5 895,805 - -0.5 895,805 - -2.3 895,847 + +0.7 895,848 - +0.8 895,848 - -0.8 895,930 + +1.3 895,930 + -1.9 895,931 - -0.3 895,931 - -3.2 895,931 - -1.1 895,931 - +1.8 895,931 - -2.4 895,934 + -0.1 895,935 - -1.1 895,935 - -1.4 895,935 - -1.5 895,996 + ABZR87_RS04295 0.14 -2.0 895,996 + ABZR87_RS04295 0.14 -1.4 895,997 - ABZR87_RS04295 0.15 -2.1 896,102 + ABZR87_RS04295 0.52 -1.6 896,102 + ABZR87_RS04295 0.52 +0.0 896,102 + ABZR87_RS04295 0.52 -1.5 896,132 + ABZR87_RS04295 0.63 -0.3 896,132 + ABZR87_RS04295 0.63 +1.6 896,133 - ABZR87_RS04295 0.63 -0.2 896,133 - ABZR87_RS04295 0.63 -0.5 896,133 - ABZR87_RS04295 0.63 +1.2 896,133 - ABZR87_RS04295 0.63 -1.1 896,327 + -0.2 896,328 - -0.2 896,418 + -0.9 896,419 - +0.3 896,625 + ABZR87_RS04300 0.26 +0.4 896,625 + ABZR87_RS04300 0.26 +0.3 896,625 + ABZR87_RS04300 0.26 +0.7 896,626 - ABZR87_RS04300 0.26 +0.1 896,626 - ABZR87_RS04300 0.26 -2.3 896,626 - ABZR87_RS04300 0.26 -1.0 896,629 + ABZR87_RS04300 0.26 -1.2 896,629 + ABZR87_RS04300 0.26 -1.4 896,629 + ABZR87_RS04300 0.26 -0.5 896,629 + ABZR87_RS04300 0.26 -0.0 896,629 + ABZR87_RS04300 0.26 -0.3 896,629 + ABZR87_RS04300 0.26 +0.7 896,629 + ABZR87_RS04300 0.26 -1.2 896,629 + ABZR87_RS04300 0.26 +1.4 896,629 + ABZR87_RS04300 0.26 -0.1 896,629 + ABZR87_RS04300 0.26 -2.0 896,629 + ABZR87_RS04300 0.26 +0.2 896,629 + ABZR87_RS04300 0.26 -1.3 896,630 - ABZR87_RS04300 0.26 -2.0 896,630 - ABZR87_RS04300 0.26 +0.3 896,630 - ABZR87_RS04300 0.26 -0.6 896,630 - ABZR87_RS04300 0.26 -0.0 896,630 - ABZR87_RS04300 0.26 -0.1 896,630 - ABZR87_RS04300 0.26 -0.3 896,630 - ABZR87_RS04300 0.26 -1.2 896,630 - ABZR87_RS04300 0.26 +0.2 896,630 - ABZR87_RS04300 0.26 -0.9 896,630 - ABZR87_RS04300 0.26 -2.7 896,630 - ABZR87_RS04300 0.26 -0.8 896,630 - ABZR87_RS04300 0.26 -0.7 896,630 - ABZR87_RS04300 0.26 -1.1 896,630 - ABZR87_RS04300 0.26 -1.2 896,630 - ABZR87_RS04300 0.26 +0.0 896,630 - ABZR87_RS04300 0.26 -0.1 896,630 - ABZR87_RS04300 0.26 +0.8 896,630 - ABZR87_RS04300 0.26 +0.6 896,765 + ABZR87_RS04300 0.41 -2.8 896,766 - ABZR87_RS04300 0.41 +1.6 896,849 - ABZR87_RS04300 0.49 -2.0 896,849 - ABZR87_RS04300 0.49 -1.6 896,992 + ABZR87_RS04300 0.65 +0.6 896,992 + ABZR87_RS04300 0.65 +2.0 896,992 + ABZR87_RS04300 0.65 -1.5 896,993 - ABZR87_RS04300 0.65 -1.8 897,085 - ABZR87_RS04300 0.74 +0.7 897,085 - ABZR87_RS04300 0.74 +1.3 897,085 - ABZR87_RS04300 0.74 -2.4 897,085 - ABZR87_RS04300 0.74 -0.2 897,275 - +1.7 897,275 - -0.4 897,302 + -0.3 897,302 + -2.1 897,302 + -0.6 897,302 + -0.2 897,302 + +0.1 897,302 + -2.8 897,303 - -2.1 897,303 - -0.0 897,325 + +0.7 897,326 - -2.0 897,341 + +0.5 897,341 + -1.3 897,341 + +1.7 897,341 + +0.0 897,341 + -1.7 897,342 - +0.0 897,342 - -0.3 897,342 - +0.8 897,342 - +0.5 897,342 - -1.5 897,549 - ABZR87_RS04305 0.13 -0.8 897,587 + ABZR87_RS04305 0.18 -0.3 897,587 + ABZR87_RS04305 0.18 -1.0 897,587 + ABZR87_RS04305 0.18 -0.1 897,588 - ABZR87_RS04305 0.18 -0.2 897,588 - ABZR87_RS04305 0.18 +0.7 897,677 + ABZR87_RS04305 0.29 +0.3 897,677 + ABZR87_RS04305 0.29 +0.4 897,677 + ABZR87_RS04305 0.29 -2.5 897,677 + ABZR87_RS04305 0.29 -3.1 897,677 + ABZR87_RS04305 0.29 -1.5 897,678 - ABZR87_RS04305 0.29 +0.6 897,678 - ABZR87_RS04305 0.29 +0.2 897,678 - ABZR87_RS04305 0.29 +0.9 897,678 - ABZR87_RS04305 0.29 +0.9 897,678 - ABZR87_RS04305 0.29 -0.5 897,678 - ABZR87_RS04305 0.29 -0.4 897,679 + ABZR87_RS04305 0.29 +0.8 897,680 - ABZR87_RS04305 0.29 +1.4 897,706 - ABZR87_RS04305 0.32 +0.2 897,926 + ABZR87_RS04305 0.59 -1.0 897,927 - ABZR87_RS04305 0.59 +0.2 897,947 - ABZR87_RS04305 0.61 -1.8 897,947 - ABZR87_RS04305 0.61 +0.0 898,253 + +0.7 898,254 - -0.5 898,280 + -0.2 898,280 + +1.0 898,280 + +0.2 898,280 + +0.0 898,281 - +0.3 898,323 + +0.4 898,323 + +1.4 898,324 - +1.0 898,324 - -0.8
Or see this region's nucleotide sequence